Wall clock time and date at job start Wed Apr 1 2020 04:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34951 * 126.03463 * 2 1 4 4 C 1.35320 * 107.74569 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.04023 * 180.02562 * 4 3 2 6 6 H 1.09003 * 112.91645 * 31.48096 * 5 4 3 7 7 N 1.47383 * 113.70861 * 163.09781 * 5 4 3 8 8 C 1.46501 * 132.38285 * 294.36046 * 7 5 4 9 9 N 1.46896 * 109.47323 * 89.99623 * 8 7 5 10 10 C 1.46842 * 111.00017 * 81.04522 * 9 8 7 11 11 C 1.53039 * 109.52210 * 185.84098 * 10 9 8 12 12 C 1.53121 * 109.27759 * 300.82056 * 11 10 9 13 13 C 1.53115 * 109.15979 * 57.65541 * 12 11 10 14 14 H 1.09005 * 109.50263 * 62.28902 * 13 12 11 15 15 C 1.50700 * 109.50327 * 182.40176 * 13 12 11 16 16 H 1.08007 * 119.99946 * 120.00199 * 15 13 12 17 17 C 1.37871 * 120.00131 * 300.00232 * 15 13 12 18 18 N 1.31516 * 120.00201 * 179.97438 * 17 15 13 19 19 Si 1.86799 * 120.00131 * 359.97438 * 17 15 13 20 20 H 1.48500 * 109.46869 * 90.00121 * 19 17 15 21 21 H 1.48500 * 109.47198 * 209.99959 * 19 17 15 22 22 H 1.48498 * 109.47025 * 330.00109 * 19 17 15 23 23 C 1.46844 * 111.00167 * 205.25829 * 9 8 7 24 24 C 1.35837 * 95.24132 * 114.40001 * 7 5 4 25 25 O 1.21273 * 134.18120 * 180.02562 * 24 7 5 26 26 C 1.51521 * 91.64723 * 0.02562 * 24 7 5 27 27 C 1.52997 * 113.68839 * 245.57274 * 26 24 7 28 28 C 1.52995 * 113.77901 * 114.43783 * 26 24 7 29 29 C 1.39866 * 107.91898 * 359.97438 * 4 3 2 30 30 N 1.30844 * 108.20609 * 0.02562 * 29 4 3 31 31 H 1.09005 * 109.46927 * 270.02579 * 1 2 3 32 32 H 1.08994 * 109.47314 * 30.02415 * 1 2 3 33 33 H 1.08998 * 109.46715 * 150.02896 * 1 2 3 34 34 H 1.07996 * 126.12664 * 359.95494 * 3 2 1 35 35 H 1.09003 * 109.46960 * 209.99754 * 8 7 5 36 36 H 1.09001 * 109.46958 * 329.99300 * 8 7 5 37 37 H 1.08993 * 109.46812 * 305.85788 * 10 9 8 38 38 H 1.08999 * 109.46107 * 65.82944 * 10 9 8 39 39 H 1.08992 * 109.50704 * 60.76453 * 11 10 9 40 40 H 1.09008 * 109.50051 * 180.84476 * 11 10 9 41 41 H 1.08996 * 109.52520 * 177.56325 * 12 11 10 42 42 H 1.09000 * 109.52610 * 297.75213 * 12 11 10 43 43 H 0.97000 * 120.00734 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.46244 * 294.17761 * 23 9 8 45 45 H 1.09007 * 109.46356 * 54.14203 * 23 9 8 46 46 H 1.09005 * 109.46759 * 157.00334 * 27 26 24 47 47 H 1.08997 * 109.47460 * 276.99861 * 27 26 24 48 48 H 1.08998 * 109.47473 * 37.00573 * 27 26 24 49 49 H 1.09002 * 109.47599 * 322.95194 * 28 26 24 50 50 H 1.09002 * 109.47365 * 82.95510 * 28 26 24 51 51 H 1.09004 * 109.47049 * 202.95388 * 28 26 24 52 52 H 1.08004 * 125.89969 * 180.02562 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5438 0.6666 -0.0006 5 6 4.7680 1.5454 -0.0002 6 1 4.6136 2.4881 0.5247 7 7 6.0024 0.8418 0.3913 8 6 6.4307 0.2247 1.6491 9 7 6.0152 -1.1841 1.6698 10 6 6.9530 -2.0206 0.9100 11 6 6.4137 -3.4506 0.8304 12 6 6.2390 -4.0046 2.2471 13 6 5.2961 -3.0886 3.0322 14 1 4.3158 -3.0810 2.5555 15 6 5.1650 -3.5940 4.4458 16 1 5.4569 -2.9646 5.2736 17 6 4.6726 -4.8599 4.6825 18 7 4.5587 -5.3011 5.9162 19 14 4.1671 -5.9482 3.2510 20 1 5.3324 -6.7543 2.8065 21 1 3.0729 -6.8554 3.6811 22 1 3.6942 -5.1002 2.1274 23 6 5.8677 -1.6691 3.0479 24 6 6.6052 0.9655 -0.8197 25 8 7.6762 0.6179 -1.2701 26 6 5.4126 1.7088 -1.3863 27 6 4.6844 0.9476 -2.4959 28 6 5.7116 3.1623 -1.7583 29 6 3.5347 -0.7320 -0.0003 30 7 2.2892 -1.1327 -0.0002 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.9281 2.1193 -0.0007 35 1 7.5160 0.2847 1.7321 36 1 5.9726 0.7510 2.4865 37 1 7.0651 -1.6182 -0.0967 38 1 7.9220 -2.0251 1.4091 39 1 5.4512 -3.4487 0.3191 40 1 7.1173 -4.0747 0.2792 41 1 5.8144 -5.0072 2.1965 42 1 7.2078 -4.0431 2.7453 43 1 4.2126 -6.1918 6.0828 44 1 6.8418 -1.6753 3.5370 45 1 5.1914 -1.0113 3.5940 46 1 3.6584 1.3079 -2.5706 47 1 5.1964 1.1100 -3.4443 48 1 4.6795 -0.1172 -2.2633 49 1 6.3990 3.5903 -1.0286 50 1 6.1648 3.1980 -2.7490 51 1 4.7838 3.7345 -1.7625 52 1 4.4055 -1.3709 -0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853525166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:01 Heat of formation + Delta-G solvation = 65.840175 kcal Electronic energy + Delta-G solvation = -32865.400097 eV Core-core repulsion = 28867.127024 eV Total energy + Delta-G solvation = -3998.273074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.59734 -41.31302 -39.88372 -37.80432 -35.86453 -34.35207 -33.91649 -32.92654 -32.08322 -31.35992 -28.47223 -28.35631 -27.58822 -26.89976 -25.23310 -24.43259 -23.17250 -22.18715 -21.77157 -21.21037 -20.55193 -18.89135 -18.78192 -17.88866 -17.66812 -17.52678 -16.85236 -16.50848 -16.17386 -15.90642 -15.83099 -15.35609 -15.22841 -14.90245 -14.77096 -14.62060 -14.53481 -14.39345 -13.96200 -13.87390 -13.59156 -13.35147 -13.31663 -13.15363 -13.13812 -13.00841 -12.84798 -12.81237 -12.57150 -12.37074 -12.10662 -11.98046 -11.87654 -11.80705 -11.53622 -11.35082 -11.08652 -10.93427 -10.67331 -10.58053 -10.19042 -9.97511 -9.30855 -9.08120 -8.33485 -6.35320 1.12390 1.24606 1.31882 1.42813 1.47084 1.80780 1.88510 2.20424 2.28819 2.97220 3.02726 3.03879 3.63328 3.74998 3.91442 3.94623 4.06149 4.10149 4.16584 4.20574 4.22760 4.38144 4.39787 4.42602 4.52423 4.53735 4.56042 4.67407 4.73601 4.78007 4.79048 4.86612 4.87529 4.94959 4.96057 5.00357 5.03924 5.08985 5.10683 5.14020 5.15837 5.29762 5.40099 5.45015 5.56218 5.64438 5.69621 5.72936 5.85833 6.11314 6.16493 6.31361 6.34995 6.71630 6.95396 7.28098 7.30611 8.83197 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011354 B = 0.004245 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.524744 B = 6594.717951 C = 8041.098085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.382 5.382 3 C 0.086 3.914 4 C -0.257 4.257 5 C 0.232 3.768 6 H 0.138 0.862 7 N -0.614 5.614 8 C 0.288 3.712 9 N -0.551 5.551 10 C 0.072 3.928 11 C -0.111 4.111 12 C -0.119 4.119 13 C 0.027 3.973 14 H 0.017 0.983 15 C -0.513 4.513 16 H 0.039 0.961 17 C 0.020 3.980 18 N -0.947 5.947 19 Si 0.944 3.056 20 H -0.269 1.269 21 H -0.299 1.299 22 H -0.258 1.258 23 C 0.099 3.901 24 C 0.520 3.480 25 O -0.554 6.554 26 C -0.097 4.097 27 C -0.112 4.112 28 C -0.121 4.121 29 C 0.078 3.922 30 N -0.356 5.356 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.078 0.922 34 H 0.223 0.777 35 H 0.053 0.947 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.030 0.970 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.031 0.969 42 H 0.052 0.948 43 H 0.265 0.735 44 H 0.025 0.975 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.066 0.934 48 H 0.032 0.968 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.102 0.898 52 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.090 22.137 -18.149 29.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.164 5.164 3 C -0.062 4.062 4 C -0.269 4.269 5 C 0.129 3.871 6 H 0.155 0.845 7 N -0.349 5.349 8 C 0.078 3.922 9 N -0.278 5.278 10 C -0.056 4.056 11 C -0.148 4.148 12 C -0.156 4.156 13 C 0.008 3.992 14 H 0.035 0.965 15 C -0.551 4.551 16 H 0.058 0.942 17 C -0.177 4.177 18 N -0.588 5.588 19 Si 0.772 3.228 20 H -0.195 1.195 21 H -0.227 1.227 22 H -0.182 1.182 23 C -0.029 4.029 24 C 0.308 3.692 25 O -0.430 6.430 26 C -0.101 4.101 27 C -0.169 4.169 28 C -0.179 4.179 29 C -0.107 4.107 30 N -0.178 5.178 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.097 0.903 34 H 0.239 0.761 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.051 0.949 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.121 0.879 52 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.917 20.683 -18.302 28.471 hybrid contribution 1.283 -1.102 0.776 1.861 sum -5.634 19.581 -17.526 26.876 Atomic orbital electron populations 1.22123 0.72498 1.05826 1.04036 1.48816 1.07771 1.03567 1.56215 1.22810 0.89408 0.94741 0.99249 1.19882 0.94586 0.92939 1.19502 1.20836 0.80975 0.93316 0.91990 0.84476 1.51302 1.18163 1.54840 1.10563 1.21788 0.97169 0.86444 0.86815 1.61720 1.48901 1.02749 1.14425 1.21908 0.92992 0.93111 0.97553 1.21582 1.01006 0.95709 0.96532 1.21898 0.99980 0.98131 0.95624 1.18985 0.94500 0.92430 0.93309 0.96459 1.21301 1.41575 0.99906 0.92365 0.94227 1.25689 0.95209 0.99313 0.97494 1.70022 1.48316 1.19144 1.21305 0.85909 0.77518 0.78877 0.80452 1.19493 1.22728 1.18216 1.21680 0.98462 0.96152 0.86578 1.23063 0.86497 0.77654 0.82018 1.90673 1.25605 1.55858 1.70889 1.22913 0.91982 0.98771 0.96464 1.21430 1.00939 0.98402 0.96150 1.21586 1.03859 0.90263 1.02170 1.23847 0.94275 0.95873 0.96744 1.77452 1.02918 1.10266 1.27154 0.90635 0.85550 0.90275 0.76050 0.92872 0.87623 0.91559 0.95155 0.92618 0.90668 0.95037 0.92938 0.92594 0.95698 0.91566 0.89490 0.91538 0.94908 0.92107 0.91503 0.87894 0.81927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.18 11.47 127.77 1.47 2.64 16 2 N -0.38 -8.10 4.01 -369.56 -1.48 -9.58 16 3 C 0.09 1.31 11.40 83.54 0.95 2.26 16 4 C -0.26 -5.29 3.99 -20.14 -0.08 -5.37 16 5 C 0.23 3.88 4.64 44.22 0.21 4.08 16 6 H 0.14 1.35 8.01 -2.39 -0.02 1.33 16 7 N -0.61 -14.59 2.95 -826.08 -2.43 -17.03 16 8 C 0.29 7.76 6.57 170.81 1.12 8.88 16 9 N -0.55 -18.30 2.72 -908.74 -2.47 -20.77 16 10 C 0.07 2.46 5.07 86.33 0.44 2.90 16 11 C -0.11 -4.06 6.09 30.65 0.19 -3.87 16 12 C -0.12 -5.26 4.73 30.67 0.15 -5.11 16 13 C 0.03 1.30 1.85 -11.49 -0.02 1.28 16 14 H 0.02 0.90 7.21 -2.38 -0.02 0.88 16 15 C -0.51 -29.72 9.15 25.60 0.23 -29.48 16 16 H 0.04 2.49 7.99 -2.91 -0.02 2.46 16 17 C 0.02 1.21 5.45 84.65 0.46 1.67 16 18 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 19 Si 0.94 48.00 24.35 68.60 1.67 49.67 16 20 H -0.27 -13.04 6.89 99.48 0.69 -12.36 16 21 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 22 H -0.26 -12.82 6.53 99.48 0.65 -12.17 16 23 C 0.10 3.92 4.62 86.32 0.40 4.32 16 24 C 0.52 13.65 7.90 87.65 0.69 14.35 16 25 O -0.55 -19.16 17.63 -3.01 -0.05 -19.22 16 26 C -0.10 -1.62 1.44 -52.41 -0.08 -1.70 16 27 C -0.11 -1.91 8.03 71.98 0.58 -1.33 16 28 C -0.12 -1.22 9.14 71.98 0.66 -0.57 16 29 C 0.08 2.38 10.05 85.23 0.86 3.23 16 30 N -0.36 -11.46 12.58 -57.02 -0.72 -12.18 16 31 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.22 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.05 1.47 7.92 -2.39 -0.02 1.45 16 36 H 0.11 2.52 7.70 -2.39 -0.02 2.50 16 37 H 0.07 2.28 6.95 -2.39 -0.02 2.26 16 38 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 2.12 7.94 -2.39 -0.02 2.10 16 40 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 41 H 0.03 1.48 3.34 -2.39 -0.01 1.47 16 42 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 44 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.07 2.61 7.91 -2.38 -0.02 2.59 16 46 H 0.09 1.15 7.87 -2.38 -0.02 1.13 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.03 0.76 6.95 -2.39 -0.02 0.75 16 49 H 0.06 0.65 8.06 -2.39 -0.02 0.63 16 50 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 52 H 0.16 5.78 6.06 -2.91 -0.02 5.77 16 Total: -1.00 -81.21 402.02 3.85 -77.36 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.82 Total: 13.64 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 8.22 Total: -1.82 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -6.81 Total: -119.63 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.05 Total: -19.22 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.67 Total: 49.67 kcal Total: -81.21 3.85 -77.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.198 kcal (2) G-P(sol) polarization free energy of solvation -81.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds