Wall clock time and date at job start Wed Apr 1 2020 04:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53004 * 109.52693 * 2 1 4 4 C 1.53190 * 109.51041 * 239.92627 * 2 1 3 5 5 N 1.46928 * 108.76494 * 294.69492 * 4 2 1 6 6 C 1.36941 * 120.62820 * 126.35882 * 5 4 2 7 7 H 1.08003 * 120.00140 * 332.66185 * 6 5 4 8 8 C 1.38815 * 119.99888 * 152.65445 * 6 5 4 9 9 N 1.31619 * 119.99822 * 159.33676 * 8 6 5 10 10 Si 1.86797 * 120.00066 * 339.33827 * 8 6 5 11 11 H 1.48503 * 109.47216 * 92.96375 * 10 8 6 12 12 H 1.48496 * 109.47012 * 212.96501 * 10 8 6 13 13 H 1.48503 * 109.47191 * 332.96594 * 10 8 6 14 14 C 1.46916 * 118.74067 * 306.38246 * 5 4 2 15 15 C 1.53195 * 108.77535 * 53.60643 * 14 5 4 16 16 C 1.53034 * 109.31573 * 305.36646 * 15 14 5 17 17 H 1.09004 * 109.45625 * 301.36223 * 16 15 14 18 18 N 1.46489 * 109.46396 * 181.38521 * 16 15 14 19 19 C 1.34778 * 120.00458 * 84.97040 * 18 16 15 20 20 O 1.21609 * 119.99355 * 0.02562 * 19 18 16 21 21 C 1.47423 * 120.00306 * 179.72470 * 19 18 16 22 22 C 1.41293 * 126.41443 * 0.30171 * 21 19 18 23 23 N 1.30451 * 108.01884 * 179.97438 * 22 21 19 24 24 N 1.39929 * 108.90055 * 359.97438 * 23 22 21 25 25 C 1.46503 * 125.75250 * 179.97438 * 24 23 22 26 26 C 1.53786 * 113.61200 * 192.47384 * 25 24 23 27 27 C 1.53781 * 87.08135 * 220.02119 * 26 25 24 28 28 C 1.53782 * 113.61180 * 94.98167 * 25 24 23 29 29 C 1.34255 * 108.49315 * 359.72948 * 24 23 22 30 30 H 1.09000 * 109.47610 * 299.91812 * 1 2 3 31 31 H 1.09002 * 109.47411 * 59.91583 * 1 2 3 32 32 H 1.09003 * 109.47133 * 179.91815 * 1 2 3 33 33 H 1.08992 * 109.47543 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46983 * 300.08525 * 3 2 1 35 35 H 1.09004 * 109.46619 * 60.08120 * 3 2 1 36 36 H 1.09004 * 109.59947 * 174.91127 * 4 2 1 37 37 H 1.08997 * 109.70513 * 54.55074 * 4 2 1 38 38 H 0.97002 * 119.99615 * 180.02562 * 9 8 6 39 39 H 1.09001 * 109.58908 * 293.82133 * 14 5 4 40 40 H 1.09002 * 109.70486 * 173.46486 * 14 5 4 41 41 H 1.08997 * 109.50005 * 185.41186 * 15 14 5 42 42 H 1.09001 * 109.52178 * 65.33569 * 15 14 5 43 43 H 0.97000 * 120.00216 * 264.97005 * 18 16 15 44 44 H 1.07993 * 125.99129 * 359.96640 * 22 21 19 45 45 H 1.09000 * 112.85068 * 323.77998 * 25 24 23 46 46 H 1.08997 * 113.61823 * 334.57023 * 26 25 24 47 47 H 1.09000 * 113.61182 * 105.47298 * 26 25 24 48 48 H 1.09002 * 113.61271 * 270.89118 * 27 26 25 49 49 H 1.09000 * 113.69018 * 139.99317 * 27 26 25 50 50 H 1.09001 * 113.61314 * 254.52765 * 28 25 24 51 51 H 1.08998 * 113.61574 * 25.34521 * 28 25 24 52 52 H 1.08000 * 126.29384 * 180.29747 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0415 -0.7236 -1.2496 5 7 1.6515 -2.1379 -1.1697 6 6 0.9631 -2.7307 -2.1943 7 1 0.3293 -2.1352 -2.8348 8 6 1.0799 -4.0970 -2.4100 9 7 0.1536 -4.7373 -3.0913 10 14 2.5519 -5.0269 -1.7332 11 1 2.2155 -5.5816 -0.3974 12 1 2.9034 -6.1362 -2.6557 13 1 3.7070 -4.1019 -1.6084 14 6 2.0137 -2.9039 0.0305 15 6 1.5027 -2.1556 1.2658 16 6 2.0407 -0.7231 1.2484 17 1 3.1305 -0.7446 1.2351 18 7 1.5811 -0.0145 2.4453 19 6 2.2700 -0.1223 3.5986 20 8 3.2735 -0.8076 3.6455 21 6 1.8108 0.5957 4.8015 22 6 0.6705 1.4243 4.8996 23 7 0.6029 1.8746 6.1220 24 7 1.6802 1.3629 6.8538 25 6 1.9609 1.6330 8.2661 26 6 3.3627 1.1847 8.7122 27 6 2.7082 0.7068 10.0191 28 6 1.4016 0.5647 9.2206 29 6 2.4101 0.5784 6.0450 30 1 -0.3634 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1312 1.4411 -0.0005 34 1 1.6772 1.9566 -0.8892 35 1 1.6796 1.9557 0.8908 36 1 3.1277 -0.6463 -1.2978 37 1 1.6033 -0.2734 -2.1402 38 1 0.2351 -5.6921 -3.2416 39 1 3.0976 -3.0044 0.0867 40 1 1.5569 -3.8926 -0.0127 41 1 1.8476 -2.6628 2.1669 42 1 0.4130 -2.1352 1.2544 43 1 0.7808 0.5324 2.4078 44 1 -0.0233 1.6460 4.1023 45 1 1.7134 2.6532 8.5593 46 1 3.7750 0.3757 8.1091 47 1 4.0616 2.0097 8.8501 48 1 2.6661 1.4739 10.7923 49 1 3.1017 -0.2417 10.3847 50 1 0.5172 0.8892 9.7690 51 1 1.2763 -0.4133 8.7560 52 1 3.3035 0.0357 6.3165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940745631.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:42 Heat of formation + Delta-G solvation = 64.247883 kcal Electronic energy + Delta-G solvation = -31294.897592 eV Core-core repulsion = 27296.555472 eV Total energy + Delta-G solvation = -3998.342121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.55381 -41.20388 -39.65732 -39.08227 -36.41944 -34.50540 -33.64480 -32.90132 -31.96388 -31.07231 -28.13671 -27.86123 -27.25756 -26.74375 -26.07142 -24.28480 -23.12098 -22.88177 -22.30041 -21.10154 -20.22016 -19.90191 -19.01292 -18.65668 -17.46222 -17.17010 -16.80681 -16.62482 -16.22647 -15.95377 -15.69608 -15.54811 -15.39099 -15.32432 -14.95619 -14.72399 -14.32234 -14.05467 -13.95246 -13.93621 -13.82734 -13.42942 -13.30850 -13.20888 -12.97072 -12.70250 -12.61962 -12.43833 -12.39541 -12.17588 -12.10582 -11.97765 -11.81556 -11.65729 -11.52857 -11.48750 -11.37851 -11.18416 -10.88894 -10.67047 -10.56109 -10.03779 -9.61121 -8.90792 -8.14350 -5.44283 0.51096 1.16411 1.29901 1.33803 1.40504 1.48960 2.31697 2.42519 2.50012 3.06673 3.15886 3.35948 3.44725 3.65402 3.70383 3.74853 3.77458 3.80937 3.90756 4.03910 4.10519 4.27601 4.34591 4.36430 4.49280 4.51607 4.53802 4.61422 4.70196 4.72593 4.79171 4.82895 4.91218 4.91718 4.92689 4.95149 4.96330 5.02661 5.04908 5.13874 5.20843 5.26276 5.29836 5.32244 5.42868 5.44994 5.60427 5.70513 5.86811 5.89845 6.16069 6.50752 6.70910 6.92967 7.36367 7.64501 8.06356 9.05246 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019025 B = 0.002440 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.420048 B =11471.820508 C =12199.144014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C -0.130 4.130 4 C 0.155 3.845 5 N -0.612 5.612 6 C -0.234 4.234 7 H 0.061 0.939 8 C -0.032 4.032 9 N -0.954 5.954 10 Si 0.935 3.065 11 H -0.283 1.283 12 H -0.312 1.312 13 H -0.266 1.266 14 C 0.126 3.874 15 C -0.133 4.133 16 C 0.177 3.823 17 H 0.065 0.935 18 N -0.703 5.703 19 C 0.593 3.407 20 O -0.594 6.594 21 C -0.311 4.311 22 C 0.086 3.914 23 N -0.320 5.320 24 N -0.345 5.345 25 C 0.117 3.883 26 C -0.144 4.144 27 C -0.125 4.125 28 C -0.149 4.149 29 C 0.128 3.872 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.260 0.740 39 H 0.023 0.977 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.410 0.590 44 H 0.214 0.786 45 H 0.135 0.865 46 H 0.091 0.909 47 H 0.098 0.902 48 H 0.106 0.894 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.076 0.924 52 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 18.226 26.892 32.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.081 4.081 3 C -0.188 4.188 4 C 0.030 3.970 5 N -0.336 5.336 6 C -0.363 4.363 7 H 0.079 0.921 8 C -0.227 4.227 9 N -0.601 5.601 10 Si 0.766 3.234 11 H -0.210 1.210 12 H -0.241 1.241 13 H -0.190 1.190 14 C 0.000 4.000 15 C -0.174 4.174 16 C 0.072 3.928 17 H 0.084 0.916 18 N -0.353 5.353 19 C 0.383 3.617 20 O -0.476 6.476 21 C -0.326 4.326 22 C -0.102 4.102 23 N -0.139 5.139 24 N -0.123 5.123 25 C 0.017 3.983 26 C -0.183 4.183 27 C -0.163 4.163 28 C -0.187 4.187 29 C -0.024 4.024 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.248 0.752 44 H 0.230 0.770 45 H 0.153 0.847 46 H 0.110 0.890 47 H 0.117 0.883 48 H 0.124 0.876 49 H 0.105 0.895 50 H 0.104 0.896 51 H 0.094 0.906 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.899 18.427 27.815 33.592 hybrid contribution 0.585 -1.593 -0.966 1.953 sum 4.484 16.834 26.849 32.005 Atomic orbital electron populations 1.21748 0.93436 1.01630 1.01771 1.21187 0.97092 0.96081 0.93707 1.21748 1.00768 0.93316 1.02927 1.21177 0.96722 0.82679 0.96443 1.44432 1.65643 1.08247 1.15277 1.18853 1.18054 0.91709 1.07707 0.92089 1.25790 0.99848 0.97839 0.99240 1.69944 1.34439 1.08925 1.46768 0.86084 0.82897 0.78018 0.76427 1.20991 1.24060 1.19025 1.21254 0.96726 0.95122 0.86853 1.22294 1.01526 0.96510 0.97024 1.20598 0.98175 0.90170 0.83888 0.91645 1.45751 1.30088 1.50480 1.09029 1.17541 0.82124 0.79393 0.82681 1.90748 1.27813 1.43447 1.85545 1.20198 1.03793 1.13439 0.95151 1.24450 0.96378 0.94061 0.95288 1.77125 1.08106 1.23122 1.05561 1.48887 1.18646 1.34215 1.10532 1.23617 0.99286 1.02118 0.73299 1.23480 0.94278 1.02741 0.97771 1.22704 0.94170 1.03499 0.95884 1.23440 0.99945 0.98257 0.97082 1.23081 0.97104 0.92842 0.89400 0.91015 0.92545 0.93915 0.93081 0.91302 0.90980 0.95388 0.91523 0.93129 0.95897 0.93222 0.92654 0.91130 0.75245 0.76967 0.84697 0.89015 0.88346 0.87560 0.89456 0.89631 0.90575 0.78614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 7.83 71.98 0.56 -3.01 16 2 C -0.08 -2.26 0.56 -52.10 -0.03 -2.29 16 3 C -0.13 -2.85 8.31 71.98 0.60 -2.25 16 4 C 0.16 5.78 5.20 86.36 0.45 6.23 16 5 N -0.61 -28.49 2.21 -699.10 -1.54 -30.03 16 6 C -0.23 -13.03 10.04 84.03 0.84 -12.18 16 7 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 8 C -0.03 -1.91 5.23 84.86 0.44 -1.47 16 9 N -0.95 -60.16 13.97 21.65 0.30 -59.86 16 10 Si 0.94 48.19 24.35 68.60 1.67 49.86 16 11 H -0.28 -14.10 6.62 99.48 0.66 -13.44 16 12 H -0.31 -16.27 7.11 99.48 0.71 -15.56 16 13 H -0.27 -13.30 6.63 99.48 0.66 -12.64 16 14 C 0.13 5.64 4.20 86.37 0.36 6.01 16 15 C -0.13 -4.92 5.31 30.67 0.16 -4.76 16 16 C 0.18 5.49 1.57 45.02 0.07 5.56 16 17 H 0.07 2.32 7.58 -2.38 -0.02 2.30 16 18 N -0.70 -17.47 4.28 -445.69 -1.91 -19.38 16 19 C 0.59 16.61 7.78 86.66 0.67 17.29 16 20 O -0.59 -21.37 16.56 -4.06 -0.07 -21.44 16 21 C -0.31 -6.98 6.13 -20.15 -0.12 -7.10 16 22 C 0.09 1.60 11.50 85.65 0.99 2.59 16 23 N -0.32 -6.57 12.50 -56.28 -0.70 -7.27 16 24 N -0.35 -5.99 3.77 -323.23 -1.22 -7.21 16 25 C 0.12 1.23 5.02 45.52 0.23 1.46 16 26 C -0.14 -0.94 7.42 31.12 0.23 -0.71 16 27 C -0.12 -0.56 8.08 31.12 0.25 -0.31 16 28 C -0.15 -1.32 7.88 31.12 0.25 -1.07 16 29 C 0.13 2.50 10.50 84.28 0.88 3.38 16 30 H 0.07 1.46 6.58 -2.39 -0.02 1.44 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.50 5.97 -2.39 -0.01 1.48 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 1.30 7.36 -2.39 -0.02 1.28 16 36 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.07 2.48 7.93 -2.39 -0.02 2.46 16 38 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.02 1.05 7.08 -2.39 -0.02 1.03 16 40 H 0.05 2.46 4.50 -2.39 -0.01 2.45 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.07 2.60 6.34 -2.39 -0.02 2.58 16 43 H 0.41 7.69 5.61 -92.71 -0.52 7.17 16 44 H 0.21 2.53 7.50 -2.91 -0.02 2.51 16 45 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 0.69 6.29 -2.39 -0.02 0.68 16 47 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 49 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.20 3.18 6.65 -2.91 -0.02 3.16 16 Total: -1.00 -75.55 395.86 3.69 -71.86 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.31 Total: 16.10 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 6.84 Total: 7.36 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -5.07 Total: -123.75 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.07 Total: -21.44 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.67 Total: 49.86 kcal Total: -75.55 3.69 -71.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940745631.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.110 kcal (2) G-P(sol) polarization free energy of solvation -75.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds