Wall clock time and date at job start Wed Apr 1 2020 04:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.52158 * 2 1 4 4 C 1.53189 * 109.49603 * 239.92240 * 2 1 3 5 5 N 1.46925 * 108.77301 * 294.68223 * 4 2 1 6 6 C 1.36942 * 120.63351 * 126.41835 * 5 4 2 7 7 H 1.08002 * 119.99551 * 332.29169 * 6 5 4 8 8 C 1.38811 * 120.00375 * 152.28903 * 6 5 4 9 9 N 1.31617 * 120.00151 * 342.59283 * 8 6 5 10 10 Si 1.86799 * 119.99770 * 162.59033 * 8 6 5 11 11 H 1.48500 * 109.47026 * 94.35237 * 10 8 6 12 12 H 1.48506 * 109.46977 * 214.34785 * 10 8 6 13 13 H 1.48498 * 109.47327 * 334.34879 * 10 8 6 14 14 C 1.46924 * 118.74238 * 306.38900 * 5 4 2 15 15 C 1.53194 * 108.77305 * 53.60668 * 14 5 4 16 16 C 1.53037 * 109.49806 * 120.08204 * 2 1 3 17 17 H 1.09008 * 109.45943 * 178.59230 * 16 2 1 18 18 N 1.46492 * 109.46128 * 298.56325 * 16 2 1 19 19 C 1.34777 * 120.00201 * 205.00161 * 18 16 2 20 20 O 1.21283 * 119.99928 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00200 * 180.02562 * 19 18 16 22 22 H 1.08998 * 109.71311 * 59.38584 * 21 19 18 23 23 C 1.53384 * 109.71989 * 180.02562 * 21 19 18 24 24 C 1.53025 * 109.67731 * 170.23963 * 23 21 19 25 25 C 1.53390 * 109.73654 * 288.19231 * 24 23 21 26 26 C 1.50952 * 108.16911 * 50.72348 * 25 24 23 27 27 N 1.30123 * 128.28261 * 163.13487 * 26 25 24 28 28 N 1.40315 * 108.12249 * 180.30650 * 27 26 25 29 29 H 0.97005 * 126.00384 * 179.91654 * 28 27 26 30 30 C 1.35199 * 107.99310 * 359.95719 * 28 27 26 31 31 C 1.34570 * 107.61643 * 359.96383 * 30 28 27 32 32 H 1.08998 * 109.46466 * 299.91835 * 1 2 3 33 33 H 1.08997 * 109.47115 * 59.91797 * 1 2 3 34 34 H 1.08998 * 109.46825 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.46761 * 180.08631 * 3 2 1 36 36 H 1.09001 * 109.46889 * 300.08038 * 3 2 1 37 37 H 1.08998 * 109.47101 * 60.08595 * 3 2 1 38 38 H 1.09006 * 109.59008 * 54.46916 * 4 2 1 39 39 H 1.08998 * 109.58742 * 174.89433 * 4 2 1 40 40 H 0.97000 * 120.00121 * 179.97438 * 9 8 6 41 41 H 1.08995 * 109.59432 * 173.39765 * 14 5 4 42 42 H 1.08999 * 109.58643 * 293.82755 * 14 5 4 43 43 H 1.08995 * 109.50209 * 185.41506 * 15 14 5 44 44 H 1.09007 * 109.49390 * 65.32062 * 15 14 5 45 45 H 0.97000 * 120.00245 * 25.00260 * 18 16 2 46 46 H 1.09007 * 109.42684 * 290.28745 * 23 21 19 47 47 H 1.08998 * 109.43342 * 50.18228 * 23 21 19 48 48 H 1.08996 * 109.42640 * 48.33074 * 24 23 21 49 49 H 1.09007 * 109.42134 * 168.15673 * 24 23 21 50 50 H 1.09001 * 109.76209 * 291.04432 * 25 24 23 51 51 H 1.08999 * 109.70991 * 170.38118 * 25 24 23 52 52 H 1.07996 * 126.19202 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4421 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 1.6515 -2.1381 -1.1696 6 6 0.9639 -2.7314 -2.1945 7 1 0.3258 -2.1372 -2.8318 8 6 1.0871 -4.0965 -2.4143 9 7 2.0946 -4.7596 -1.8876 10 14 -0.1772 -4.9922 -3.4577 11 1 0.3032 -5.0681 -4.8608 12 1 -0.3739 -6.3651 -2.9269 13 1 -1.4659 -4.2556 -3.4148 14 6 2.0141 -2.9040 0.0306 15 6 1.5032 -2.1558 1.2659 16 6 2.0409 -0.7231 1.2483 17 1 3.1307 -0.7446 1.2351 18 7 1.5813 -0.0145 2.4452 19 6 2.2700 -0.1228 3.5986 20 8 3.2705 -0.8066 3.6456 21 6 1.7968 0.6057 4.8301 22 1 0.7894 0.2780 5.0869 23 6 2.7484 0.3194 5.9985 24 6 2.4138 1.2411 7.1733 25 6 2.8454 2.6760 6.8452 26 6 2.2813 3.0397 5.4931 27 7 2.1442 4.2225 4.9685 28 7 1.5678 4.0723 3.6980 29 1 1.3510 4.7894 3.0818 30 6 1.3668 2.7526 3.4840 31 6 1.7991 2.0927 4.5742 32 1 -0.3632 0.5126 0.8907 33 1 -0.3633 0.5151 -0.8892 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1314 1.4411 -0.0015 36 1 1.6773 1.9566 -0.8893 37 1 1.6797 1.9558 0.8907 38 1 1.6007 -0.2730 -2.1390 39 1 3.1275 -0.6462 -1.2981 40 1 2.1804 -5.7136 -2.0409 41 1 1.5555 -3.8918 -0.0138 42 1 3.0980 -3.0042 0.0866 43 1 1.8482 -2.6628 2.1670 44 1 0.4134 -2.1355 1.2541 45 1 0.7812 0.5327 2.4077 46 1 2.6380 -0.7194 6.3098 47 1 3.7761 0.4954 5.6807 48 1 1.3398 1.2179 7.3579 49 1 2.9412 0.8992 8.0639 50 1 3.9334 2.7365 6.8181 51 1 2.4574 3.3585 7.6013 52 1 0.9373 2.3083 2.5983 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940747873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:35 Heat of formation + Delta-G solvation = 46.504146 kcal Electronic energy + Delta-G solvation = -32445.466492 eV Core-core repulsion = 28446.354946 eV Total energy + Delta-G solvation = -3999.111547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.86225 -39.96075 -38.31795 -36.37756 -34.64533 -33.24795 -32.48444 -31.33844 -30.80084 -29.68822 -28.82740 -26.98252 -25.95938 -25.58711 -24.53554 -22.56385 -21.85471 -21.39788 -20.71743 -20.21959 -19.05266 -18.18289 -17.85561 -16.98379 -16.54800 -15.70990 -15.48807 -15.30885 -14.73607 -14.70027 -14.30640 -14.20788 -14.05395 -13.72146 -13.44443 -13.40242 -13.26726 -12.97005 -12.85457 -12.59256 -12.28104 -12.12856 -11.81610 -11.51256 -11.45660 -11.36292 -11.22926 -11.04093 -11.02463 -10.91871 -10.69217 -10.61728 -10.60691 -10.40915 -10.17639 -9.98256 -9.77723 -9.69283 -9.62681 -9.41598 -8.68073 -8.62597 -8.39791 -6.68109 -5.79213 -3.21507 1.63728 2.39891 2.57505 2.92882 3.35897 3.43740 3.44067 3.45613 4.18673 4.44480 4.48160 4.61628 4.71766 4.77470 5.02599 5.09260 5.20548 5.23552 5.24515 5.29482 5.30973 5.37478 5.41618 5.56370 5.57802 5.69333 5.77678 5.81773 5.84356 5.88931 5.90983 5.97936 6.06780 6.11322 6.22138 6.23596 6.33291 6.36230 6.41438 6.47031 6.56115 6.66247 6.78031 6.80730 6.94937 6.98935 7.01521 7.38108 7.41877 7.67401 7.74646 7.79021 8.43573 8.46779 9.20180 9.83778 10.40309 11.29142 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020899 B = 0.002853 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.450017 B = 9812.950512 C =10634.450399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.136 4.136 4 C 0.160 3.840 5 N -0.588 5.588 6 C -0.252 4.252 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.900 5.900 10 Si 0.900 3.100 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.149 4.149 16 C 0.163 3.837 17 H 0.081 0.919 18 N -0.723 5.723 19 C 0.519 3.481 20 O -0.535 6.535 21 C -0.028 4.028 22 H 0.100 0.900 23 C -0.099 4.099 24 C -0.115 4.115 25 C -0.040 4.040 26 C 0.091 3.909 27 N -0.289 5.289 28 N -0.481 5.481 29 H 0.440 0.560 30 C 0.067 3.933 31 C -0.229 4.229 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.254 0.746 41 H 0.089 0.911 42 H 0.019 0.981 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.389 0.611 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.085 0.915 51 H 0.082 0.918 52 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 16.112 15.327 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.092 4.092 3 C -0.194 4.194 4 C 0.033 3.967 5 N -0.310 5.310 6 C -0.382 4.382 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.544 5.544 10 Si 0.730 3.270 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.048 3.952 15 C -0.189 4.189 16 C 0.060 3.940 17 H 0.099 0.901 18 N -0.375 5.375 19 C 0.304 3.696 20 O -0.411 6.411 21 C -0.051 4.051 22 H 0.118 0.882 23 C -0.137 4.137 24 C -0.153 4.153 25 C -0.080 4.080 26 C -0.078 4.078 27 N -0.111 5.111 28 N -0.189 5.189 29 H 0.284 0.716 30 C -0.079 4.079 31 C -0.241 4.241 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.225 0.775 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.104 0.896 51 H 0.101 0.899 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.136 16.660 15.465 22.832 hybrid contribution -1.332 -0.696 -1.276 1.971 sum -3.468 15.964 14.189 21.638 Atomic orbital electron populations 1.21797 0.94491 1.03221 0.99319 1.21362 0.96329 0.94441 0.97049 1.21849 1.01061 0.96041 1.00473 1.20890 0.96169 0.86306 0.93366 1.44050 1.65068 1.05335 1.16552 1.19131 1.18920 0.91503 1.08626 0.91729 1.25033 0.97149 0.98139 0.99251 1.70039 1.28260 1.08196 1.47907 0.86331 0.81502 0.79260 0.79949 1.21533 1.21602 1.20482 1.20754 0.96879 0.95580 0.82034 1.22622 1.00752 0.94853 1.00712 1.20993 0.99280 0.91764 0.82003 0.90139 1.46460 1.29478 1.50840 1.10744 1.20443 0.83661 0.81098 0.84380 1.90706 1.25377 1.40459 1.84572 1.19779 1.01369 0.89680 0.94256 0.88192 1.21395 0.99714 0.99784 0.92824 1.21594 1.01917 0.93462 0.98332 1.20182 1.00714 0.97140 0.89917 1.22331 0.98179 0.89824 0.97422 1.77009 1.18899 1.21920 0.93254 1.46292 1.50955 1.06575 1.15048 0.71570 1.22208 1.01000 0.84873 0.99848 1.19679 1.12834 0.95370 0.96186 0.94998 0.93114 0.90428 0.92834 0.92680 0.93929 0.92462 0.96338 0.93612 0.89267 0.96275 0.92853 0.92251 0.77520 0.90695 0.90513 0.91412 0.90568 0.89627 0.89936 0.80869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 7.83 37.16 0.29 -1.60 16 2 C -0.09 -1.38 0.56 -154.39 -0.09 -1.46 16 3 C -0.14 -1.71 8.31 37.16 0.31 -1.40 16 4 C 0.16 3.16 5.20 -3.71 -0.02 3.14 16 5 N -0.59 -13.99 2.43 -172.32 -0.42 -14.41 16 6 C -0.25 -6.64 9.58 -15.06 -0.14 -6.78 16 7 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 8 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -25.84 11.19 55.49 0.62 -25.22 16 10 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.17 4.10 5.31 -3.71 -0.02 4.08 16 15 C -0.15 -2.86 5.31 -26.61 -0.14 -3.00 16 16 C 0.16 2.70 1.57 -67.90 -0.11 2.59 16 17 H 0.08 1.56 7.58 -51.92 -0.39 1.17 16 18 N -0.72 -9.57 3.69 -53.77 -0.20 -9.77 16 19 C 0.52 7.41 7.03 -10.98 -0.08 7.33 16 20 O -0.53 -9.86 15.51 5.55 0.09 -9.77 16 21 C -0.03 -0.31 2.89 -92.63 -0.27 -0.58 16 22 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 23 C -0.10 -1.01 4.62 -26.52 -0.12 -1.13 16 24 C -0.12 -0.86 5.86 -26.52 -0.16 -1.01 16 25 C -0.04 -0.33 6.31 -27.56 -0.17 -0.51 16 26 C 0.09 1.00 7.10 -82.35 -0.58 0.41 16 27 N -0.29 -3.34 12.68 33.75 0.43 -2.91 16 28 N -0.48 -4.44 7.37 30.35 0.22 -4.21 16 29 H 0.44 2.70 8.96 -182.43 -1.64 1.06 16 30 C 0.07 0.64 10.97 -17.37 -0.19 0.45 16 31 C -0.23 -2.46 5.41 -104.98 -0.57 -3.02 16 32 H 0.03 0.36 6.58 -51.93 -0.34 0.02 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.44 5.48 -51.93 -0.28 0.15 16 38 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.11 6.33 -51.92 -0.33 0.78 16 45 H 0.39 4.18 4.52 -40.82 -0.18 3.99 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 0.92 7.75 -51.93 -0.40 0.51 16 48 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.17 1.36 4.16 -52.49 -0.22 1.14 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -32.32 387.73 -10.03 -42.36 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -9.44 Total: 4.34 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.14 Total: -2.49 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.66 Total: -56.52 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.32 -10.03 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940747873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.860 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds