Wall clock time and date at job start Wed Apr 1 2020 04:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28446 * 125.19197 * 2 1 4 4 C 1.30856 * 110.93211 * 180.28374 * 3 2 1 5 5 C 1.50697 * 126.07351 * 179.75450 * 4 3 2 6 6 C 1.52999 * 117.50177 * 163.57837 * 5 4 3 7 7 C 1.52995 * 117.50184 * 94.95141 * 5 4 3 8 8 C 1.39674 * 107.86022 * 359.71519 * 4 3 2 9 9 C 1.36601 * 125.19394 * 179.79227 * 2 1 3 10 10 C 1.47165 * 126.87968 * 359.97438 * 9 2 1 11 11 O 1.21623 * 120.00404 * 355.47891 * 10 9 2 12 12 N 1.34780 * 119.99592 * 175.48024 * 10 9 2 13 13 C 1.46500 * 120.00137 * 185.34058 * 12 10 9 14 14 H 1.09008 * 109.44616 * 34.96518 * 13 12 10 15 15 C 1.53036 * 109.45802 * 275.00001 * 13 12 10 16 16 C 1.53195 * 109.33887 * 178.62784 * 15 13 12 17 17 N 1.46927 * 108.77396 * 54.61554 * 16 15 13 18 18 C 1.36939 * 120.62527 * 126.41931 * 17 16 15 19 19 H 1.07999 * 119.99918 * 321.68207 * 18 17 16 20 20 C 1.38814 * 120.00027 * 141.69161 * 18 17 16 21 21 N 1.31619 * 119.99541 * 350.28553 * 20 18 17 22 22 Si 1.86793 * 120.00122 * 170.28942 * 20 18 17 23 23 H 1.48501 * 109.47112 * 89.99417 * 22 20 18 24 24 H 1.48497 * 109.47402 * 209.99526 * 22 20 18 25 25 H 1.48507 * 109.47226 * 329.99865 * 22 20 18 26 26 C 1.46922 * 118.74243 * 306.39243 * 17 16 15 27 27 C 1.53038 * 109.48913 * 154.90978 * 13 12 10 28 28 C 1.53004 * 109.46694 * 61.40468 * 27 13 12 29 29 C 1.52998 * 109.52372 * 301.34019 * 27 13 12 30 30 H 1.08994 * 109.47121 * 269.88304 * 1 2 3 31 31 H 1.09001 * 109.47495 * 29.89404 * 1 2 3 32 32 H 1.09005 * 109.46822 * 149.88817 * 1 2 3 33 33 H 1.09003 * 115.54796 * 309.28690 * 5 4 3 34 34 H 1.08993 * 117.49853 * 359.97438 * 6 5 4 35 35 H 1.08997 * 117.49833 * 145.01654 * 6 5 4 36 36 H 1.08998 * 117.50241 * 214.98259 * 7 5 4 37 37 H 1.08997 * 117.49827 * 0.02562 * 7 5 4 38 38 H 1.08004 * 127.32137 * 179.97438 * 8 4 3 39 39 H 0.96997 * 120.00082 * 5.33541 * 12 10 9 40 40 H 1.09002 * 109.50162 * 58.66274 * 15 13 12 41 41 H 1.08994 * 109.49837 * 298.59467 * 15 13 12 42 42 H 1.09004 * 109.58811 * 174.40862 * 16 15 13 43 43 H 1.09001 * 109.58450 * 294.69088 * 16 15 13 44 44 H 0.97004 * 119.99354 * 180.02562 * 21 20 18 45 45 H 1.08994 * 109.58723 * 173.39495 * 26 17 16 46 46 H 1.09006 * 109.58841 * 293.68125 * 26 17 16 47 47 H 1.08998 * 109.46479 * 179.85350 * 28 27 13 48 48 H 1.09001 * 109.47002 * 299.85438 * 28 27 13 49 49 H 1.08993 * 109.47244 * 59.85474 * 28 27 13 50 50 H 1.08999 * 109.47323 * 300.10825 * 29 27 13 51 51 H 1.09002 * 109.47115 * 60.11386 * 29 27 13 52 52 H 1.09005 * 109.46834 * 180.11279 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7274 -0.0061 5 6 4.6335 1.6893 -0.0132 6 6 6.0102 1.1388 0.3641 7 6 5.2590 2.0519 1.3351 8 6 3.5612 -0.6666 -0.0038 9 6 2.2523 -1.1163 0.0040 10 6 1.7993 -2.5165 0.0096 11 8 0.6132 -2.7717 0.0941 12 7 2.6990 -3.5161 -0.0788 13 6 2.2434 -4.9039 -0.1912 14 1 1.3264 -4.9383 -0.7795 15 6 1.9741 -5.4668 1.2062 16 6 1.4652 -6.9066 1.0837 17 7 2.4313 -7.6841 0.2958 18 6 2.9506 -8.8530 0.7851 19 1 3.1953 -8.9380 1.8336 20 6 3.1627 -9.9285 -0.0665 21 7 2.6925 -9.8973 -1.2955 22 14 4.1151 -11.4198 0.5317 23 1 3.1745 -12.3998 1.1318 24 1 4.8209 -12.0485 -0.6137 25 1 5.1072 -10.9968 1.5526 26 6 2.8291 -7.1842 -1.0272 27 6 3.3227 -5.7413 -0.8811 28 6 4.5998 -5.7213 -0.0387 29 6 3.6148 -5.1588 -2.2654 30 1 -0.3633 -0.0021 1.0276 31 1 -0.3634 0.8909 -0.5122 32 1 -0.3633 -0.8890 -0.5156 33 1 4.5939 2.4678 -0.7752 34 1 6.0769 0.0809 0.6180 35 1 6.8767 1.5548 -0.1498 36 1 5.6313 3.0686 1.4601 37 1 4.8317 1.5943 2.2274 38 1 4.4595 -1.2662 -0.0077 39 1 3.6482 -3.3167 -0.0681 40 1 1.2217 -4.8563 1.7056 41 1 2.8963 -5.4551 1.7871 42 1 1.3665 -7.3450 2.0768 43 1 0.4962 -6.9104 0.5846 44 1 2.8404 -10.6490 -1.8905 45 1 3.6303 -7.8057 -1.4269 46 1 1.9731 -7.2132 -1.7014 47 1 5.3676 -6.3199 -0.5289 48 1 4.9505 -4.6945 0.0650 49 1 4.3909 -6.1353 0.9477 50 1 2.7044 -5.1722 -2.8647 51 1 3.9659 -4.1322 -2.1609 52 1 4.3821 -5.7571 -2.7568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940774063.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:36 Heat of formation + Delta-G solvation = 66.278097 kcal Electronic energy + Delta-G solvation = -31633.324712 eV Core-core repulsion = 27635.070628 eV Total energy + Delta-G solvation = -3998.254084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.63141 -41.26385 -39.45505 -38.06001 -36.30295 -34.58846 -33.84880 -33.75142 -32.26061 -30.85821 -28.22156 -28.11811 -27.57406 -26.93888 -24.91589 -24.19203 -23.36887 -22.91145 -22.28561 -21.49345 -20.71811 -19.58918 -19.03334 -18.30148 -17.43917 -17.32433 -16.87483 -16.73667 -16.30026 -15.83867 -15.65890 -15.41294 -15.20765 -15.17994 -15.09827 -14.85679 -14.57812 -14.28588 -13.83378 -13.78113 -13.47342 -13.25064 -12.99669 -12.90815 -12.87075 -12.72750 -12.63671 -12.41605 -12.33423 -12.26695 -12.06510 -11.90934 -11.86410 -11.63509 -11.51235 -11.35476 -11.26852 -11.14304 -10.99889 -10.54425 -10.30705 -9.96979 -9.79365 -8.50693 -7.85593 -5.43099 0.17441 1.32454 1.45016 1.47982 1.49379 1.58370 2.10816 2.14901 2.51533 2.96118 3.30692 3.35926 3.52559 3.68414 3.73761 3.91514 3.98550 4.05570 4.11594 4.16495 4.23547 4.27861 4.35727 4.39858 4.46648 4.49086 4.57985 4.60968 4.66787 4.77684 4.83393 4.88557 4.88999 4.96439 5.00375 5.07265 5.09552 5.12610 5.25860 5.26974 5.33268 5.34866 5.35574 5.43779 5.44768 5.50527 5.63264 5.67691 5.70815 5.75288 6.41586 6.47236 6.99187 7.08326 7.19733 7.84556 8.43672 9.19919 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017781 B = 0.002592 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.336423 B =10799.195804 C =11591.244572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.266 5.266 3 N -0.291 5.291 4 C 0.048 3.952 5 C -0.091 4.091 6 C -0.152 4.152 7 C -0.167 4.167 8 C -0.174 4.174 9 C -0.050 4.050 10 C 0.589 3.411 11 O -0.571 6.571 12 N -0.688 5.688 13 C 0.180 3.820 14 H 0.058 0.942 15 C -0.128 4.128 16 C 0.145 3.855 17 N -0.601 5.601 18 C -0.263 4.263 19 H 0.061 0.939 20 C -0.038 4.038 21 N -0.932 5.932 22 Si 0.963 3.037 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.267 1.267 26 C 0.202 3.798 27 C -0.086 4.086 28 C -0.122 4.122 29 C -0.131 4.131 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.186 0.814 39 H 0.413 0.587 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.003 0.997 44 H 0.250 0.750 45 H 0.051 0.949 46 H -0.012 1.012 47 H 0.047 0.953 48 H 0.072 0.928 49 H 0.051 0.949 50 H 0.041 0.959 51 H 0.075 0.925 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.196 23.781 1.917 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.053 5.053 3 N -0.125 5.125 4 C -0.108 4.108 5 C -0.110 4.110 6 C -0.189 4.189 7 C -0.205 4.205 8 C -0.203 4.203 9 C -0.178 4.178 10 C 0.375 3.625 11 O -0.451 6.451 12 N -0.339 5.339 13 C 0.076 3.924 14 H 0.076 0.924 15 C -0.168 4.168 16 C 0.019 3.981 17 N -0.323 5.323 18 C -0.393 4.393 19 H 0.079 0.921 20 C -0.235 4.235 21 N -0.576 5.576 22 Si 0.791 3.209 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.191 1.191 26 C 0.075 3.925 27 C -0.088 4.088 28 C -0.179 4.179 29 C -0.188 4.188 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.103 0.897 38 H 0.203 0.797 39 H 0.251 0.749 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.021 0.979 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.006 0.994 47 H 0.066 0.934 48 H 0.090 0.910 49 H 0.070 0.930 50 H 0.060 0.940 51 H 0.094 0.906 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.442 24.352 1.839 24.822 hybrid contribution 0.525 -1.942 -0.014 2.012 sum 4.967 22.410 1.825 23.027 Atomic orbital electron populations 1.22446 0.71498 1.06189 1.05409 1.45783 1.08535 1.01464 1.49494 1.73071 1.04523 1.13750 1.21147 1.21465 0.91070 0.93318 1.04931 1.20138 0.89710 0.99919 1.01275 1.23136 0.93297 1.00519 1.01947 1.23044 1.03150 1.01785 0.92526 1.22379 0.95733 0.94884 1.07290 1.21426 0.92166 0.89257 1.14951 1.17089 0.85542 0.83580 0.76240 1.90777 1.17572 1.84976 1.51798 1.45727 1.10061 1.05376 1.72773 1.20669 0.96809 0.78763 0.96195 0.92386 1.22258 1.01484 0.96390 0.96708 1.20954 0.90935 0.90905 0.95291 1.44117 1.47584 1.23310 1.17336 1.19328 1.35882 0.89719 0.94399 0.92146 1.26037 1.00649 0.99791 0.96976 1.70132 1.48145 1.31858 1.07504 0.85352 0.78509 0.79732 0.77277 1.21417 1.21936 1.19131 1.20490 0.95997 0.90106 0.85889 1.21348 0.95508 0.95953 0.96029 1.21689 0.95276 1.01122 0.99813 1.21745 1.01173 1.01066 0.94857 0.89044 0.86991 0.88262 0.85900 0.87860 0.86227 0.86834 0.89744 0.79701 0.74852 0.92292 0.90769 0.92575 0.97907 0.94066 0.93056 0.99352 0.93408 0.90972 0.93007 0.94005 0.90631 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.64 10.77 127.77 1.38 3.02 16 2 N -0.27 -6.50 3.75 -356.02 -1.33 -7.83 16 3 N -0.29 -7.14 11.90 -47.50 -0.57 -7.71 16 4 C 0.05 1.00 6.85 43.05 0.30 1.29 16 5 C -0.09 -1.35 6.33 -11.54 -0.07 -1.42 16 6 C -0.15 -1.53 10.02 30.59 0.31 -1.22 16 7 C -0.17 -2.03 10.23 30.59 0.31 -1.72 16 8 C -0.17 -3.44 9.79 22.66 0.22 -3.22 16 9 C -0.05 -1.22 6.96 40.79 0.28 -0.94 16 10 C 0.59 16.53 7.75 86.59 0.67 17.20 16 11 O -0.57 -19.55 14.41 -4.10 -0.06 -19.61 16 12 N -0.69 -17.41 4.28 -445.93 -1.91 -19.32 16 13 C 0.18 5.82 1.53 45.02 0.07 5.89 16 14 H 0.06 2.20 7.66 -2.38 -0.02 2.18 16 15 C -0.13 -4.43 5.31 30.67 0.16 -4.27 16 16 C 0.15 6.19 6.52 86.36 0.56 6.75 16 17 N -0.60 -29.21 2.38 -699.09 -1.66 -30.87 16 18 C -0.26 -14.00 9.49 84.03 0.80 -13.20 16 19 H 0.06 3.16 7.85 -2.91 -0.02 3.14 16 20 C -0.04 -2.07 5.03 84.86 0.43 -1.64 16 21 N -0.93 -54.18 11.55 21.65 0.25 -53.93 16 22 Si 0.96 43.76 29.56 68.60 2.03 45.79 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 C 0.20 9.23 3.90 86.36 0.34 9.56 16 27 C -0.09 -2.86 0.56 -52.10 -0.03 -2.89 16 28 C -0.12 -3.61 7.83 71.98 0.56 -3.04 16 29 C -0.13 -3.68 8.31 71.98 0.60 -3.08 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 2.19 6.44 -2.38 -0.02 2.17 16 33 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 0.97 7.22 -2.39 -0.02 0.96 16 35 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.19 2.44 7.01 -2.91 -0.02 2.42 16 39 H 0.41 8.05 5.70 -92.71 -0.53 7.52 16 40 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 41 H 0.07 2.44 6.33 -2.39 -0.02 2.42 16 42 H 0.06 2.34 7.93 -2.39 -0.02 2.33 16 43 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.05 2.64 6.63 -2.39 -0.02 2.62 16 46 H -0.01 -0.60 8.14 -2.38 -0.02 -0.61 16 47 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 1.52 6.58 -2.39 -0.02 1.51 16 49 H 0.05 1.76 5.97 -2.39 -0.01 1.75 16 50 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.07 1.66 7.37 -2.39 -0.02 1.65 16 52 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -68.53 404.96 4.03 -64.50 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.40 Total: 21.91 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.88 Total: 7.07 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -5.22 Total: -119.66 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.06 Total: -19.61 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.53 4.03 -64.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940774063.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.777 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds