Wall clock time and date at job start Wed Apr 1 2020 04:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.52376 * 2 1 4 4 C 1.53185 * 109.49610 * 239.91809 * 2 1 3 5 5 N 1.46929 * 108.77757 * 294.68549 * 4 2 1 6 6 C 1.36940 * 120.63290 * 126.37032 * 5 4 2 7 7 H 1.07998 * 119.99576 * 332.64085 * 6 5 4 8 8 C 1.38805 * 120.00330 * 152.64149 * 6 5 4 9 9 N 1.31616 * 120.00118 * 159.36466 * 8 6 5 10 10 Si 1.86800 * 119.99892 * 339.36460 * 8 6 5 11 11 H 1.48501 * 109.47373 * 92.93032 * 10 8 6 12 12 H 1.48503 * 109.47370 * 212.93448 * 10 8 6 13 13 H 1.48505 * 109.47230 * 332.93077 * 10 8 6 14 14 C 1.46926 * 118.73960 * 306.39502 * 5 4 2 15 15 C 1.53191 * 108.77667 * 53.60491 * 14 5 4 16 16 C 1.53039 * 109.31366 * 305.36993 * 15 14 5 17 17 H 1.09001 * 109.44602 * 301.34870 * 16 15 14 18 18 N 1.46503 * 109.46367 * 181.38710 * 16 15 14 19 19 C 1.34773 * 120.00336 * 84.92432 * 18 16 15 20 20 O 1.21289 * 119.99643 * 0.28129 * 19 18 16 21 21 C 1.50696 * 119.99934 * 180.02562 * 19 18 16 22 22 H 1.08994 * 109.71788 * 59.39955 * 21 19 18 23 23 C 1.53376 * 109.71296 * 180.02562 * 21 19 18 24 24 C 1.53027 * 109.75043 * 170.35155 * 23 21 19 25 25 C 1.53387 * 109.72816 * 288.29425 * 24 23 21 26 26 C 1.50878 * 108.19666 * 50.53856 * 25 24 23 27 27 C 1.34572 * 128.32479 * 163.35861 * 26 25 24 28 28 N 1.35202 * 107.61939 * 180.14931 * 27 26 25 29 29 H 0.96992 * 126.00786 * 179.97438 * 28 27 26 30 30 N 1.40321 * 107.98890 * 359.93371 * 28 27 26 31 31 C 1.30126 * 108.12483 * 359.97438 * 30 28 27 32 32 H 1.09004 * 109.47065 * 299.92584 * 1 2 3 33 33 H 1.09003 * 109.46503 * 59.91362 * 1 2 3 34 34 H 1.08991 * 109.47630 * 179.91813 * 1 2 3 35 35 H 1.09007 * 109.46952 * 180.08107 * 3 2 1 36 36 H 1.09003 * 109.47414 * 300.07778 * 3 2 1 37 37 H 1.09008 * 109.47229 * 60.08414 * 3 2 1 38 38 H 1.08999 * 109.58928 * 54.47371 * 4 2 1 39 39 H 1.08999 * 109.58588 * 174.75899 * 4 2 1 40 40 H 0.97005 * 119.99710 * 180.02562 * 9 8 6 41 41 H 1.09002 * 109.58750 * 173.39431 * 14 5 4 42 42 H 1.09003 * 109.58182 * 293.81903 * 14 5 4 43 43 H 1.09000 * 109.50068 * 185.41636 * 15 14 5 44 44 H 1.08999 * 109.50011 * 65.31868 * 15 14 5 45 45 H 0.97001 * 119.99500 * 264.93119 * 18 16 15 46 46 H 1.08998 * 109.42115 * 290.42908 * 23 21 19 47 47 H 1.08997 * 109.42705 * 50.32110 * 23 21 19 48 48 H 1.09004 * 109.43039 * 48.37105 * 24 23 21 49 49 H 1.08999 * 109.43208 * 168.20880 * 24 23 21 50 50 H 1.08998 * 109.71814 * 170.22053 * 25 24 23 51 51 H 1.09000 * 109.71019 * 290.86864 * 25 24 23 52 52 H 1.07995 * 126.19581 * 0.08809 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 1.6515 -2.1382 -1.1696 6 6 0.9631 -2.7312 -2.1941 7 1 0.3289 -2.1359 -2.8342 8 6 1.0803 -4.0974 -2.4098 9 7 0.1543 -4.7379 -3.0914 10 14 2.5523 -5.0269 -1.7326 11 1 2.2160 -5.5812 -0.3966 12 1 2.9039 -6.1366 -2.6547 13 1 3.7074 -4.1020 -1.6082 14 6 2.0139 -2.9041 0.0308 15 6 1.5029 -2.1558 1.2660 16 6 2.0407 -0.7232 1.2484 17 1 3.1304 -0.7447 1.2352 18 7 1.5811 -0.0144 2.4453 19 6 2.2696 -0.1228 3.5988 20 8 3.2728 -0.8031 3.6446 21 6 1.7964 0.6058 4.8301 22 1 0.7892 0.2781 5.0870 23 6 2.7479 0.3193 5.9985 24 6 2.4131 1.2383 7.1754 25 6 2.8410 2.6746 6.8488 26 6 2.2784 3.0380 5.4968 27 6 2.1375 4.2608 4.9528 28 7 1.5857 4.1029 3.7286 29 1 1.3682 4.8135 3.1053 30 7 1.3839 2.7304 3.5179 31 6 1.7991 2.0934 4.5739 32 1 -0.3633 0.5127 0.8907 33 1 -0.3632 0.5152 -0.8893 34 1 -0.3634 -1.0275 -0.0015 35 1 3.1314 1.4409 -0.0015 36 1 1.6774 1.9566 -0.8893 37 1 1.6797 1.9557 0.8908 38 1 1.6008 -0.2731 -2.1389 39 1 3.1273 -0.6442 -1.2993 40 1 0.2361 -5.6927 -3.2417 41 1 1.5552 -3.8919 -0.0137 42 1 3.0978 -3.0044 0.0867 43 1 1.8479 -2.6629 2.1671 44 1 0.4132 -2.1354 1.2541 45 1 0.7810 0.5328 2.4077 46 1 2.6392 -0.7201 6.3080 47 1 3.7754 0.4976 5.6813 48 1 1.3392 1.2133 7.3609 49 1 2.9419 0.8958 8.0648 50 1 2.4503 3.3556 7.6049 51 1 3.9289 2.7373 6.8233 52 1 2.4141 5.1986 5.4114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940747925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:56 Heat of formation + Delta-G solvation = 49.554154 kcal Electronic energy + Delta-G solvation = -32488.755187 eV Core-core repulsion = 28489.775898 eV Total energy + Delta-G solvation = -3998.979289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.84977 -40.02716 -38.42500 -36.40727 -34.72732 -33.22686 -32.51556 -31.62450 -30.72617 -30.09708 -28.91457 -26.86827 -26.31830 -25.52607 -24.34486 -22.39321 -22.01472 -21.49943 -21.09997 -20.16967 -19.09048 -18.25680 -17.85190 -16.96165 -16.60654 -15.94675 -15.76794 -15.15303 -14.75100 -14.48339 -14.43219 -14.28352 -14.16548 -13.83077 -13.63102 -13.42917 -13.29995 -12.91569 -12.73089 -12.65284 -12.32322 -12.22085 -11.97899 -11.73004 -11.66099 -11.56625 -11.22617 -11.15511 -11.12115 -10.99283 -10.76210 -10.69058 -10.44563 -10.30936 -10.09544 -9.94088 -9.86217 -9.67872 -9.43723 -9.36512 -8.70580 -8.64440 -8.50741 -6.91664 -5.90452 -3.25627 1.60819 2.34241 2.51013 2.89530 3.39085 3.42302 3.54482 3.58993 4.14566 4.34325 4.58748 4.63455 4.69735 4.81621 4.97773 5.01185 5.05700 5.16101 5.18725 5.24641 5.31302 5.36271 5.43741 5.48221 5.50836 5.69009 5.78952 5.81774 5.82224 5.85267 5.93670 5.96651 6.02921 6.11230 6.16665 6.20309 6.27933 6.32837 6.35511 6.40642 6.48835 6.59761 6.68299 6.71160 6.76151 6.83302 6.90868 6.99729 7.08051 7.36279 7.79223 8.00900 8.37163 8.45147 8.98820 9.77305 10.15411 11.25471 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.003081 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.618274 B = 9085.155616 C =10036.747091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.138 4.138 4 C 0.162 3.838 5 N -0.603 5.603 6 C -0.256 4.256 7 H 0.085 0.915 8 C 0.023 3.977 9 N -0.910 5.910 10 Si 0.881 3.119 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.270 1.270 14 C 0.129 3.871 15 C -0.144 4.144 16 C 0.164 3.836 17 H 0.079 0.921 18 N -0.709 5.709 19 C 0.520 3.480 20 O -0.540 6.540 21 C -0.027 4.027 22 H 0.112 0.888 23 C -0.097 4.097 24 C -0.118 4.118 25 C -0.042 4.042 26 C -0.230 4.230 27 C 0.060 3.940 28 N -0.480 5.480 29 H 0.440 0.560 30 N -0.274 5.274 31 C 0.087 3.913 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.023 0.977 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.401 0.599 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.070 0.930 52 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 20.169 20.870 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.196 4.196 4 C 0.036 3.964 5 N -0.326 5.326 6 C -0.384 4.384 7 H 0.103 0.897 8 C -0.175 4.175 9 N -0.553 5.553 10 Si 0.711 3.289 11 H -0.216 1.216 12 H -0.233 1.233 13 H -0.195 1.195 14 C 0.003 3.997 15 C -0.184 4.184 16 C 0.060 3.940 17 H 0.097 0.903 18 N -0.359 5.359 19 C 0.304 3.696 20 O -0.418 6.418 21 C -0.051 4.051 22 H 0.130 0.870 23 C -0.135 4.135 24 C -0.155 4.155 25 C -0.080 4.080 26 C -0.241 4.241 27 C -0.086 4.086 28 N -0.188 5.188 29 H 0.284 0.716 30 N -0.096 5.096 31 C -0.082 4.082 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.237 0.763 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.088 0.912 51 H 0.088 0.912 52 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.531 19.426 19.625 27.730 hybrid contribution 0.596 0.260 0.708 0.961 sum 3.127 19.687 20.333 28.474 Atomic orbital electron populations 1.21783 0.94114 1.03123 0.99804 1.21298 0.96713 0.94790 0.96113 1.21820 1.00446 0.95775 1.01568 1.20943 0.96290 0.84815 0.94391 1.44354 1.65736 1.06624 1.15890 1.18890 1.19421 0.92072 1.08016 0.89692 1.25256 0.97796 0.96675 0.97803 1.69837 1.32702 1.08768 1.43970 0.86983 0.85588 0.79278 0.77002 1.21628 1.23284 1.19524 1.21306 0.97100 0.95657 0.85631 1.22458 1.01616 0.95133 0.99197 1.20924 0.99119 0.91247 0.82725 0.90268 1.46226 1.29873 1.49896 1.09934 1.20169 0.83770 0.81241 0.84411 1.90701 1.25280 1.41072 1.84702 1.19966 1.02530 0.87368 0.95188 0.87006 1.21400 0.99482 1.00130 0.92509 1.21590 1.01697 0.94347 0.97885 1.20020 0.99861 0.96522 0.91624 1.20067 1.12457 0.91489 1.00092 1.22047 0.99423 0.99681 0.87453 1.46308 1.51075 1.06598 1.14850 0.71580 1.76997 1.23555 0.87117 1.21981 1.21842 0.98740 0.95430 0.92198 0.94493 0.93006 0.90586 0.93435 0.92946 0.92120 0.91549 0.95930 0.92846 0.90784 0.95619 0.92431 0.91210 0.76251 0.90338 0.90353 0.91656 0.91029 0.91203 0.91157 0.80718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 7.83 37.16 0.29 -1.83 16 2 C -0.09 -1.44 0.56 -154.39 -0.09 -1.52 16 3 C -0.14 -1.97 8.31 37.15 0.31 -1.66 16 4 C 0.16 3.24 5.19 -3.71 -0.02 3.22 16 5 N -0.60 -14.34 2.21 -172.32 -0.38 -14.72 16 6 C -0.26 -7.11 10.03 -15.06 -0.15 -7.26 16 7 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 8 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 9 N -0.91 -28.07 13.97 55.49 0.78 -27.29 16 10 Si 0.88 23.01 24.34 -169.99 -4.14 18.87 16 11 H -0.29 -7.34 6.62 56.52 0.37 -6.97 16 12 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 13 H -0.27 -7.01 6.64 56.52 0.38 -6.63 16 14 C 0.13 2.94 4.20 -3.71 -0.02 2.93 16 15 C -0.14 -2.77 5.31 -26.61 -0.14 -2.91 16 16 C 0.16 2.83 1.57 -67.89 -0.11 2.72 16 17 H 0.08 1.54 7.57 -51.93 -0.39 1.15 16 18 N -0.71 -10.41 3.97 -53.76 -0.21 -10.62 16 19 C 0.52 7.77 7.09 -10.99 -0.08 7.69 16 20 O -0.54 -9.97 15.51 5.55 0.09 -9.88 16 21 C -0.03 -0.31 2.90 -92.61 -0.27 -0.57 16 22 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 23 C -0.10 -0.96 4.61 -26.52 -0.12 -1.08 16 24 C -0.12 -0.83 5.87 -26.52 -0.16 -0.99 16 25 C -0.04 -0.29 6.28 -27.60 -0.17 -0.46 16 26 C -0.23 -2.05 5.89 -104.98 -0.62 -2.67 16 27 C 0.06 0.42 11.95 -17.36 -0.21 0.21 16 28 N -0.48 -3.83 7.37 30.35 0.22 -3.61 16 29 H 0.44 2.23 8.96 -182.44 -1.64 0.59 16 30 N -0.27 -3.08 11.56 33.75 0.39 -2.69 16 31 C 0.09 0.96 6.39 -82.35 -0.53 0.43 16 32 H 0.04 0.51 6.58 -51.93 -0.34 0.17 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.45 5.97 -51.93 -0.31 1.14 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.82 7.36 -51.92 -0.38 0.44 16 38 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.07 1.84 4.49 -51.93 -0.23 1.60 16 42 H 0.03 0.60 7.08 -51.93 -0.37 0.23 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.34 6.34 -51.93 -0.33 1.01 16 45 H 0.40 5.39 5.86 -40.82 -0.24 5.15 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16 48 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -34.12 388.35 -9.29 -43.41 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -9.73 Total: 3.83 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.16 Total: -3.15 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.80 Total: -58.94 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.14 Total: 18.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.12 -9.29 -43.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940747925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.966 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds