Wall clock time and date at job start Wed Apr 1 2020 04:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53004 * 109.52693 * 2 1 4 4 C 1.53190 * 109.51041 * 239.92627 * 2 1 3 5 5 N 1.46928 * 108.76494 * 294.69492 * 4 2 1 6 6 C 1.36941 * 120.62820 * 126.35882 * 5 4 2 7 7 H 1.08003 * 120.00140 * 332.66185 * 6 5 4 8 8 C 1.38815 * 119.99888 * 152.65445 * 6 5 4 9 9 N 1.31619 * 119.99822 * 159.33676 * 8 6 5 10 10 Si 1.86797 * 120.00066 * 339.33827 * 8 6 5 11 11 H 1.48503 * 109.47216 * 92.96375 * 10 8 6 12 12 H 1.48496 * 109.47012 * 212.96501 * 10 8 6 13 13 H 1.48503 * 109.47191 * 332.96594 * 10 8 6 14 14 C 1.46916 * 118.74067 * 306.38246 * 5 4 2 15 15 C 1.53195 * 108.77535 * 53.60643 * 14 5 4 16 16 C 1.53034 * 109.31573 * 305.36646 * 15 14 5 17 17 H 1.09004 * 109.45625 * 301.36223 * 16 15 14 18 18 N 1.46489 * 109.46396 * 181.38521 * 16 15 14 19 19 C 1.34778 * 120.00458 * 84.97040 * 18 16 15 20 20 O 1.21609 * 119.99355 * 0.02562 * 19 18 16 21 21 C 1.47423 * 120.00306 * 179.72470 * 19 18 16 22 22 C 1.41293 * 126.41443 * 0.30171 * 21 19 18 23 23 N 1.30451 * 108.01884 * 179.97438 * 22 21 19 24 24 N 1.39929 * 108.90055 * 359.97438 * 23 22 21 25 25 C 1.46503 * 125.75250 * 179.97438 * 24 23 22 26 26 C 1.53786 * 113.61200 * 192.47384 * 25 24 23 27 27 C 1.53781 * 87.08135 * 220.02119 * 26 25 24 28 28 C 1.53782 * 113.61180 * 94.98167 * 25 24 23 29 29 C 1.34255 * 108.49315 * 359.72948 * 24 23 22 30 30 H 1.09000 * 109.47610 * 299.91812 * 1 2 3 31 31 H 1.09002 * 109.47411 * 59.91583 * 1 2 3 32 32 H 1.09003 * 109.47133 * 179.91815 * 1 2 3 33 33 H 1.08992 * 109.47543 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46983 * 300.08525 * 3 2 1 35 35 H 1.09004 * 109.46619 * 60.08120 * 3 2 1 36 36 H 1.09004 * 109.59947 * 174.91127 * 4 2 1 37 37 H 1.08997 * 109.70513 * 54.55074 * 4 2 1 38 38 H 0.97002 * 119.99615 * 180.02562 * 9 8 6 39 39 H 1.09001 * 109.58908 * 293.82133 * 14 5 4 40 40 H 1.09002 * 109.70486 * 173.46486 * 14 5 4 41 41 H 1.08997 * 109.50005 * 185.41186 * 15 14 5 42 42 H 1.09001 * 109.52178 * 65.33569 * 15 14 5 43 43 H 0.97000 * 120.00216 * 264.97005 * 18 16 15 44 44 H 1.07993 * 125.99129 * 359.96640 * 22 21 19 45 45 H 1.09000 * 112.85068 * 323.77998 * 25 24 23 46 46 H 1.08997 * 113.61823 * 334.57023 * 26 25 24 47 47 H 1.09000 * 113.61182 * 105.47298 * 26 25 24 48 48 H 1.09002 * 113.61271 * 270.89118 * 27 26 25 49 49 H 1.09000 * 113.69018 * 139.99317 * 27 26 25 50 50 H 1.09001 * 113.61314 * 254.52765 * 28 25 24 51 51 H 1.08998 * 113.61574 * 25.34521 * 28 25 24 52 52 H 1.08000 * 126.29384 * 180.29747 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0415 -0.7236 -1.2496 5 7 1.6515 -2.1379 -1.1697 6 6 0.9631 -2.7307 -2.1943 7 1 0.3293 -2.1352 -2.8348 8 6 1.0799 -4.0970 -2.4100 9 7 0.1536 -4.7373 -3.0913 10 14 2.5519 -5.0269 -1.7332 11 1 2.2155 -5.5816 -0.3974 12 1 2.9034 -6.1362 -2.6557 13 1 3.7070 -4.1019 -1.6084 14 6 2.0137 -2.9039 0.0305 15 6 1.5027 -2.1556 1.2658 16 6 2.0407 -0.7231 1.2484 17 1 3.1305 -0.7446 1.2351 18 7 1.5811 -0.0145 2.4453 19 6 2.2700 -0.1223 3.5986 20 8 3.2735 -0.8076 3.6455 21 6 1.8108 0.5957 4.8015 22 6 0.6705 1.4243 4.8996 23 7 0.6029 1.8746 6.1220 24 7 1.6802 1.3629 6.8538 25 6 1.9609 1.6330 8.2661 26 6 3.3627 1.1847 8.7122 27 6 2.7082 0.7068 10.0191 28 6 1.4016 0.5647 9.2206 29 6 2.4101 0.5784 6.0450 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1312 1.4411 -0.0005 34 1 1.6772 1.9566 -0.8892 35 1 1.6796 1.9557 0.8908 36 1 3.1277 -0.6463 -1.2978 37 1 1.6033 -0.2734 -2.1402 38 1 0.2351 -5.6921 -3.2416 39 1 3.0976 -3.0044 0.0867 40 1 1.5569 -3.8926 -0.0127 41 1 1.8476 -2.6628 2.1669 42 1 0.4130 -2.1352 1.2544 43 1 0.7808 0.5324 2.4078 44 1 -0.0233 1.6460 4.1023 45 1 1.7134 2.6532 8.5593 46 1 3.7750 0.3757 8.1091 47 1 4.0616 2.0097 8.8501 48 1 2.6661 1.4739 10.7923 49 1 3.1017 -0.2417 10.3847 50 1 0.5172 0.8892 9.7690 51 1 1.2763 -0.4133 8.7560 52 1 3.3035 0.0357 6.3165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940745631.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:43 Heat of formation + Delta-G solvation = 85.870881 kcal Electronic energy + Delta-G solvation = -31293.959949 eV Core-core repulsion = 27296.555472 eV Total energy + Delta-G solvation = -3997.404477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.78117 -39.93643 -38.96520 -37.91337 -34.75371 -33.16467 -32.12994 -31.65408 -30.72166 -29.84112 -26.93308 -26.52271 -26.35584 -26.06920 -24.85488 -22.99486 -21.83860 -21.63344 -21.13795 -20.06449 -19.66874 -18.80061 -17.83568 -16.79276 -16.34374 -16.21400 -15.86617 -15.40875 -14.97308 -14.81864 -14.45865 -14.30216 -14.15812 -13.87003 -13.70088 -13.43656 -13.36069 -13.13708 -12.88309 -12.70079 -12.67393 -12.33377 -12.02278 -11.95097 -11.73912 -11.60999 -11.39135 -11.29730 -11.24940 -11.19386 -11.05508 -10.76959 -10.48794 -10.34826 -10.07272 -9.91657 -9.81702 -9.78995 -9.55722 -9.44742 -8.94028 -8.63624 -8.50730 -6.92929 -5.91079 -3.26391 1.35614 2.01096 2.02559 3.38535 3.41634 3.53863 3.55902 3.58145 3.65669 3.83620 4.10499 4.14627 4.41615 4.48619 4.58090 4.87330 4.94536 4.96666 4.98119 5.00751 5.07879 5.16225 5.24025 5.27558 5.29124 5.30803 5.36219 5.45775 5.55122 5.65615 5.77314 5.79183 5.89482 5.95649 6.06200 6.16227 6.18724 6.24164 6.32312 6.37753 6.46430 6.52854 6.56766 6.66436 6.69309 6.74483 6.81514 6.88082 7.06193 7.30817 7.77965 7.99983 8.36379 8.48037 8.97899 9.76494 10.14271 11.24731 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.002440 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.420048 B =11471.820508 C =12199.144014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.136 4.136 4 C 0.162 3.838 5 N -0.603 5.603 6 C -0.256 4.256 7 H 0.086 0.914 8 C 0.023 3.977 9 N -0.909 5.909 10 Si 0.881 3.119 11 H -0.289 1.289 12 H -0.305 1.305 13 H -0.270 1.270 14 C 0.129 3.871 15 C -0.144 4.144 16 C 0.166 3.834 17 H 0.082 0.918 18 N -0.716 5.716 19 C 0.591 3.409 20 O -0.553 6.553 21 C -0.288 4.288 22 C 0.080 3.920 23 N -0.298 5.298 24 N -0.352 5.352 25 C 0.132 3.868 26 C -0.148 4.148 27 C -0.137 4.137 28 C -0.148 4.148 29 C 0.124 3.876 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.262 0.738 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.395 0.605 44 H 0.188 0.812 45 H 0.125 0.875 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.090 0.910 52 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 15.684 24.249 29.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.092 4.092 3 C -0.194 4.194 4 C 0.035 3.965 5 N -0.326 5.326 6 C -0.384 4.384 7 H 0.103 0.897 8 C -0.176 4.176 9 N -0.552 5.552 10 Si 0.711 3.289 11 H -0.217 1.217 12 H -0.233 1.233 13 H -0.195 1.195 14 C 0.002 3.998 15 C -0.184 4.184 16 C 0.062 3.938 17 H 0.100 0.900 18 N -0.366 5.366 19 C 0.378 3.622 20 O -0.432 6.432 21 C -0.302 4.302 22 C -0.108 4.108 23 N -0.117 5.117 24 N -0.130 5.130 25 C 0.030 3.970 26 C -0.186 4.186 27 C -0.175 4.175 28 C -0.186 4.186 29 C -0.027 4.027 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.230 0.770 44 H 0.205 0.795 45 H 0.143 0.857 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.108 0.892 49 H 0.101 0.899 50 H 0.100 0.900 51 H 0.109 0.891 52 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.375 15.815 25.118 29.873 hybrid contribution 0.774 -0.895 -0.227 1.205 sum 4.149 14.920 24.891 29.315 Atomic orbital electron populations 1.21800 0.94055 1.03323 0.99794 1.21343 0.96774 0.94783 0.96292 1.21799 1.00833 0.95628 1.01176 1.20945 0.96383 0.84821 0.94313 1.44355 1.65741 1.06623 1.15896 1.18888 1.19468 0.92055 1.08014 0.89664 1.25265 0.97793 0.96703 0.97812 1.69837 1.32658 1.08769 1.43930 0.86985 0.85591 0.79296 0.76983 1.21661 1.23307 1.19481 1.21308 0.97141 0.95685 0.85624 1.22456 1.01628 0.95139 0.99182 1.20924 0.99267 0.91256 0.82343 0.89975 1.46027 1.29674 1.50809 1.10110 1.17223 0.82846 0.80038 0.82059 1.90767 1.25955 1.41552 1.84915 1.20361 1.02291 1.11968 0.95625 1.24069 0.96728 0.95122 0.94869 1.77152 1.07143 1.22307 1.05109 1.48587 1.19534 1.35237 1.09665 1.23155 0.97685 1.01231 0.74895 1.23460 0.95080 1.02487 0.97617 1.22707 0.95899 1.02771 0.96087 1.23454 0.98727 0.99409 0.97022 1.22835 0.96974 0.93298 0.89583 0.94586 0.92845 0.90457 0.92941 0.92547 0.93201 0.95799 0.91430 0.92852 0.95584 0.90800 0.92412 0.91204 0.77029 0.79505 0.85687 0.88603 0.89580 0.89195 0.89914 0.90016 0.89102 0.79835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.83 37.15 0.29 -1.70 16 2 C -0.09 -1.38 0.56 -154.39 -0.09 -1.47 16 3 C -0.14 -1.73 8.31 37.16 0.31 -1.42 16 4 C 0.16 3.10 5.20 -3.71 -0.02 3.08 16 5 N -0.60 -13.99 2.21 -172.32 -0.38 -14.37 16 6 C -0.26 -6.99 10.04 -15.06 -0.15 -7.15 16 7 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 8 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 9 N -0.91 -27.78 13.97 55.49 0.78 -27.01 16 10 Si 0.88 22.75 24.35 -169.99 -4.14 18.61 16 11 H -0.29 -7.28 6.62 56.52 0.37 -6.91 16 12 H -0.30 -8.02 7.11 56.52 0.40 -7.61 16 13 H -0.27 -6.89 6.63 56.52 0.38 -6.52 16 14 C 0.13 2.87 4.20 -3.71 -0.02 2.85 16 15 C -0.14 -2.69 5.31 -26.61 -0.14 -2.83 16 16 C 0.17 2.71 1.57 -67.90 -0.11 2.60 16 17 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 18 N -0.72 -9.75 4.28 -54.85 -0.23 -9.98 16 19 C 0.59 8.76 7.78 -12.52 -0.10 8.66 16 20 O -0.55 -10.17 16.56 5.27 0.09 -10.08 16 21 C -0.29 -3.51 6.13 -105.07 -0.64 -4.15 16 22 C 0.08 0.85 11.50 -16.98 -0.20 0.66 16 23 N -0.30 -3.39 12.50 30.86 0.39 -3.00 16 24 N -0.35 -3.39 3.77 -53.52 -0.20 -3.59 16 25 C 0.13 0.83 5.02 -67.11 -0.34 0.49 16 26 C -0.15 -0.65 7.42 -25.92 -0.19 -0.85 16 27 C -0.14 -0.48 8.08 -25.92 -0.21 -0.69 16 28 C -0.15 -0.79 7.88 -25.92 -0.20 -0.99 16 29 C 0.12 1.31 10.50 -16.56 -0.17 1.14 16 30 H 0.04 0.43 6.58 -51.93 -0.34 0.09 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.40 5.97 -51.93 -0.31 1.09 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.03 0.60 7.08 -51.93 -0.37 0.23 16 40 H 0.07 1.81 4.50 -51.93 -0.23 1.57 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.30 6.34 -51.93 -0.33 0.98 16 43 H 0.39 4.40 5.61 -40.82 -0.23 4.17 16 44 H 0.19 1.45 7.50 -52.49 -0.39 1.06 16 45 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.45 6.29 -51.93 -0.33 0.13 16 47 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 49 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.18 1.62 6.65 -52.49 -0.35 1.27 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -33.94 395.86 -8.14 -42.08 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.33 Total: 2.56 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.07 Total: -1.19 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.34 Total: -57.94 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.14 Total: 18.61 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.94 -8.14 -42.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940745631.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.950 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds