Wall clock time and date at job start Wed Apr 1 2020 04:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28446 * 125.19197 * 2 1 4 4 C 1.30856 * 110.93211 * 180.28374 * 3 2 1 5 5 C 1.50697 * 126.07351 * 179.75450 * 4 3 2 6 6 C 1.52999 * 117.50177 * 163.57837 * 5 4 3 7 7 C 1.52995 * 117.50184 * 94.95141 * 5 4 3 8 8 C 1.39674 * 107.86022 * 359.71519 * 4 3 2 9 9 C 1.36601 * 125.19394 * 179.79227 * 2 1 3 10 10 C 1.47165 * 126.87968 * 359.97438 * 9 2 1 11 11 O 1.21623 * 120.00404 * 355.47891 * 10 9 2 12 12 N 1.34780 * 119.99592 * 175.48024 * 10 9 2 13 13 C 1.46500 * 120.00137 * 185.34058 * 12 10 9 14 14 H 1.09008 * 109.44616 * 34.96518 * 13 12 10 15 15 C 1.53036 * 109.45802 * 275.00001 * 13 12 10 16 16 C 1.53195 * 109.33887 * 178.62784 * 15 13 12 17 17 N 1.46927 * 108.77396 * 54.61554 * 16 15 13 18 18 C 1.36939 * 120.62527 * 126.41931 * 17 16 15 19 19 H 1.07999 * 119.99918 * 321.68207 * 18 17 16 20 20 C 1.38814 * 120.00027 * 141.69161 * 18 17 16 21 21 N 1.31619 * 119.99541 * 350.28553 * 20 18 17 22 22 Si 1.86793 * 120.00122 * 170.28942 * 20 18 17 23 23 H 1.48501 * 109.47112 * 89.99417 * 22 20 18 24 24 H 1.48497 * 109.47402 * 209.99526 * 22 20 18 25 25 H 1.48507 * 109.47226 * 329.99865 * 22 20 18 26 26 C 1.46922 * 118.74243 * 306.39243 * 17 16 15 27 27 C 1.53038 * 109.48913 * 154.90978 * 13 12 10 28 28 C 1.53004 * 109.46694 * 61.40468 * 27 13 12 29 29 C 1.52998 * 109.52372 * 301.34019 * 27 13 12 30 30 H 1.08994 * 109.47121 * 269.88304 * 1 2 3 31 31 H 1.09001 * 109.47495 * 29.89404 * 1 2 3 32 32 H 1.09005 * 109.46822 * 149.88817 * 1 2 3 33 33 H 1.09003 * 115.54796 * 309.28690 * 5 4 3 34 34 H 1.08993 * 117.49853 * 359.97438 * 6 5 4 35 35 H 1.08997 * 117.49833 * 145.01654 * 6 5 4 36 36 H 1.08998 * 117.50241 * 214.98259 * 7 5 4 37 37 H 1.08997 * 117.49827 * 0.02562 * 7 5 4 38 38 H 1.08004 * 127.32137 * 179.97438 * 8 4 3 39 39 H 0.96997 * 120.00082 * 5.33541 * 12 10 9 40 40 H 1.09002 * 109.50162 * 58.66274 * 15 13 12 41 41 H 1.08994 * 109.49837 * 298.59467 * 15 13 12 42 42 H 1.09004 * 109.58811 * 174.40862 * 16 15 13 43 43 H 1.09001 * 109.58450 * 294.69088 * 16 15 13 44 44 H 0.97004 * 119.99354 * 180.02562 * 21 20 18 45 45 H 1.08994 * 109.58723 * 173.39495 * 26 17 16 46 46 H 1.09006 * 109.58841 * 293.68125 * 26 17 16 47 47 H 1.08998 * 109.46479 * 179.85350 * 28 27 13 48 48 H 1.09001 * 109.47002 * 299.85438 * 28 27 13 49 49 H 1.08993 * 109.47244 * 59.85474 * 28 27 13 50 50 H 1.08999 * 109.47323 * 300.10825 * 29 27 13 51 51 H 1.09002 * 109.47115 * 60.11386 * 29 27 13 52 52 H 1.09005 * 109.46834 * 180.11279 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7274 -0.0061 5 6 4.6335 1.6893 -0.0132 6 6 6.0102 1.1388 0.3641 7 6 5.2590 2.0519 1.3351 8 6 3.5612 -0.6666 -0.0038 9 6 2.2523 -1.1163 0.0040 10 6 1.7993 -2.5165 0.0096 11 8 0.6132 -2.7717 0.0941 12 7 2.6990 -3.5161 -0.0788 13 6 2.2434 -4.9039 -0.1912 14 1 1.3264 -4.9383 -0.7795 15 6 1.9741 -5.4668 1.2062 16 6 1.4652 -6.9066 1.0837 17 7 2.4313 -7.6841 0.2958 18 6 2.9506 -8.8530 0.7851 19 1 3.1953 -8.9380 1.8336 20 6 3.1627 -9.9285 -0.0665 21 7 2.6925 -9.8973 -1.2955 22 14 4.1151 -11.4198 0.5317 23 1 3.1745 -12.3998 1.1318 24 1 4.8209 -12.0485 -0.6137 25 1 5.1072 -10.9968 1.5526 26 6 2.8291 -7.1842 -1.0272 27 6 3.3227 -5.7413 -0.8811 28 6 4.5998 -5.7213 -0.0387 29 6 3.6148 -5.1588 -2.2654 30 1 -0.3633 -0.0021 1.0276 31 1 -0.3634 0.8909 -0.5122 32 1 -0.3633 -0.8890 -0.5156 33 1 4.5939 2.4678 -0.7752 34 1 6.0769 0.0809 0.6180 35 1 6.8767 1.5548 -0.1498 36 1 5.6313 3.0686 1.4601 37 1 4.8317 1.5943 2.2274 38 1 4.4595 -1.2662 -0.0077 39 1 3.6482 -3.3167 -0.0681 40 1 1.2217 -4.8563 1.7056 41 1 2.8963 -5.4551 1.7871 42 1 1.3665 -7.3450 2.0768 43 1 0.4962 -6.9104 0.5846 44 1 2.8404 -10.6490 -1.8905 45 1 3.6303 -7.8057 -1.4269 46 1 1.9731 -7.2132 -1.7014 47 1 5.3676 -6.3199 -0.5289 48 1 4.9505 -4.6945 0.0650 49 1 4.3909 -6.1353 0.9477 50 1 2.7044 -5.1722 -2.8647 51 1 3.9659 -4.1322 -2.1609 52 1 4.3821 -5.7571 -2.7568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940774063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:37 Heat of formation + Delta-G solvation = 83.191508 kcal Electronic energy + Delta-G solvation = -31632.591291 eV Core-core repulsion = 27635.070628 eV Total energy + Delta-G solvation = -3997.520663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.72447 -39.93433 -38.07645 -37.42565 -34.70188 -33.35327 -32.76508 -32.08078 -31.04278 -29.28819 -27.42190 -26.80774 -25.96064 -25.28922 -23.78351 -23.12449 -22.62704 -21.80455 -20.65482 -20.44173 -19.67059 -18.43184 -17.57924 -16.66175 -16.51851 -16.22437 -15.92738 -15.25571 -14.87705 -14.70696 -14.52665 -14.27333 -14.08352 -13.86187 -13.61226 -13.34951 -13.18453 -13.01657 -12.70857 -12.69407 -12.33542 -12.18623 -11.77832 -11.66108 -11.52989 -11.36804 -11.27766 -11.07832 -10.90714 -10.89515 -10.70708 -10.66015 -10.48711 -10.27702 -10.14870 -10.09092 -9.97235 -9.74928 -9.44743 -9.27480 -8.98954 -8.71843 -8.50135 -6.53304 -5.82672 -3.36457 1.16953 2.22417 2.29908 3.19866 3.25960 3.34512 3.41667 3.42897 3.56331 4.11423 4.45616 4.49143 4.60952 4.70322 4.75523 4.97124 5.03286 5.13293 5.15041 5.25679 5.27575 5.35252 5.38097 5.39588 5.51853 5.55279 5.56697 5.61681 5.82371 5.84504 5.87376 5.90818 6.05020 6.05796 6.17201 6.25575 6.28155 6.37472 6.40967 6.47319 6.55446 6.59165 6.67733 6.82193 6.87662 6.96220 7.01817 7.26253 7.49466 7.59673 7.79269 7.91023 8.19451 8.49379 9.20184 9.79062 10.42650 11.25499 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017781 B = 0.002592 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.336423 B =10799.195804 C =11591.244572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.257 5.257 3 N -0.274 5.274 4 C 0.053 3.947 5 C -0.073 4.073 6 C -0.166 4.166 7 C -0.168 4.168 8 C -0.185 4.185 9 C -0.029 4.029 10 C 0.586 3.414 11 O -0.542 6.542 12 N -0.701 5.701 13 C 0.167 3.833 14 H 0.082 0.918 15 C -0.143 4.143 16 C 0.148 3.852 17 N -0.587 5.587 18 C -0.258 4.258 19 H 0.060 0.940 20 C 0.013 3.987 21 N -0.899 5.899 22 Si 0.900 3.100 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.192 3.808 27 C -0.097 4.097 28 C -0.128 4.128 29 C -0.135 4.135 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.158 0.842 39 H 0.399 0.601 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.255 0.745 45 H 0.081 0.919 46 H 0.022 0.978 47 H 0.053 0.947 48 H 0.029 0.971 49 H 0.071 0.929 50 H 0.050 0.950 51 H 0.043 0.957 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.785 21.648 1.170 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.044 5.044 3 N -0.108 5.108 4 C -0.103 4.103 5 C -0.092 4.092 6 C -0.204 4.204 7 C -0.206 4.206 8 C -0.214 4.214 9 C -0.157 4.157 10 C 0.370 3.630 11 O -0.420 6.420 12 N -0.352 5.352 13 C 0.064 3.936 14 H 0.100 0.900 15 C -0.184 4.184 16 C 0.021 3.979 17 N -0.309 5.309 18 C -0.388 4.388 19 H 0.078 0.922 20 C -0.187 4.187 21 N -0.542 5.542 22 Si 0.730 3.270 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.065 3.935 27 C -0.100 4.100 28 C -0.185 4.185 29 C -0.193 4.193 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.176 0.824 39 H 0.235 0.765 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.090 0.910 50 H 0.070 0.930 51 H 0.062 0.938 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.011 22.183 1.075 22.300 hybrid contribution 1.344 -1.342 0.195 1.909 sum 3.356 20.842 1.270 21.148 Atomic orbital electron populations 1.22344 0.72317 1.05796 1.04825 1.45546 1.07832 1.01604 1.49399 1.73069 1.03619 1.13473 1.20602 1.20948 0.90852 0.92542 1.05924 1.20009 0.89572 0.99531 1.00116 1.23011 0.93961 1.00305 1.03092 1.22992 1.03360 1.00710 0.93494 1.22016 0.95662 0.94691 1.09072 1.21562 0.91173 0.90062 1.12950 1.16918 0.86036 0.82879 0.77123 1.90784 1.16205 1.84448 1.50544 1.46073 1.09396 1.06878 1.72846 1.21081 0.97896 0.77267 0.97396 0.89960 1.22462 1.01174 0.98877 0.95838 1.20897 0.91963 0.89027 0.96032 1.43909 1.46845 1.23297 1.16847 1.19037 1.36608 0.88850 0.94287 0.92231 1.25332 0.99346 0.97181 0.96798 1.69972 1.46481 1.31286 1.06419 0.86348 0.79754 0.83100 0.77825 1.21271 1.21602 1.20351 1.20718 0.98317 0.87205 0.87237 1.21595 0.94902 0.99420 0.94069 1.21755 0.96432 0.98729 1.01569 1.21784 1.01418 0.99454 0.96681 0.89719 0.88989 0.87068 0.86459 0.88240 0.88059 0.88318 0.88689 0.82419 0.76549 0.92657 0.91811 0.92539 0.96282 0.93544 0.90081 0.95990 0.92799 0.95171 0.91037 0.93038 0.93759 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.88 10.77 59.85 0.64 1.52 16 2 N -0.26 -3.30 3.75 -63.88 -0.24 -3.54 16 3 N -0.27 -3.58 11.90 33.64 0.40 -3.18 16 4 C 0.05 0.62 6.85 -82.47 -0.57 0.05 16 5 C -0.07 -0.64 6.33 -91.78 -0.58 -1.22 16 6 C -0.17 -1.15 10.02 -26.73 -0.27 -1.41 16 7 C -0.17 -1.25 10.23 -26.73 -0.27 -1.52 16 8 C -0.19 -2.11 9.79 -38.98 -0.38 -2.49 16 9 C -0.03 -0.38 6.96 -82.06 -0.57 -0.95 16 10 C 0.59 8.63 7.75 -12.64 -0.10 8.53 16 11 O -0.54 -9.33 14.41 5.26 0.08 -9.26 16 12 N -0.70 -9.67 4.28 -54.92 -0.24 -9.91 16 13 C 0.17 2.75 1.53 -67.89 -0.10 2.65 16 14 H 0.08 1.54 7.66 -51.92 -0.40 1.14 16 15 C -0.14 -2.52 5.31 -26.61 -0.14 -2.66 16 16 C 0.15 3.08 6.52 -3.71 -0.02 3.05 16 17 N -0.59 -13.92 2.38 -172.32 -0.41 -14.33 16 18 C -0.26 -6.77 9.49 -15.06 -0.14 -6.91 16 19 H 0.06 1.56 7.85 -52.49 -0.41 1.14 16 20 C 0.01 0.36 5.03 -17.43 -0.09 0.27 16 21 N -0.90 -25.30 11.55 55.49 0.64 -24.66 16 22 Si 0.90 21.05 29.56 -169.99 -5.03 16.02 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.19 4.25 3.90 -3.71 -0.01 4.24 16 27 C -0.10 -1.65 0.56 -154.39 -0.09 -1.74 16 28 C -0.13 -2.03 7.83 37.16 0.29 -1.74 16 29 C -0.14 -2.01 8.31 37.16 0.31 -1.70 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.11 1.21 6.44 -51.93 -0.33 0.88 16 33 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.10 0.68 7.22 -51.93 -0.38 0.30 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.16 1.40 7.01 -52.48 -0.37 1.03 16 39 H 0.40 4.67 5.70 -40.82 -0.23 4.44 16 40 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 41 H 0.06 1.11 6.33 -51.93 -0.33 0.78 16 42 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 2.01 6.63 -51.93 -0.34 1.67 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.03 0.38 6.58 -51.93 -0.34 0.04 16 49 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.04 0.56 7.37 -51.93 -0.38 0.18 16 52 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 404.96 15.07 6.10 6.10 Total: -1.00 -30.63 404.96 -9.23 -39.86 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -8.44 Total: 4.92 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.10 Total: -2.04 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.16 Total: -55.61 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.63 -9.23 -39.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940774063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.054 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds