Wall clock time and date at job start Wed Apr 1 2020 04:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.52158 * 2 1 4 4 C 1.53189 * 109.49603 * 239.92240 * 2 1 3 5 5 N 1.46925 * 108.77301 * 294.68223 * 4 2 1 6 6 C 1.36942 * 120.63351 * 126.41835 * 5 4 2 7 7 H 1.08002 * 119.99551 * 332.29169 * 6 5 4 8 8 C 1.38811 * 120.00375 * 152.28903 * 6 5 4 9 9 N 1.31617 * 120.00151 * 342.59283 * 8 6 5 10 10 Si 1.86799 * 119.99770 * 162.59033 * 8 6 5 11 11 H 1.48500 * 109.47026 * 94.35237 * 10 8 6 12 12 H 1.48506 * 109.46977 * 214.34785 * 10 8 6 13 13 H 1.48498 * 109.47327 * 334.34879 * 10 8 6 14 14 C 1.46924 * 118.74238 * 306.38900 * 5 4 2 15 15 C 1.53194 * 108.77305 * 53.60668 * 14 5 4 16 16 C 1.53037 * 109.49806 * 120.08204 * 2 1 3 17 17 H 1.09008 * 109.45943 * 178.59230 * 16 2 1 18 18 N 1.46492 * 109.46128 * 298.56325 * 16 2 1 19 19 C 1.34777 * 120.00201 * 205.00161 * 18 16 2 20 20 O 1.21283 * 119.99928 * 0.02562 * 19 18 16 21 21 C 1.50703 * 120.00200 * 180.02562 * 19 18 16 22 22 H 1.08998 * 109.71311 * 59.38584 * 21 19 18 23 23 C 1.53384 * 109.71989 * 180.02562 * 21 19 18 24 24 C 1.53025 * 109.67731 * 170.23963 * 23 21 19 25 25 C 1.53390 * 109.73654 * 288.19231 * 24 23 21 26 26 C 1.50952 * 108.16911 * 50.72348 * 25 24 23 27 27 N 1.30123 * 128.28261 * 163.13487 * 26 25 24 28 28 N 1.40315 * 108.12249 * 180.30650 * 27 26 25 29 29 H 0.97005 * 126.00384 * 179.91654 * 28 27 26 30 30 C 1.35199 * 107.99310 * 359.95719 * 28 27 26 31 31 C 1.34570 * 107.61643 * 359.96383 * 30 28 27 32 32 H 1.08998 * 109.46466 * 299.91835 * 1 2 3 33 33 H 1.08997 * 109.47115 * 59.91797 * 1 2 3 34 34 H 1.08998 * 109.46825 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.46761 * 180.08631 * 3 2 1 36 36 H 1.09001 * 109.46889 * 300.08038 * 3 2 1 37 37 H 1.08998 * 109.47101 * 60.08595 * 3 2 1 38 38 H 1.09006 * 109.59008 * 54.46916 * 4 2 1 39 39 H 1.08998 * 109.58742 * 174.89433 * 4 2 1 40 40 H 0.97000 * 120.00121 * 179.97438 * 9 8 6 41 41 H 1.08995 * 109.59432 * 173.39765 * 14 5 4 42 42 H 1.08999 * 109.58643 * 293.82755 * 14 5 4 43 43 H 1.08995 * 109.50209 * 185.41506 * 15 14 5 44 44 H 1.09007 * 109.49390 * 65.32062 * 15 14 5 45 45 H 0.97000 * 120.00245 * 25.00260 * 18 16 2 46 46 H 1.09007 * 109.42684 * 290.28745 * 23 21 19 47 47 H 1.08998 * 109.43342 * 50.18228 * 23 21 19 48 48 H 1.08996 * 109.42640 * 48.33074 * 24 23 21 49 49 H 1.09007 * 109.42134 * 168.15673 * 24 23 21 50 50 H 1.09001 * 109.76209 * 291.04432 * 25 24 23 51 51 H 1.08999 * 109.70991 * 170.38118 * 25 24 23 52 52 H 1.07996 * 126.19202 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4421 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 1.6515 -2.1381 -1.1696 6 6 0.9639 -2.7314 -2.1945 7 1 0.3258 -2.1372 -2.8318 8 6 1.0871 -4.0965 -2.4143 9 7 2.0946 -4.7596 -1.8876 10 14 -0.1772 -4.9922 -3.4577 11 1 0.3032 -5.0681 -4.8608 12 1 -0.3739 -6.3651 -2.9269 13 1 -1.4659 -4.2556 -3.4148 14 6 2.0141 -2.9040 0.0306 15 6 1.5032 -2.1558 1.2659 16 6 2.0409 -0.7231 1.2483 17 1 3.1307 -0.7446 1.2351 18 7 1.5813 -0.0145 2.4452 19 6 2.2700 -0.1228 3.5986 20 8 3.2705 -0.8066 3.6456 21 6 1.7968 0.6057 4.8301 22 1 0.7894 0.2780 5.0869 23 6 2.7484 0.3194 5.9985 24 6 2.4138 1.2411 7.1733 25 6 2.8454 2.6760 6.8452 26 6 2.2813 3.0397 5.4931 27 7 2.1442 4.2225 4.9685 28 7 1.5678 4.0723 3.6980 29 1 1.3510 4.7894 3.0818 30 6 1.3668 2.7526 3.4840 31 6 1.7991 2.0927 4.5742 32 1 -0.3632 0.5126 0.8907 33 1 -0.3633 0.5151 -0.8892 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1314 1.4411 -0.0015 36 1 1.6773 1.9566 -0.8893 37 1 1.6797 1.9558 0.8907 38 1 1.6007 -0.2730 -2.1390 39 1 3.1275 -0.6462 -1.2981 40 1 2.1804 -5.7136 -2.0409 41 1 1.5555 -3.8918 -0.0138 42 1 3.0980 -3.0042 0.0866 43 1 1.8482 -2.6628 2.1670 44 1 0.4134 -2.1355 1.2541 45 1 0.7812 0.5327 2.4077 46 1 2.6380 -0.7194 6.3098 47 1 3.7761 0.4954 5.6807 48 1 1.3398 1.2179 7.3579 49 1 2.9412 0.8992 8.0639 50 1 3.9334 2.7365 6.8181 51 1 2.4574 3.3585 7.6013 52 1 0.9373 2.3083 2.5983 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940747873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:34 Heat of formation + Delta-G solvation = 26.378768 kcal Electronic energy + Delta-G solvation = -32446.339194 eV Core-core repulsion = 28446.354946 eV Total energy + Delta-G solvation = -3999.984249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.65035 -41.22358 -39.64976 -37.21044 -36.30898 -34.59620 -33.48311 -33.06206 -31.77270 -31.12448 -29.60327 -28.13647 -27.48453 -27.04064 -25.69382 -23.99490 -22.69518 -22.43988 -22.31897 -21.37914 -19.78769 -19.49926 -18.75448 -18.65911 -17.84442 -17.09215 -16.62227 -16.38302 -16.09431 -15.73029 -15.66616 -15.38566 -15.28699 -15.06410 -14.84619 -14.62823 -14.32500 -14.19844 -13.99555 -13.70829 -13.39301 -13.12980 -13.03285 -12.92810 -12.82543 -12.69934 -12.57209 -12.31208 -12.24062 -12.18984 -12.03588 -11.99622 -11.96072 -11.70912 -11.59894 -11.42310 -11.32093 -11.14811 -10.74218 -10.54116 -10.36412 -9.92201 -9.43927 -8.67303 -7.85179 -5.30209 0.90050 1.47387 1.49364 1.55216 1.58893 1.79902 1.96103 2.31583 2.52653 3.30706 3.44829 3.63599 3.71704 3.73427 3.77981 3.95012 3.99617 4.02516 4.16627 4.36276 4.40559 4.45758 4.48393 4.52097 4.58457 4.65338 4.69125 4.71968 4.81664 4.84973 4.90827 4.95879 5.02709 5.05163 5.06596 5.12983 5.17110 5.21127 5.21624 5.25790 5.31013 5.40146 5.44038 5.50388 5.60906 5.63924 5.65245 5.67655 5.76401 6.39903 6.40858 6.62297 6.69195 7.15313 7.34291 7.86663 8.39691 9.21686 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020899 B = 0.002853 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.450017 B = 9812.950512 C =10634.450399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.131 4.131 4 C 0.155 3.845 5 N -0.601 5.601 6 C -0.253 4.253 7 H 0.073 0.927 8 C -0.054 4.054 9 N -0.939 5.939 10 Si 0.965 3.035 11 H -0.289 1.289 12 H -0.297 1.297 13 H -0.265 1.265 14 C 0.184 3.816 15 C -0.133 4.133 16 C 0.176 3.824 17 H 0.048 0.952 18 N -0.707 5.707 19 C 0.517 3.483 20 O -0.581 6.581 21 C -0.018 4.018 22 H 0.124 0.876 23 C -0.100 4.100 24 C -0.105 4.105 25 C -0.042 4.042 26 C 0.082 3.918 27 N -0.316 5.316 28 N -0.472 5.472 29 H 0.453 0.547 30 C 0.074 3.926 31 C -0.248 4.248 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.001 0.999 40 H 0.248 0.752 41 H 0.055 0.945 42 H -0.018 1.018 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.407 0.593 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.097 0.903 52 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 18.913 16.238 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.079 4.079 3 C -0.188 4.188 4 C 0.029 3.971 5 N -0.323 5.323 6 C -0.383 4.383 7 H 0.091 0.909 8 C -0.249 4.249 9 N -0.585 5.585 10 Si 0.794 3.206 11 H -0.216 1.216 12 H -0.224 1.224 13 H -0.189 1.189 14 C 0.058 3.942 15 C -0.173 4.173 16 C 0.071 3.929 17 H 0.067 0.933 18 N -0.360 5.360 19 C 0.304 3.696 20 O -0.460 6.460 21 C -0.040 4.040 22 H 0.142 0.858 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.081 4.081 26 C -0.086 4.086 27 N -0.139 5.139 28 N -0.182 5.182 29 H 0.300 0.700 30 C -0.073 4.073 31 C -0.260 4.260 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.019 0.981 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.000 1.000 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.246 0.754 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.112 0.888 50 H 0.103 0.897 51 H 0.115 0.885 52 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.667 19.545 16.378 25.924 hybrid contribution -0.481 -1.532 -1.593 2.262 sum -5.148 18.013 14.785 23.866 Atomic orbital electron populations 1.21744 0.92821 1.01966 1.01861 1.21180 0.97450 0.95597 0.93723 1.21804 1.00384 0.93773 1.02847 1.21083 0.95371 0.84530 0.96157 1.44232 1.65087 1.06863 1.16126 1.19505 1.18454 0.91798 1.08518 0.90939 1.25810 0.98908 0.99114 1.01109 1.70214 1.30307 1.07919 1.50071 0.85296 0.79701 0.77626 0.78022 1.21577 1.22378 1.18925 1.20441 0.94378 0.95036 0.84388 1.22365 1.01102 0.96137 0.97718 1.20569 0.97364 0.90789 0.84199 0.93331 1.46168 1.29943 1.50389 1.09460 1.21163 0.82789 0.80342 0.85266 1.90699 1.27519 1.42525 1.85298 1.19745 1.02457 0.89544 0.92251 0.85789 1.21400 0.98271 1.00419 0.93733 1.21549 1.02857 0.92255 0.97603 1.20297 1.00691 0.97823 0.89318 1.22723 0.97877 0.89657 0.98356 1.76974 1.20022 1.22528 0.94384 1.46330 1.50163 1.07025 1.14655 0.70035 1.22450 1.00061 0.84892 0.99902 1.19743 1.14156 0.95045 0.97062 0.91075 0.92017 0.93538 0.94021 0.90837 0.91024 0.91792 0.98073 0.94318 0.92638 0.99969 0.93780 0.91142 0.75437 0.90991 0.92940 0.90240 0.88776 0.89695 0.88463 0.79024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 7.83 71.98 0.56 -2.67 16 2 C -0.08 -2.25 0.56 -52.10 -0.03 -2.28 16 3 C -0.13 -2.84 8.31 71.98 0.60 -2.24 16 4 C 0.15 6.10 5.20 86.36 0.45 6.55 16 5 N -0.60 -29.32 2.43 -699.10 -1.70 -31.02 16 6 C -0.25 -13.45 9.58 84.03 0.81 -12.64 16 7 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 8 C -0.05 -3.02 4.91 84.86 0.42 -2.61 16 9 N -0.94 -56.37 11.19 21.65 0.24 -56.13 16 10 Si 0.97 44.47 29.59 68.60 2.03 46.50 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 13 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 14 C 0.18 9.19 5.31 86.36 0.46 9.65 16 15 C -0.13 -5.21 5.31 30.67 0.16 -5.05 16 16 C 0.18 5.75 1.57 45.02 0.07 5.82 16 17 H 0.05 1.94 7.58 -2.38 -0.02 1.92 16 18 N -0.71 -17.22 3.69 -442.42 -1.63 -18.86 16 19 C 0.52 14.17 7.03 87.66 0.62 14.78 16 20 O -0.58 -21.81 15.51 -3.04 -0.05 -21.85 16 21 C -0.02 -0.35 2.89 -12.10 -0.04 -0.38 16 22 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 23 C -0.10 -1.91 4.62 30.73 0.14 -1.77 16 24 C -0.10 -1.31 5.86 30.73 0.18 -1.13 16 25 C -0.04 -0.61 6.31 30.06 0.19 -0.42 16 26 C 0.08 1.61 7.10 43.44 0.31 1.92 16 27 N -0.32 -6.60 12.68 -47.14 -0.60 -7.20 16 28 N -0.47 -7.25 7.37 -57.89 -0.43 -7.68 16 29 H 0.45 4.07 8.96 -213.18 -1.91 2.16 16 30 C 0.07 1.15 10.97 83.33 0.91 2.06 16 31 C -0.25 -4.66 5.41 -20.10 -0.11 -4.76 16 32 H 0.07 1.25 6.58 -2.39 -0.02 1.23 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.51 5.97 -2.39 -0.01 1.50 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.14 5.48 -2.39 -0.01 1.13 16 38 H 0.06 2.41 7.93 -2.38 -0.02 2.40 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.06 3.13 6.04 -2.39 -0.01 3.11 16 42 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 2.61 6.33 -2.38 -0.02 2.60 16 45 H 0.41 7.07 4.52 -92.71 -0.42 6.65 16 46 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 47 H 0.05 1.25 7.75 -2.39 -0.02 1.24 16 48 H 0.08 0.84 8.10 -2.39 -0.02 0.82 16 49 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 50 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 51 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.19 2.05 4.16 -2.91 -0.01 2.04 16 Total: -1.00 -74.92 387.73 2.19 -72.72 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -1.38 Total: 18.68 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.70 Total: 4.84 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -4.12 Total: -120.89 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -74.92 2.19 -72.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940747873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.102 kcal (2) G-P(sol) polarization free energy of solvation -74.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds