Wall clock time and date at job start Wed Apr 1 2020 04:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.52522 * 2 1 4 4 C 1.52768 * 109.56311 * 240.04959 * 2 1 3 5 5 N 1.46928 * 109.00701 * 185.55450 * 4 2 1 6 6 C 1.36934 * 120.63009 * 233.58630 * 5 4 2 7 7 H 1.08001 * 120.00050 * 152.22348 * 6 5 4 8 8 C 1.38809 * 119.99751 * 332.21557 * 6 5 4 9 9 N 1.31614 * 120.00350 * 335.03508 * 8 6 5 10 10 Si 1.86804 * 119.99809 * 155.03104 * 8 6 5 11 11 H 1.48500 * 109.46888 * 60.00458 * 10 8 6 12 12 H 1.48503 * 109.46987 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47223 * 300.00100 * 10 8 6 14 14 C 1.46933 * 118.73761 * 53.30366 * 5 4 2 15 15 C 1.53191 * 108.78000 * 306.64597 * 14 5 4 16 16 C 1.53040 * 109.49751 * 120.08467 * 2 1 3 17 17 H 1.09003 * 109.44993 * 61.29942 * 16 2 1 18 18 N 1.46501 * 109.45745 * 301.33349 * 16 2 1 19 19 C 1.34777 * 119.99979 * 154.93248 * 18 16 2 20 20 O 1.21606 * 119.99782 * 359.97438 * 19 18 16 21 21 C 1.47431 * 120.00286 * 180.02562 * 19 18 16 22 22 C 1.41287 * 126.41448 * 359.68795 * 21 19 18 23 23 N 1.30446 * 108.02497 * 179.85652 * 22 21 19 24 24 N 1.39933 * 108.89353 * 0.40617 * 23 22 21 25 25 C 1.46505 * 125.75576 * 179.73630 * 24 23 22 26 26 C 1.53776 * 113.61617 * 194.13871 * 25 24 23 27 27 C 1.53956 * 87.01724 * 220.04794 * 26 25 24 28 28 C 1.53775 * 113.61344 * 96.52613 * 25 24 23 29 29 C 1.34260 * 108.49483 * 359.73928 * 24 23 22 30 30 H 1.09002 * 109.47461 * 299.91937 * 1 2 3 31 31 H 1.09001 * 109.47181 * 59.91637 * 1 2 3 32 32 H 1.08999 * 109.47728 * 179.91537 * 1 2 3 33 33 H 1.08995 * 109.47216 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47442 * 300.07926 * 3 2 1 35 35 H 1.09007 * 109.47167 * 60.08234 * 3 2 1 36 36 H 1.08992 * 109.51015 * 65.67011 * 4 2 1 37 37 H 1.08996 * 109.43271 * 305.38308 * 4 2 1 38 38 H 0.97008 * 120.00026 * 354.25254 * 9 8 6 39 39 H 1.09001 * 109.57835 * 66.43808 * 14 5 4 40 40 H 1.08999 * 109.58026 * 186.71206 * 14 5 4 41 41 H 1.08992 * 109.49667 * 174.58454 * 15 14 5 42 42 H 1.08997 * 109.49300 * 294.68669 * 15 14 5 43 43 H 0.96996 * 120.00633 * 334.93655 * 18 16 2 44 44 H 1.08007 * 125.98611 * 359.97438 * 22 21 19 45 45 H 1.08999 * 112.84461 * 325.33600 * 25 24 23 46 46 H 1.08998 * 113.61525 * 334.56378 * 26 25 24 47 47 H 1.09000 * 113.61569 * 105.47433 * 26 25 24 48 48 H 1.09007 * 113.53928 * 270.81298 * 27 26 25 49 49 H 1.08996 * 113.74539 * 139.94636 * 27 26 25 50 50 H 1.09001 * 113.61969 * 254.53517 * 28 25 24 51 51 H 1.09006 * 113.61619 * 25.44031 * 28 25 24 52 52 H 1.08002 * 126.29406 * 179.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0415 -0.7187 -1.2473 5 7 3.5046 -0.8291 -1.1697 6 6 4.2936 -0.3784 -2.1941 7 1 5.2997 -0.0415 -1.9927 8 6 3.8002 -0.3547 -3.4913 9 7 2.8306 -1.1728 -3.8417 10 14 4.5124 0.8385 -4.7398 11 1 5.9622 0.5674 -4.9123 12 1 3.8179 0.6664 -6.0411 13 1 4.3228 2.2304 -4.2583 14 6 4.1052 -1.4267 0.0308 15 6 3.5708 -0.6951 1.2660 16 6 2.0408 -0.7232 1.2483 17 1 1.6966 -1.7574 1.2350 18 7 1.5265 -0.0530 2.4452 19 6 1.3971 -0.7387 3.5983 20 8 1.7069 -1.9137 3.6450 21 6 0.8791 -0.0645 4.8028 22 6 0.4855 1.2888 4.9026 23 7 0.0834 1.5031 6.1249 24 7 0.2076 0.3172 6.8573 25 6 -0.1348 0.1443 8.2712 26 6 0.4213 -1.1510 8.8858 27 6 -0.9207 -1.2792 9.6293 28 6 -1.5387 -0.4406 8.4980 29 6 0.6935 -0.6357 6.0457 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 3.1313 1.4410 -0.0005 34 1 1.6774 1.9566 -0.8892 35 1 1.6797 1.9558 0.8908 36 1 1.7646 -0.1496 -2.1346 37 1 1.6021 -1.7149 -1.2976 38 1 2.5176 -1.8485 -3.2200 39 1 3.8375 -2.4819 0.0866 40 1 5.1897 -1.3269 -0.0150 41 1 3.9333 -1.1898 2.1670 42 1 3.9159 0.3387 1.2540 43 1 1.2790 0.8841 2.4080 44 1 0.5111 2.0176 4.1059 45 1 0.0694 1.0334 8.8678 46 1 0.5933 -1.9419 8.1558 47 1 1.2736 -0.9902 9.5461 48 1 -0.9310 -0.7801 10.5984 49 1 -1.3016 -2.2994 9.6747 50 1 -2.2665 0.2927 8.8455 51 1 -1.9036 -1.0371 7.6618 52 1 0.9012 -1.6605 6.3157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940745632.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:46 Heat of formation + Delta-G solvation = 57.860298 kcal Electronic energy + Delta-G solvation = -31273.718776 eV Core-core repulsion = 27275.099669 eV Total energy + Delta-G solvation = -3998.619107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.56887 -41.22021 -39.66352 -39.09381 -36.45637 -34.35403 -33.93776 -32.78275 -31.60016 -30.68689 -28.20868 -27.75677 -27.18576 -26.74607 -26.07931 -24.39112 -23.15136 -22.42862 -22.30189 -21.12568 -20.21783 -19.89185 -19.46063 -18.81977 -17.23552 -17.06549 -16.80104 -16.33037 -16.21283 -15.89417 -15.69685 -15.47585 -15.43348 -15.18790 -15.00328 -14.87895 -14.28868 -14.00282 -13.95962 -13.92500 -13.59796 -13.43911 -13.21701 -12.96711 -12.89273 -12.66417 -12.49668 -12.42115 -12.40019 -12.15014 -12.08017 -11.89792 -11.76313 -11.66922 -11.65459 -11.49412 -11.35740 -11.12588 -10.86057 -10.57287 -10.43098 -10.06683 -9.63094 -8.89943 -8.20767 -5.35183 0.49421 1.14391 1.32562 1.60958 1.67834 1.86610 2.29169 2.47623 2.68427 3.15829 3.24651 3.44031 3.53569 3.64218 3.69057 3.73600 3.77220 3.79797 3.92073 4.02304 4.08513 4.28676 4.33095 4.35820 4.48343 4.51479 4.57650 4.61527 4.69729 4.72221 4.78693 4.80451 4.88003 4.91366 4.92197 4.94011 4.97942 5.02600 5.04895 5.15240 5.16465 5.25774 5.29186 5.31805 5.40128 5.41800 5.57876 5.65100 5.85666 5.88393 6.42314 6.48958 6.68453 7.07954 7.33623 7.81339 8.26070 9.04324 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029109 B = 0.002176 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.681307 B =12864.227173 C =13102.541759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 C -0.122 4.122 4 C 0.174 3.826 5 N -0.610 5.610 6 C -0.346 4.346 7 H 0.050 0.950 8 C -0.075 4.075 9 N -0.943 5.943 10 Si 1.112 2.888 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.276 1.276 14 C 0.146 3.854 15 C -0.127 4.127 16 C 0.180 3.820 17 H 0.054 0.946 18 N -0.703 5.703 19 C 0.593 3.407 20 O -0.594 6.594 21 C -0.311 4.311 22 C 0.085 3.915 23 N -0.319 5.319 24 N -0.345 5.345 25 C 0.116 3.884 26 C -0.145 4.145 27 C -0.124 4.124 28 C -0.148 4.148 29 C 0.130 3.870 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.054 0.946 37 H -0.008 1.008 38 H 0.252 0.748 39 H 0.005 0.995 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.409 0.591 44 H 0.213 0.787 45 H 0.135 0.865 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.077 0.923 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 5.615 28.048 30.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.083 4.083 3 C -0.180 4.180 4 C 0.047 3.953 5 N -0.333 5.333 6 C -0.476 4.476 7 H 0.068 0.932 8 C -0.271 4.271 9 N -0.585 5.585 10 Si 0.937 3.063 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.202 1.202 14 C 0.020 3.980 15 C -0.167 4.167 16 C 0.075 3.925 17 H 0.073 0.927 18 N -0.353 5.353 19 C 0.383 3.617 20 O -0.476 6.476 21 C -0.326 4.326 22 C -0.102 4.102 23 N -0.138 5.138 24 N -0.122 5.122 25 C 0.016 3.984 26 C -0.184 4.184 27 C -0.162 4.162 28 C -0.186 4.186 29 C -0.023 4.023 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.010 0.990 38 H 0.062 0.938 39 H 0.023 0.977 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.247 0.753 44 H 0.230 0.770 45 H 0.152 0.848 46 H 0.110 0.890 47 H 0.115 0.885 48 H 0.124 0.876 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.096 0.904 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.495 6.255 27.500 29.758 hybrid contribution 0.586 -1.346 0.371 1.515 sum -8.909 4.909 27.872 29.670 Atomic orbital electron populations 1.21748 0.93082 1.01472 1.02542 1.21150 0.96133 0.96966 0.94096 1.21695 1.01280 0.93672 1.01321 1.20745 0.83258 0.95290 0.95969 1.44295 1.01703 1.70152 1.17195 1.20155 0.99226 1.39720 0.88490 0.93172 1.27108 0.99845 1.01813 0.98340 1.70903 1.32543 1.17758 1.37276 0.82899 0.75144 0.74641 0.73663 1.20511 1.22061 1.20232 1.20947 0.96696 0.93729 0.86625 1.22231 0.95618 1.01448 0.97420 1.20520 0.92905 0.95623 0.83457 0.92745 1.45762 1.65813 1.14771 1.09003 1.17561 0.76250 0.85254 0.82665 1.90743 1.53461 1.17804 1.85603 1.20179 1.21143 0.96167 0.95090 1.24441 0.95179 0.95189 0.95410 1.77125 1.25153 1.05900 1.05648 1.48900 1.46642 1.06321 1.10376 1.23629 0.98543 1.01185 0.75041 1.23523 0.99998 0.94766 1.00106 1.22731 0.94103 1.01670 0.97703 1.23439 0.95348 0.99997 0.99820 1.23071 0.93395 0.96544 0.89301 0.90336 0.92415 0.93883 0.93159 0.93565 0.90663 0.92736 0.98989 0.93796 0.97713 0.92779 0.92280 0.90941 0.75306 0.77042 0.84759 0.89002 0.88465 0.87605 0.89354 0.89546 0.90422 0.78553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 8.31 71.98 0.60 -3.28 16 2 C -0.08 -2.84 0.56 -52.25 -0.03 -2.87 16 3 C -0.12 -3.91 7.82 71.98 0.56 -3.35 16 4 C 0.17 8.15 3.33 86.22 0.29 8.44 16 5 N -0.61 -30.64 2.30 -699.91 -1.61 -32.25 16 6 C -0.35 -19.24 9.49 84.03 0.80 -18.44 16 7 H 0.05 2.80 7.94 -2.91 -0.02 2.77 16 8 C -0.07 -4.24 4.68 84.86 0.40 -3.85 16 9 N -0.94 -57.65 12.41 21.65 0.27 -57.38 16 10 Si 1.11 50.79 29.99 68.60 2.06 52.85 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 13 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 14 C 0.15 6.47 6.52 86.36 0.56 7.03 16 15 C -0.13 -4.65 5.31 30.67 0.16 -4.48 16 16 C 0.18 6.16 1.57 45.02 0.07 6.24 16 17 H 0.05 2.19 7.57 -2.39 -0.02 2.17 16 18 N -0.70 -18.95 4.28 -445.66 -1.91 -20.86 16 19 C 0.59 17.46 7.78 86.66 0.67 18.13 16 20 O -0.59 -22.22 16.56 -4.05 -0.07 -22.28 16 21 C -0.31 -7.27 6.13 -20.15 -0.12 -7.39 16 22 C 0.09 1.67 11.50 85.65 0.99 2.66 16 23 N -0.32 -6.74 12.50 -56.27 -0.70 -7.44 16 24 N -0.34 -6.14 3.77 -323.26 -1.22 -7.36 16 25 C 0.12 1.26 5.01 45.51 0.23 1.48 16 26 C -0.15 -1.00 7.45 31.18 0.23 -0.77 16 27 C -0.12 -0.56 8.09 31.18 0.25 -0.31 16 28 C -0.15 -1.28 7.88 31.12 0.25 -1.04 16 29 C 0.13 2.60 10.50 84.28 0.88 3.48 16 30 H 0.08 1.85 7.36 -2.39 -0.02 1.83 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.84 5.97 -2.39 -0.01 1.83 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.74 6.58 -2.38 -0.02 1.72 16 36 H 0.05 2.88 6.30 -2.39 -0.02 2.87 16 37 H -0.01 -0.40 7.87 -2.39 -0.02 -0.42 16 38 H 0.25 15.88 6.71 -92.70 -0.62 15.26 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.05 2.38 7.93 -2.39 -0.02 2.36 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.07 2.55 6.33 -2.39 -0.02 2.54 16 43 H 0.41 8.54 5.62 -92.71 -0.52 8.02 16 44 H 0.21 2.75 7.50 -2.91 -0.02 2.73 16 45 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.09 0.72 6.29 -2.39 -0.02 0.71 16 47 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 49 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 52 H 0.20 3.29 6.66 -2.91 -0.02 3.27 16 Total: -1.00 -74.46 401.26 4.16 -70.30 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.55 Total: 22.76 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 6.79 Total: 1.68 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -5.17 Total: -125.30 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.07 Total: -22.28 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.06 Total: 52.85 kcal Total: -74.46 4.16 -70.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940745632.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.158 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds