Wall clock time and date at job start Wed Apr 1 2020 04:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34946 * 126.03091 * 2 1 4 4 C 1.35321 * 107.74272 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.04035 * 180.02562 * 4 3 2 6 6 H 1.09003 * 112.41900 * 16.92018 * 5 4 3 7 7 N 1.46356 * 113.05300 * 146.40250 * 5 4 3 8 8 C 1.46505 * 134.66764 * 295.36754 * 7 5 4 9 9 N 1.46901 * 109.46699 * 280.28100 * 8 7 5 10 10 C 1.46843 * 111.00095 * 277.09647 * 9 8 7 11 11 C 1.53037 * 109.52707 * 174.16542 * 10 9 8 12 12 C 1.53127 * 109.27829 * 59.17395 * 11 10 9 13 13 C 1.53115 * 109.16183 * 302.35285 * 12 11 10 14 14 H 1.09007 * 109.50227 * 297.66962 * 13 12 11 15 15 C 1.50694 * 109.50015 * 177.59865 * 13 12 11 16 16 H 1.08006 * 119.99732 * 239.99185 * 15 13 12 17 17 C 1.37878 * 120.00850 * 59.99699 * 15 13 12 18 18 N 1.31516 * 119.99588 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00216 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47342 * 59.99840 * 19 17 15 21 21 H 1.48500 * 109.46886 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47107 * 299.99417 * 19 17 15 23 23 C 1.46849 * 110.99979 * 152.88661 * 9 8 7 24 24 C 1.34599 * 90.66781 * 115.61936 * 7 5 4 25 25 O 1.21287 * 131.84774 * 179.75562 * 24 7 5 26 26 C 1.50569 * 96.30777 * 359.76113 * 24 7 5 27 27 C 1.52998 * 114.57254 * 246.82421 * 26 24 7 28 28 C 1.53000 * 114.18348 * 113.61448 * 26 24 7 29 29 C 1.39872 * 107.91985 * 0.26204 * 4 3 2 30 30 N 1.30833 * 108.19803 * 359.55703 * 29 4 3 31 31 H 1.09003 * 109.47349 * 89.99743 * 1 2 3 32 32 H 1.09009 * 109.47077 * 209.99657 * 1 2 3 33 33 H 1.08997 * 109.47479 * 329.99649 * 1 2 3 34 34 H 1.07996 * 126.13381 * 0.04592 * 3 2 1 35 35 H 1.08991 * 109.47214 * 160.27957 * 8 7 5 36 36 H 1.09001 * 109.47082 * 40.27816 * 8 7 5 37 37 H 1.08994 * 109.46637 * 54.14004 * 10 9 8 38 38 H 1.09009 * 109.45094 * 294.17574 * 10 9 8 39 39 H 1.08998 * 109.50304 * 299.23824 * 11 10 9 40 40 H 1.08993 * 109.53663 * 179.13951 * 11 10 9 41 41 H 1.08995 * 109.52136 * 182.44268 * 12 11 10 42 42 H 1.09002 * 109.57025 * 62.28702 * 12 11 10 43 43 H 0.96999 * 120.00358 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.46235 * 65.81841 * 23 9 8 45 45 H 1.09000 * 109.46406 * 305.85789 * 23 9 8 46 46 H 1.08999 * 109.46967 * 152.78353 * 27 26 24 47 47 H 1.08997 * 109.46808 * 272.78789 * 27 26 24 48 48 H 1.08997 * 109.46845 * 32.78778 * 27 26 24 49 49 H 1.08996 * 109.47311 * 327.39570 * 28 26 24 50 50 H 1.08998 * 109.46942 * 87.39891 * 28 26 24 51 51 H 1.09002 * 109.46965 * 207.39373 * 28 26 24 52 52 H 1.07999 * 125.89801 * 179.73937 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6667 -0.0006 5 6 4.7679 1.5454 -0.0002 6 1 4.5435 2.5708 0.2938 7 7 5.8877 0.9679 0.7443 8 6 6.1234 0.6263 2.1493 9 7 6.4734 1.8416 2.8966 10 6 7.9001 2.1568 2.7503 11 6 8.1981 3.5013 3.4178 12 6 7.8226 3.4238 4.9004 13 6 6.3439 3.0468 5.0253 14 1 5.7305 3.8234 4.5684 15 6 5.9808 2.9107 6.4815 16 1 5.6095 1.9697 6.8598 17 6 6.1224 3.9874 7.3310 18 7 6.5750 5.1332 6.8705 19 14 5.6729 3.8184 9.1362 20 1 6.5081 2.7592 9.7573 21 1 5.9138 5.1095 9.8293 22 1 4.2389 3.4525 9.2570 23 6 6.0998 1.7155 4.3112 24 6 6.6154 0.8834 -0.3849 25 8 7.7399 0.4802 -0.5946 26 6 5.5668 1.4568 -1.3007 27 6 5.0034 0.4664 -2.3218 28 6 5.9377 2.8115 -1.9076 29 6 3.5346 -0.7320 -0.0070 30 7 2.2892 -1.1326 -0.0006 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.9280 2.1194 0.0007 35 1 6.9420 -0.0901 2.2167 36 1 5.2203 0.1868 2.5728 37 1 8.1530 2.2129 1.6916 38 1 8.4949 1.3760 3.2247 39 1 7.6139 4.2846 2.9350 40 1 9.2599 3.7281 3.3227 41 1 7.9926 4.3925 5.3702 42 1 8.4342 2.6678 5.3929 43 1 6.6750 5.8906 7.4681 44 1 6.7031 0.9369 4.7781 45 1 5.0450 1.4513 4.3861 46 1 3.9889 0.7600 -2.5911 47 1 5.6308 0.4673 -3.2131 48 1 4.9893 -0.5336 -1.8884 49 1 6.5456 3.3731 -1.1984 50 1 6.5024 2.6554 -2.8267 51 1 5.0290 3.3709 -2.1301 52 1 4.4054 -1.3708 -0.0130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853525168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:09 Heat of formation + Delta-G solvation = 82.449455 kcal Electronic energy + Delta-G solvation = -31808.318623 eV Core-core repulsion = 27810.765782 eV Total energy + Delta-G solvation = -3997.552841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98666 -40.62337 -38.10323 -36.55597 -34.22169 -33.36291 -32.76829 -31.35163 -30.65100 -29.85988 -27.90152 -27.30925 -26.71619 -24.95715 -24.23385 -22.74270 -21.65969 -21.25023 -20.93135 -20.47618 -18.64724 -17.88925 -16.91674 -16.87648 -16.34082 -16.19384 -15.64632 -15.61213 -14.90815 -14.61702 -14.48588 -14.25847 -13.96995 -13.58506 -13.44803 -13.43007 -12.98195 -12.89932 -12.80477 -12.71458 -12.61112 -12.46561 -12.30228 -12.18792 -12.02031 -11.77204 -11.36638 -11.26223 -11.03913 -10.94876 -10.79826 -10.72641 -10.69534 -10.11754 -9.86112 -9.63719 -9.57979 -9.48228 -9.22659 -8.76851 -8.72702 -8.50574 -8.32004 -7.75591 -5.98727 -4.05283 1.68604 2.31541 2.48537 2.63706 3.18970 3.30836 3.35818 3.38205 3.77910 4.27798 4.38675 4.52316 4.60974 4.64956 4.74957 4.84948 4.94572 4.98196 5.11205 5.14537 5.24768 5.31237 5.41256 5.48186 5.53189 5.60224 5.67980 5.71270 5.74573 5.78418 5.85051 5.88993 5.95386 6.06978 6.16468 6.24950 6.33760 6.42266 6.49022 6.62152 6.72108 6.73741 6.79243 6.87955 6.97192 7.21328 7.37312 7.50809 7.62858 7.71081 7.76574 8.05790 8.15921 8.37283 8.46105 8.98349 9.59040 11.07033 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011040 B = 0.003196 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.664527 B = 8757.558942 C =10459.409259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.377 5.377 3 C 0.075 3.925 4 C -0.238 4.238 5 C 0.214 3.786 6 H 0.102 0.898 7 N -0.604 5.604 8 C 0.302 3.698 9 N -0.552 5.552 10 C 0.067 3.933 11 C -0.115 4.115 12 C -0.111 4.111 13 C 0.058 3.942 14 H 0.034 0.966 15 C -0.516 4.516 16 H 0.053 0.947 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.073 3.927 24 C 0.522 3.478 25 O -0.523 6.523 26 C -0.110 4.110 27 C -0.113 4.113 28 C -0.121 4.121 29 C 0.069 3.931 30 N -0.298 5.298 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.177 0.823 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.024 0.976 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.030 0.970 43 H 0.260 0.740 44 H 0.022 0.978 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.070 0.930 52 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.803 -6.415 -18.694 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.072 4.072 4 C -0.251 4.251 5 C 0.108 3.892 6 H 0.119 0.881 7 N -0.339 5.339 8 C 0.093 3.907 9 N -0.278 5.278 10 C -0.061 4.061 11 C -0.153 4.153 12 C -0.149 4.149 13 C 0.039 3.961 14 H 0.052 0.948 15 C -0.555 4.555 16 H 0.071 0.929 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.054 4.054 24 C 0.308 3.692 25 O -0.398 6.398 26 C -0.114 4.114 27 C -0.171 4.171 28 C -0.179 4.179 29 C -0.117 4.117 30 N -0.119 5.119 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.194 0.806 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.040 0.960 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.331 -7.153 -18.652 22.490 hybrid contribution 0.699 0.032 1.631 1.775 sum -9.632 -7.121 -17.021 20.814 Atomic orbital electron populations 1.21855 0.74157 1.04649 1.03243 1.48455 1.06641 1.03824 1.56947 1.22287 0.90491 0.93543 1.00906 1.19944 0.93809 0.94001 1.17330 1.20287 0.84687 0.96216 0.87965 0.88054 1.50180 1.15589 1.61787 1.06318 1.21651 1.00334 0.90578 0.78184 1.61681 1.18589 1.34347 1.13214 1.22020 0.87131 0.97779 0.99154 1.21657 0.98994 0.95587 0.99051 1.21660 0.98421 1.03272 0.91525 1.18637 0.93054 0.90659 0.93748 0.94807 1.21098 1.43560 0.97240 0.93621 0.92918 1.24920 0.95111 0.95282 0.98413 1.69879 1.45870 1.01683 1.35190 0.86694 0.78931 0.77213 0.85347 1.20366 1.21307 1.20347 1.22281 0.98659 1.00722 0.83692 1.22090 0.86208 0.77001 0.83937 1.90677 1.18906 1.48325 1.81842 1.22334 0.95197 0.98477 0.95410 1.21458 1.00788 0.97681 0.97149 1.21471 1.02123 0.93182 1.01138 1.23622 0.94895 0.94410 0.98808 1.77389 1.01548 1.08198 1.24773 0.90814 0.89341 0.89344 0.80617 0.92451 0.89522 0.92532 0.95762 0.92230 0.93547 0.89075 0.95132 0.92990 0.95997 0.92188 0.91414 0.91841 0.92093 0.91672 0.91403 0.91073 0.80678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.55 11.47 59.85 0.69 1.24 16 2 N -0.38 -3.58 4.01 -68.16 -0.27 -3.85 16 3 C 0.07 0.67 11.40 -17.22 -0.20 0.47 16 4 C -0.24 -2.50 4.24 -105.05 -0.45 -2.94 16 5 C 0.21 2.40 4.39 -81.50 -0.36 2.05 16 6 H 0.10 1.14 8.00 -51.93 -0.42 0.72 16 7 N -0.60 -8.47 3.22 -197.26 -0.63 -9.11 16 8 C 0.30 4.70 6.72 -63.31 -0.43 4.28 16 9 N -0.55 -10.08 4.75 -238.58 -1.13 -11.21 16 10 C 0.07 1.25 5.31 -3.84 -0.02 1.23 16 11 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 12 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 13 C 0.06 1.42 2.26 -91.70 -0.21 1.21 16 14 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.52 -13.93 8.56 -34.44 -0.29 -14.22 16 16 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.02 11.35 55.43 0.63 -24.40 16 19 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.07 1.51 4.61 -3.84 -0.02 1.49 16 24 C 0.52 7.68 8.20 -23.40 -0.19 7.49 16 25 O -0.52 -9.64 18.03 5.55 0.10 -9.54 16 26 C -0.11 -1.17 1.57 -155.78 -0.24 -1.42 16 27 C -0.11 -1.03 7.97 37.16 0.30 -0.73 16 28 C -0.12 -1.11 9.24 37.16 0.34 -0.76 16 29 C 0.07 0.79 9.84 -17.37 -0.17 0.62 16 30 N -0.30 -3.58 12.57 30.62 0.39 -3.20 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.06 0.91 7.89 -51.93 -0.41 0.50 16 36 H 0.09 1.28 7.67 -51.93 -0.40 0.88 16 37 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 38 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.21 7.90 -51.93 -0.41 0.80 16 46 H 0.07 0.54 7.82 -51.93 -0.41 0.14 16 47 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 48 H 0.06 0.60 6.09 -51.93 -0.32 0.28 16 49 H 0.06 0.69 8.02 -51.93 -0.42 0.27 16 50 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 52 H 0.18 1.91 7.72 -52.49 -0.40 1.51 16 LS Contribution 414.15 15.07 6.24 6.24 Total: -1.00 -32.49 414.15 -10.30 -42.79 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.95 Total: -0.19 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.64 Total: -3.56 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -1.03 Total: -51.77 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.10 Total: -9.54 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.49 -10.30 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.243 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds