Wall clock time and date at job start Wed Apr 1 2020 04:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.52143 * 2 1 4 4 C 1.53193 * 109.49993 * 239.91722 * 2 1 3 5 5 N 1.46917 * 108.77707 * 185.41395 * 4 2 1 6 6 C 1.36934 * 120.63197 * 233.58855 * 5 4 2 7 7 H 1.08005 * 120.00026 * 151.84478 * 6 5 4 8 8 C 1.38809 * 120.00014 * 331.84329 * 6 5 4 9 9 N 1.31617 * 119.99701 * 343.07445 * 8 6 5 10 10 Si 1.86803 * 119.99989 * 163.07548 * 8 6 5 11 11 H 1.48501 * 109.47186 * 60.00306 * 10 8 6 12 12 H 1.48502 * 109.46757 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47057 * 299.99919 * 10 8 6 14 14 C 1.46931 * 118.73799 * 53.60818 * 5 4 2 15 15 C 1.53201 * 108.77571 * 306.39197 * 14 5 4 16 16 C 1.53032 * 109.30868 * 54.63464 * 15 14 5 17 17 H 1.08997 * 109.46609 * 58.64653 * 16 15 14 18 18 N 1.46506 * 109.45991 * 178.61219 * 16 15 14 19 19 C 1.34772 * 120.00323 * 275.00655 * 18 16 15 20 20 O 1.21283 * 119.99734 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00088 * 180.27169 * 19 18 16 22 22 H 1.08994 * 109.71433 * 299.71998 * 21 19 18 23 23 C 1.53374 * 109.71285 * 179.11703 * 21 19 18 24 24 C 1.53026 * 109.75131 * 189.65929 * 23 21 19 25 25 C 1.53385 * 109.72838 * 71.70556 * 24 23 21 26 26 C 1.50883 * 108.19112 * 309.44316 * 25 24 23 27 27 C 1.34569 * 128.32928 * 196.67908 * 26 25 24 28 28 N 1.35195 * 107.61901 * 179.85903 * 27 26 25 29 29 H 0.97003 * 126.00483 * 180.02562 * 28 27 26 30 30 N 1.40309 * 107.99514 * 0.03512 * 28 27 26 31 31 C 1.30070 * 108.14024 * 0.02562 * 30 28 27 32 32 H 1.08997 * 109.47206 * 299.92031 * 1 2 3 33 33 H 1.09007 * 109.46868 * 59.92031 * 1 2 3 34 34 H 1.08996 * 109.47120 * 179.91783 * 1 2 3 35 35 H 1.09001 * 109.47162 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47310 * 300.07648 * 3 2 1 37 37 H 1.09000 * 109.47250 * 60.07821 * 3 2 1 38 38 H 1.09005 * 109.58303 * 65.62851 * 4 2 1 39 39 H 1.09000 * 109.70213 * 305.27622 * 4 2 1 40 40 H 0.97003 * 119.99606 * 180.02562 * 9 8 6 41 41 H 1.09005 * 109.58540 * 186.60477 * 14 5 4 42 42 H 1.08997 * 109.58913 * 66.18010 * 14 5 4 43 43 H 1.08996 * 109.49678 * 294.68259 * 15 14 5 44 44 H 1.08993 * 109.49436 * 174.58497 * 15 14 5 45 45 H 0.97001 * 119.99913 * 94.99203 * 18 16 15 46 46 H 1.09001 * 109.42767 * 309.74142 * 23 21 19 47 47 H 1.08994 * 109.42393 * 69.63477 * 23 21 19 48 48 H 1.09005 * 109.42886 * 191.78627 * 24 23 21 49 49 H 1.09005 * 109.42691 * 311.62454 * 24 23 21 50 50 H 1.08996 * 109.72123 * 69.11800 * 25 24 23 51 51 H 1.08999 * 109.71729 * 189.72833 * 25 24 23 52 52 H 1.08001 * 126.19302 * 359.89433 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3793 -2.1943 7 1 5.2962 -0.0326 -1.9918 8 6 3.8048 -0.3690 -3.4935 9 7 2.7415 -1.0806 -3.8022 10 14 4.6561 0.6549 -4.8036 11 1 6.0614 0.1988 -4.9527 12 1 3.9443 0.4947 -6.0970 13 1 4.6396 2.0846 -4.4027 14 6 4.1053 -1.4267 0.0309 15 6 3.5708 -0.6949 1.2662 16 6 2.0408 -0.7231 1.2484 17 1 1.6967 -1.7572 1.2352 18 7 1.5264 -0.0529 2.4453 19 6 1.3971 -0.7385 3.5984 20 8 1.7061 -1.9103 3.6451 21 6 0.8622 -0.0507 4.8280 22 1 1.5126 0.7818 5.0959 23 6 0.7937 -1.0488 5.9906 24 6 0.0329 -0.4257 7.1630 25 6 -1.4597 -0.3344 6.8216 26 6 -1.5946 0.3261 5.4718 27 6 -2.6894 0.8806 4.9197 28 7 -2.3397 1.3512 3.7015 29 1 -2.9264 1.8025 3.0746 30 7 -0.9791 1.0719 3.5031 31 6 -0.5333 0.4585 4.5599 32 1 -0.3633 0.5126 0.8907 33 1 -0.3633 0.5151 -0.8893 34 1 -0.3633 -1.0276 -0.0015 35 1 3.1313 1.4411 -0.0005 36 1 1.6773 1.9566 -0.8893 37 1 1.6796 1.9558 0.8907 38 1 1.7639 -0.1579 -2.1389 39 1 1.6054 -1.7215 -1.3005 40 1 2.4002 -1.0737 -4.7101 41 1 5.1896 -1.3246 -0.0136 42 1 3.8376 -2.4818 0.0869 43 1 3.9159 0.3389 1.2542 44 1 3.9333 -1.1896 2.1672 45 1 1.2791 0.8843 2.4080 46 1 0.2786 -1.9519 5.6632 47 1 1.8044 -1.3033 6.3097 48 1 0.1647 -1.0445 8.0506 49 1 0.4222 0.5737 7.3577 50 1 -1.8908 -1.3348 6.7863 51 1 -1.9737 0.2611 7.5761 52 1 -3.6699 0.9396 5.3687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940747928.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:07 Heat of formation + Delta-G solvation = 43.787982 kcal Electronic energy + Delta-G solvation = -32465.786237 eV Core-core repulsion = 28466.556909 eV Total energy + Delta-G solvation = -3999.229329 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.77851 -39.85497 -38.19175 -36.32340 -34.47166 -32.98138 -32.37012 -31.77696 -30.65570 -29.44218 -28.75301 -26.64232 -25.85452 -25.44621 -24.38203 -22.47924 -21.95404 -21.36876 -20.50428 -20.06586 -19.00744 -18.05389 -17.76309 -17.05211 -16.37278 -15.77819 -15.58191 -14.88532 -14.78276 -14.45420 -14.35989 -14.04891 -13.81399 -13.59121 -13.46319 -13.18942 -13.14705 -12.88375 -12.80495 -12.45980 -12.25703 -12.08375 -11.65650 -11.50208 -11.41019 -11.20629 -11.07722 -10.98082 -10.92921 -10.80297 -10.64784 -10.61225 -10.50353 -10.12180 -10.03713 -9.92171 -9.83717 -9.59810 -9.46563 -9.20370 -8.63589 -8.50842 -8.37057 -6.60754 -5.74414 -3.16173 1.68504 2.41483 2.58625 2.99302 3.40469 3.46311 3.47464 3.55000 4.21481 4.41008 4.53149 4.69253 4.76130 4.88640 5.07002 5.21487 5.21884 5.30497 5.34579 5.37361 5.48970 5.50117 5.56565 5.66822 5.71006 5.74341 5.84465 5.90406 5.98084 6.01475 6.07006 6.21450 6.22394 6.25711 6.34596 6.38629 6.43148 6.53074 6.58474 6.59898 6.77223 6.84303 6.91078 7.03876 7.07199 7.10360 7.14389 7.40273 7.44111 7.69159 7.83107 7.93256 8.49863 8.56360 9.26038 9.89589 10.47229 11.34156 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021128 B = 0.002895 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.934528 B = 9668.506072 C =10478.575186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 C -0.125 4.125 4 C 0.187 3.813 5 N -0.589 5.589 6 C -0.249 4.249 7 H 0.064 0.936 8 C 0.003 3.997 9 N -0.903 5.903 10 Si 0.900 3.100 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.148 3.852 15 C -0.142 4.142 16 C 0.164 3.836 17 H 0.078 0.922 18 N -0.708 5.708 19 C 0.518 3.482 20 O -0.542 6.542 21 C -0.027 4.027 22 H 0.111 0.889 23 C -0.096 4.096 24 C -0.117 4.117 25 C -0.042 4.042 26 C -0.230 4.230 27 C 0.059 3.941 28 N -0.480 5.480 29 H 0.440 0.560 30 N -0.272 5.272 31 C 0.086 3.914 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.030 0.970 38 H 0.091 0.909 39 H 0.018 0.982 40 H 0.253 0.747 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.400 0.600 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.070 0.930 51 H 0.069 0.931 52 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.672 6.082 21.776 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 C -0.183 4.183 4 C 0.061 3.939 5 N -0.311 5.311 6 C -0.379 4.379 7 H 0.082 0.918 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.730 3.270 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.211 1.211 14 C 0.021 3.979 15 C -0.183 4.183 16 C 0.060 3.940 17 H 0.096 0.904 18 N -0.358 5.358 19 C 0.303 3.697 20 O -0.420 6.420 21 C -0.051 4.051 22 H 0.129 0.871 23 C -0.135 4.135 24 C -0.155 4.155 25 C -0.080 4.080 26 C -0.242 4.242 27 C -0.086 4.086 28 N -0.188 5.188 29 H 0.284 0.716 30 N -0.094 5.094 31 C -0.083 4.083 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.109 0.891 39 H 0.036 0.964 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.236 0.764 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.087 0.913 52 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -11.231 5.672 20.455 24.015 hybrid contribution -0.480 0.989 -0.411 1.174 sum -11.711 6.661 20.044 24.152 Atomic orbital electron populations 1.21777 0.95446 1.01054 1.01042 1.21508 0.94493 0.96653 0.96959 1.21724 1.02379 0.94830 0.99330 1.20807 0.83037 0.96671 0.93419 1.44037 1.01664 1.69250 1.16187 1.19115 0.97903 1.35126 0.85714 0.91802 1.25022 0.98537 0.99050 0.96946 1.70021 1.25687 1.40251 1.18753 0.86407 0.78972 0.80531 0.81090 1.20949 1.21731 1.21093 1.20874 0.96543 0.94267 0.86245 1.22444 0.94979 1.01480 0.99359 1.20966 0.93606 0.96682 0.82716 0.90435 1.46292 1.64734 1.14777 1.10029 1.20154 0.78106 0.87044 0.84432 1.90692 1.50650 1.15933 1.84678 1.19967 0.90396 0.99407 0.95297 0.87131 1.21392 1.01803 0.97670 0.92606 1.21590 0.94692 1.01338 0.97878 1.20012 0.96808 0.99532 0.91635 1.20077 0.92648 1.11260 1.00217 1.22040 0.99925 0.99133 0.87551 1.46315 1.08640 1.48677 1.15180 0.71565 1.76991 0.90464 1.20156 1.21838 1.21853 0.96011 0.98215 0.92223 0.92664 0.93096 0.93608 0.91242 0.93147 0.95086 0.89090 0.96434 0.93654 0.92661 0.96325 0.91910 0.92805 0.76364 0.90355 0.90383 0.91076 0.91704 0.91174 0.91257 0.80750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.31 37.16 0.31 -2.03 16 2 C -0.09 -1.79 0.56 -154.39 -0.09 -1.87 16 3 C -0.13 -2.27 7.83 37.16 0.29 -1.98 16 4 C 0.19 4.47 3.98 -3.72 -0.01 4.45 16 5 N -0.59 -14.74 2.43 -172.31 -0.42 -15.16 16 6 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 7 H 0.06 1.72 7.89 -52.48 -0.41 1.30 16 8 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 9 N -0.90 -26.24 11.20 55.49 0.62 -25.62 16 10 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.15 3.24 6.52 -3.70 -0.02 3.22 16 15 C -0.14 -2.70 5.31 -26.61 -0.14 -2.84 16 16 C 0.16 3.04 1.57 -67.89 -0.11 2.93 16 17 H 0.08 1.64 7.57 -51.93 -0.39 1.25 16 18 N -0.71 -11.12 3.96 -53.77 -0.21 -11.33 16 19 C 0.52 8.12 7.10 -10.99 -0.08 8.04 16 20 O -0.54 -10.33 15.51 5.55 0.09 -10.24 16 21 C -0.03 -0.32 2.90 -92.61 -0.27 -0.59 16 22 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 23 C -0.10 -0.99 4.61 -26.52 -0.12 -1.11 16 24 C -0.12 -0.87 5.87 -26.52 -0.16 -1.03 16 25 C -0.04 -0.31 6.28 -27.59 -0.17 -0.48 16 26 C -0.23 -2.21 5.89 -104.96 -0.62 -2.83 16 27 C 0.06 0.46 11.95 -17.37 -0.21 0.25 16 28 N -0.48 -4.29 7.37 30.35 0.22 -4.07 16 29 H 0.44 2.69 8.96 -182.44 -1.64 1.05 16 30 N -0.27 -3.34 11.46 33.75 0.39 -2.95 16 31 C 0.09 1.02 6.39 -82.35 -0.53 0.49 16 32 H 0.05 0.87 7.33 -51.93 -0.38 0.49 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.38 5.97 -51.93 -0.31 1.07 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.03 0.48 6.58 -51.93 -0.34 0.13 16 38 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.17 6.33 -51.93 -0.33 0.84 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.40 5.85 5.80 -40.82 -0.24 5.61 16 46 H 0.08 0.95 7.76 -51.93 -0.40 0.54 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -32.81 394.62 -10.35 -43.16 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -9.80 Total: 5.86 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.15 Total: -2.32 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.60 Total: -59.13 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.81 -10.35 -43.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940747928.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.948 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds