Wall clock time and date at job start Wed Apr 1 2020 04:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.52143 * 2 1 4 4 C 1.53193 * 109.49993 * 239.91722 * 2 1 3 5 5 N 1.46917 * 108.77707 * 185.41395 * 4 2 1 6 6 C 1.36934 * 120.63197 * 233.58855 * 5 4 2 7 7 H 1.08005 * 120.00026 * 151.84478 * 6 5 4 8 8 C 1.38809 * 120.00014 * 331.84329 * 6 5 4 9 9 N 1.31617 * 119.99701 * 343.07445 * 8 6 5 10 10 Si 1.86803 * 119.99989 * 163.07548 * 8 6 5 11 11 H 1.48501 * 109.47186 * 60.00306 * 10 8 6 12 12 H 1.48502 * 109.46757 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47057 * 299.99919 * 10 8 6 14 14 C 1.46931 * 118.73799 * 53.60818 * 5 4 2 15 15 C 1.53201 * 108.77571 * 306.39197 * 14 5 4 16 16 C 1.53032 * 109.30868 * 54.63464 * 15 14 5 17 17 H 1.08997 * 109.46609 * 58.64653 * 16 15 14 18 18 N 1.46506 * 109.45991 * 178.61219 * 16 15 14 19 19 C 1.34772 * 120.00323 * 275.00655 * 18 16 15 20 20 O 1.21283 * 119.99734 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00088 * 180.27169 * 19 18 16 22 22 H 1.08994 * 109.71433 * 299.71998 * 21 19 18 23 23 C 1.53374 * 109.71285 * 179.11703 * 21 19 18 24 24 C 1.53026 * 109.75131 * 189.65929 * 23 21 19 25 25 C 1.53385 * 109.72838 * 71.70556 * 24 23 21 26 26 C 1.50883 * 108.19112 * 309.44316 * 25 24 23 27 27 C 1.34569 * 128.32928 * 196.67908 * 26 25 24 28 28 N 1.35195 * 107.61901 * 179.85903 * 27 26 25 29 29 H 0.97003 * 126.00483 * 180.02562 * 28 27 26 30 30 N 1.40309 * 107.99514 * 0.03512 * 28 27 26 31 31 C 1.30070 * 108.14024 * 0.02562 * 30 28 27 32 32 H 1.08997 * 109.47206 * 299.92031 * 1 2 3 33 33 H 1.09007 * 109.46868 * 59.92031 * 1 2 3 34 34 H 1.08996 * 109.47120 * 179.91783 * 1 2 3 35 35 H 1.09001 * 109.47162 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47310 * 300.07648 * 3 2 1 37 37 H 1.09000 * 109.47250 * 60.07821 * 3 2 1 38 38 H 1.09005 * 109.58303 * 65.62851 * 4 2 1 39 39 H 1.09000 * 109.70213 * 305.27622 * 4 2 1 40 40 H 0.97003 * 119.99606 * 180.02562 * 9 8 6 41 41 H 1.09005 * 109.58540 * 186.60477 * 14 5 4 42 42 H 1.08997 * 109.58913 * 66.18010 * 14 5 4 43 43 H 1.08996 * 109.49678 * 294.68259 * 15 14 5 44 44 H 1.08993 * 109.49436 * 174.58497 * 15 14 5 45 45 H 0.97001 * 119.99913 * 94.99203 * 18 16 15 46 46 H 1.09001 * 109.42767 * 309.74142 * 23 21 19 47 47 H 1.08994 * 109.42393 * 69.63477 * 23 21 19 48 48 H 1.09005 * 109.42886 * 191.78627 * 24 23 21 49 49 H 1.09005 * 109.42691 * 311.62454 * 24 23 21 50 50 H 1.08996 * 109.72123 * 69.11800 * 25 24 23 51 51 H 1.08999 * 109.71729 * 189.72833 * 25 24 23 52 52 H 1.08001 * 126.19302 * 359.89433 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3793 -2.1943 7 1 5.2962 -0.0326 -1.9918 8 6 3.8048 -0.3690 -3.4935 9 7 2.7415 -1.0806 -3.8022 10 14 4.6561 0.6549 -4.8036 11 1 6.0614 0.1988 -4.9527 12 1 3.9443 0.4947 -6.0970 13 1 4.6396 2.0846 -4.4027 14 6 4.1053 -1.4267 0.0309 15 6 3.5708 -0.6949 1.2662 16 6 2.0408 -0.7231 1.2484 17 1 1.6967 -1.7572 1.2352 18 7 1.5264 -0.0529 2.4453 19 6 1.3971 -0.7385 3.5984 20 8 1.7061 -1.9103 3.6451 21 6 0.8622 -0.0507 4.8280 22 1 1.5126 0.7818 5.0959 23 6 0.7937 -1.0488 5.9906 24 6 0.0329 -0.4257 7.1630 25 6 -1.4597 -0.3344 6.8216 26 6 -1.5946 0.3261 5.4718 27 6 -2.6894 0.8806 4.9197 28 7 -2.3397 1.3512 3.7015 29 1 -2.9264 1.8025 3.0746 30 7 -0.9791 1.0719 3.5031 31 6 -0.5333 0.4585 4.5599 32 1 -0.3633 0.5126 0.8907 33 1 -0.3633 0.5151 -0.8893 34 1 -0.3633 -1.0276 -0.0015 35 1 3.1313 1.4411 -0.0005 36 1 1.6773 1.9566 -0.8893 37 1 1.6796 1.9558 0.8907 38 1 1.7639 -0.1579 -2.1389 39 1 1.6054 -1.7215 -1.3005 40 1 2.4002 -1.0737 -4.7101 41 1 5.1896 -1.3246 -0.0136 42 1 3.8376 -2.4818 0.0869 43 1 3.9159 0.3389 1.2542 44 1 3.9333 -1.1896 2.1672 45 1 1.2791 0.8843 2.4080 46 1 0.2786 -1.9519 5.6632 47 1 1.8044 -1.3033 6.3097 48 1 0.1647 -1.0445 8.0506 49 1 0.4222 0.5737 7.3577 50 1 -1.8908 -1.3348 6.7863 51 1 -1.9737 0.2611 7.5761 52 1 -3.6699 0.9396 5.3687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940747928.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:06 Heat of formation + Delta-G solvation = 23.685965 kcal Electronic energy + Delta-G solvation = -32466.657926 eV Core-core repulsion = 28466.556909 eV Total energy + Delta-G solvation = -4000.101017 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.52405 -41.24079 -39.66770 -37.15918 -36.22515 -34.35629 -33.89070 -33.14842 -31.38560 -31.10237 -29.61492 -28.17355 -27.62584 -26.97120 -25.52857 -24.01652 -22.67898 -22.38653 -22.28237 -21.20508 -19.92015 -19.52441 -18.83561 -18.44360 -17.78581 -17.07395 -16.76655 -16.59149 -15.86671 -15.65435 -15.53537 -15.26507 -15.18715 -15.06305 -14.92125 -14.58358 -14.31831 -14.24205 -13.87173 -13.59567 -13.51482 -13.24727 -13.06256 -12.91201 -12.88593 -12.73892 -12.60932 -12.45867 -12.35606 -12.30462 -11.95570 -11.84001 -11.75820 -11.66607 -11.59146 -11.41968 -11.31915 -11.16365 -10.82038 -10.52914 -10.28667 -9.90442 -9.28394 -8.68005 -7.86136 -5.31702 0.99807 1.47502 1.49252 1.53331 1.56215 1.81275 2.06061 2.31296 2.51842 3.28838 3.45516 3.61611 3.65138 3.72721 3.91370 3.97985 4.06262 4.10299 4.19505 4.33683 4.42994 4.43529 4.46868 4.53845 4.60156 4.66264 4.67408 4.80562 4.83370 4.86966 4.93086 4.94955 4.98188 5.01475 5.08259 5.11482 5.21819 5.23983 5.30297 5.32363 5.33182 5.37807 5.39651 5.53501 5.59187 5.62327 5.68465 5.70978 5.72379 6.39465 6.51982 6.63166 6.73398 7.15087 7.30431 7.84710 8.38975 9.20605 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021128 B = 0.002895 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.934528 B = 9668.506072 C =10478.575186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.084 4.084 3 C -0.116 4.116 4 C 0.199 3.801 5 N -0.602 5.602 6 C -0.258 4.258 7 H 0.068 0.932 8 C -0.048 4.048 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.277 1.277 12 H -0.296 1.296 13 H -0.276 1.276 14 C 0.145 3.855 15 C -0.127 4.127 16 C 0.176 3.824 17 H 0.046 0.954 18 N -0.698 5.698 19 C 0.516 3.484 20 O -0.581 6.581 21 C -0.020 4.020 22 H 0.131 0.869 23 C -0.094 4.094 24 C -0.111 4.111 25 C -0.039 4.039 26 C -0.250 4.250 27 C 0.073 3.927 28 N -0.475 5.475 29 H 0.451 0.549 30 N -0.310 5.310 31 C 0.067 3.933 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.032 0.968 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.062 0.938 39 H -0.018 1.018 40 H 0.249 0.751 41 H 0.060 0.940 42 H 0.003 0.997 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.409 0.591 46 H 0.053 0.947 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.093 0.907 52 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 8.415 24.238 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.173 4.173 4 C 0.072 3.928 5 N -0.325 5.325 6 C -0.388 4.388 7 H 0.085 0.915 8 C -0.244 4.244 9 N -0.582 5.582 10 Si 0.794 3.206 11 H -0.203 1.203 12 H -0.222 1.222 13 H -0.201 1.201 14 C 0.019 3.981 15 C -0.167 4.167 16 C 0.070 3.930 17 H 0.064 0.936 18 N -0.349 5.349 19 C 0.302 3.698 20 O -0.461 6.461 21 C -0.043 4.043 22 H 0.149 0.851 23 C -0.132 4.132 24 C -0.148 4.148 25 C -0.078 4.078 26 C -0.261 4.261 27 C -0.073 4.073 28 N -0.185 5.185 29 H 0.297 0.703 30 N -0.133 5.133 31 C -0.101 4.101 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.000 1.000 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.021 0.979 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.247 0.753 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.106 0.894 49 H 0.092 0.908 50 H 0.087 0.913 51 H 0.111 0.889 52 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.227 8.034 22.948 27.215 hybrid contribution -0.207 0.185 -1.165 1.198 sum -12.434 8.218 21.783 26.394 Atomic orbital electron populations 1.21688 0.93910 1.00609 1.02121 1.21289 0.95613 0.96905 0.94803 1.21618 1.01283 0.93810 1.00612 1.20556 0.82690 0.94825 0.94712 1.44251 1.01996 1.69597 1.16637 1.19444 0.98286 1.34635 0.86439 0.91453 1.25778 0.99427 1.00201 0.98948 1.70192 1.27322 1.41838 1.18832 0.85367 0.77937 0.79196 0.78106 1.20292 1.22229 1.20146 1.20963 0.96912 0.93677 0.86585 1.22249 0.95107 1.01545 0.97805 1.20568 0.93328 0.95233 0.83822 0.93567 1.46088 1.64605 1.14988 1.09219 1.20911 0.76983 0.86629 0.85245 1.90675 1.52196 1.17805 1.85381 1.19968 0.91128 0.99910 0.93335 0.85115 1.21389 1.02026 0.96591 0.93223 1.21574 0.94497 1.01828 0.96947 1.20067 0.96792 0.99693 0.91206 1.20429 0.92497 1.12129 1.01088 1.22689 1.01074 0.96978 0.86540 1.46381 1.07810 1.48356 1.15960 0.70277 1.76867 0.92320 1.21446 1.22691 1.21912 0.96257 0.98847 0.93105 0.90599 0.92834 0.94866 0.92768 0.93775 0.91828 0.91918 0.99990 0.94168 0.92117 0.97945 0.90832 0.92108 0.75290 0.92778 0.90458 0.89393 0.90791 0.91347 0.88864 0.76708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 8.31 71.98 0.60 -3.75 16 2 C -0.08 -3.24 0.56 -52.10 -0.03 -3.27 16 3 C -0.12 -4.09 7.83 71.98 0.56 -3.52 16 4 C 0.20 9.91 3.98 86.36 0.34 10.25 16 5 N -0.60 -31.06 2.43 -699.08 -1.70 -32.76 16 6 C -0.26 -14.31 9.58 84.03 0.81 -13.50 16 7 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 8 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 9 N -0.94 -56.25 11.20 21.65 0.24 -56.01 16 10 Si 0.97 45.23 29.59 68.60 2.03 47.26 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 14 C 0.14 6.54 6.52 86.36 0.56 7.10 16 15 C -0.13 -4.83 5.31 30.67 0.16 -4.66 16 16 C 0.18 6.59 1.57 45.01 0.07 6.66 16 17 H 0.05 2.05 7.57 -2.39 -0.02 2.03 16 18 N -0.70 -21.46 3.96 -442.41 -1.75 -23.21 16 19 C 0.52 15.99 7.10 87.66 0.62 16.61 16 20 O -0.58 -22.57 15.51 -3.04 -0.05 -22.62 16 21 C -0.02 -0.45 2.90 -12.08 -0.04 -0.49 16 22 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 23 C -0.09 -1.82 4.61 30.73 0.14 -1.68 16 24 C -0.11 -1.36 5.87 30.73 0.18 -1.18 16 25 C -0.04 -0.46 6.28 30.04 0.19 -0.27 16 26 C -0.25 -4.11 5.89 -20.08 -0.12 -4.22 16 27 C 0.07 0.88 11.95 83.33 1.00 1.88 16 28 N -0.48 -7.25 7.37 -57.89 -0.43 -7.68 16 29 H 0.45 4.34 8.96 -213.18 -1.91 2.43 16 30 N -0.31 -6.99 11.46 -47.12 -0.54 -7.53 16 31 C 0.07 1.45 6.39 43.46 0.28 1.73 16 32 H 0.08 2.32 7.33 -2.39 -0.02 2.30 16 33 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 2.09 5.97 -2.39 -0.01 2.07 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.81 6.58 -2.39 -0.02 1.80 16 38 H 0.06 3.49 6.06 -2.38 -0.01 3.47 16 39 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 40 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.06 2.63 7.93 -2.38 -0.02 2.61 16 42 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.07 2.66 6.33 -2.39 -0.02 2.65 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.41 11.24 5.80 -92.71 -0.54 10.70 16 46 H 0.05 1.31 7.76 -2.39 -0.02 1.29 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 49 H 0.07 0.80 8.10 -2.38 -0.02 0.78 16 50 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.22 0.64 8.06 -2.91 -0.02 0.61 16 Total: -1.00 -74.12 394.62 2.04 -72.07 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -1.51 Total: 25.09 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 5.75 Total: 5.39 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -4.18 Total: -127.19 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -74.12 2.04 -72.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940747928.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.759 kcal (2) G-P(sol) polarization free energy of solvation -74.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds