Wall clock time and date at job start Wed Apr 1 2020 04:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.51850 * 2 1 4 4 C 1.53191 * 109.49666 * 239.92443 * 2 1 3 5 5 N 1.46932 * 108.77236 * 294.68313 * 4 2 1 6 6 C 1.36936 * 120.63221 * 126.37307 * 5 4 2 7 7 H 1.07998 * 119.99826 * 331.85827 * 6 5 4 8 8 C 1.38808 * 119.99888 * 151.86526 * 6 5 4 9 9 N 1.31622 * 119.99945 * 343.05989 * 8 6 5 10 10 Si 1.86797 * 120.00119 * 163.06301 * 8 6 5 11 11 H 1.48501 * 109.47037 * 59.99690 * 10 8 6 12 12 H 1.48502 * 109.47688 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47350 * 299.99886 * 10 8 6 14 14 C 1.46928 * 118.73762 * 306.38640 * 5 4 2 15 15 C 1.53202 * 108.77109 * 53.61376 * 14 5 4 16 16 C 1.53038 * 109.31096 * 305.36092 * 15 14 5 17 17 H 1.09002 * 109.46571 * 301.34619 * 16 15 14 18 18 N 1.46498 * 109.45872 * 181.37247 * 16 15 14 19 19 C 1.34775 * 120.00241 * 84.97509 * 18 16 15 20 20 O 1.21625 * 119.99577 * 359.97438 * 19 18 16 21 21 C 1.47323 * 120.00381 * 180.02562 * 19 18 16 22 22 C 1.36579 * 126.21172 * 180.02562 * 21 19 18 23 23 N 1.34867 * 106.78544 * 179.97438 * 22 21 19 24 24 C 1.36311 * 107.86467 * 0.07349 * 23 22 21 25 25 N 1.29791 * 108.92004 * 359.66920 * 24 23 22 26 26 C 1.51096 * 123.90395 * 179.86688 * 24 23 22 27 27 C 1.53390 * 108.19448 * 344.07884 * 26 24 23 28 28 C 1.53137 * 109.25180 * 48.94403 * 27 26 24 29 29 C 1.46575 * 127.50081 * 180.13816 * 23 22 21 30 30 H 1.09001 * 109.46913 * 299.91528 * 1 2 3 31 31 H 1.08995 * 109.47195 * 59.92060 * 1 2 3 32 32 H 1.08998 * 109.46451 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46420 * 180.08173 * 3 2 1 34 34 H 1.08996 * 109.47123 * 300.08158 * 3 2 1 35 35 H 1.09001 * 109.46824 * 60.08820 * 3 2 1 36 36 H 1.08994 * 109.58826 * 174.89177 * 4 2 1 37 37 H 1.09002 * 109.70606 * 54.53579 * 4 2 1 38 38 H 0.97006 * 119.99906 * 180.02562 * 9 8 6 39 39 H 1.08995 * 109.59085 * 293.83158 * 14 5 4 40 40 H 1.08994 * 109.70405 * 173.46886 * 14 5 4 41 41 H 1.09002 * 109.49457 * 185.41761 * 15 14 5 42 42 H 1.08996 * 109.52219 * 65.33293 * 15 14 5 43 43 H 0.97006 * 120.00314 * 264.98116 * 18 16 15 44 44 H 1.07999 * 126.60671 * 359.88610 * 22 21 19 45 45 H 1.09001 * 109.71707 * 224.40515 * 26 24 23 46 46 H 1.08996 * 109.75750 * 103.77332 * 26 24 23 47 47 H 1.09008 * 109.50505 * 289.01403 * 27 26 24 48 48 H 1.09006 * 109.51084 * 168.88134 * 27 26 24 49 49 H 1.09001 * 109.46148 * 170.18059 * 28 27 26 50 50 H 1.08999 * 109.45559 * 50.21210 * 28 27 26 51 51 H 1.09001 * 109.58573 * 282.57838 * 29 23 22 52 52 H 1.08999 * 109.58995 * 42.99283 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0414 -0.7237 -1.2496 5 7 1.6515 -2.1381 -1.1697 6 6 0.9631 -2.7311 -2.1942 7 1 0.3192 -2.1380 -2.8265 8 6 1.0930 -4.0946 -2.4198 9 7 2.1012 -4.7559 -1.8921 10 14 -0.1631 -4.9908 -3.4726 11 1 -0.1775 -4.4013 -4.8355 12 1 0.1990 -6.4284 -3.5594 13 1 -1.5092 -4.8551 -2.8604 14 6 2.0141 -2.9040 0.0306 15 6 1.5031 -2.1558 1.2659 16 6 2.0409 -0.7231 1.2483 17 1 3.1307 -0.7444 1.2352 18 7 1.5810 -0.0144 2.4451 19 6 2.2698 -0.1219 3.5984 20 8 3.2731 -0.8078 3.6458 21 6 1.8070 0.5903 4.8021 22 6 2.4041 0.5716 6.0304 23 7 1.6586 1.3534 6.8378 24 6 0.6178 1.8399 6.1042 25 7 0.7112 1.3892 4.8907 26 6 -0.4471 2.7579 6.6578 27 6 -0.3796 2.7011 8.1891 28 6 1.0724 2.8895 8.6379 29 6 1.8918 1.6529 8.2535 30 1 -0.3633 0.5125 0.8908 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1314 1.4411 -0.0015 34 1 1.6772 1.9567 -0.8892 35 1 1.6796 1.9557 0.8908 36 1 3.1275 -0.6461 -1.2982 37 1 1.6028 -0.2736 -2.1403 38 1 2.1921 -5.7087 -2.0501 39 1 3.0980 -3.0042 0.0866 40 1 1.5575 -3.8928 -0.0126 41 1 1.8483 -2.6628 2.1670 42 1 0.4134 -2.1355 1.2546 43 1 0.7805 0.5323 2.4074 44 1 3.2998 0.0333 6.3029 45 1 -1.4294 2.4271 6.3204 46 1 -0.2663 3.7781 6.3193 47 1 -0.7445 1.7335 8.5339 48 1 -0.9967 3.4947 8.6104 49 1 1.1038 3.0243 9.7191 50 1 1.4920 3.7693 8.1500 51 1 1.5803 0.8044 8.8627 52 1 2.9512 1.8519 8.4153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940781234.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:56 Heat of formation + Delta-G solvation = 32.255079 kcal Electronic energy + Delta-G solvation = -31447.331652 eV Core-core repulsion = 27447.602219 eV Total energy + Delta-G solvation = -3999.729433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.58242 -39.68043 -37.91206 -36.78877 -34.47656 -33.75416 -32.84680 -31.28215 -30.45995 -29.51002 -28.87341 -26.75877 -25.80541 -25.48367 -24.53583 -23.02804 -22.60583 -21.66275 -20.57025 -19.75509 -19.38235 -18.22648 -17.42417 -16.73666 -16.39996 -16.22976 -15.57857 -14.85092 -14.75256 -14.69796 -14.41424 -14.25600 -14.02592 -13.93122 -13.87892 -13.60108 -13.55647 -13.16261 -12.90369 -12.63014 -12.29787 -12.09286 -11.73705 -11.65808 -11.61030 -11.56646 -11.34083 -11.22412 -10.90043 -10.79848 -10.54587 -10.49057 -10.38156 -10.26143 -10.08607 -9.91303 -9.85657 -9.71642 -9.57331 -9.30392 -8.65401 -8.44882 -8.24252 -6.57026 -5.69862 -3.12226 1.56654 2.32475 2.34795 3.43869 3.49825 3.50871 3.61843 3.76760 3.83219 4.03899 4.09282 4.14752 4.56493 4.57571 4.69378 4.80822 4.83167 5.07515 5.12282 5.16603 5.24786 5.30830 5.33676 5.38994 5.47201 5.53101 5.55797 5.58649 5.72149 5.90291 6.00798 6.04549 6.11311 6.26434 6.30663 6.36094 6.41395 6.51474 6.57925 6.69119 6.71680 6.80143 6.81792 6.93134 6.96289 7.11014 7.16312 7.49615 7.65254 7.78458 7.87982 8.06159 8.53803 8.65780 9.29937 9.93617 10.50996 11.38521 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021488 B = 0.002329 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.757665 B =12017.566503 C =12178.105012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 C -0.137 4.137 4 C 0.160 3.840 5 N -0.588 5.588 6 C -0.250 4.250 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.283 1.283 12 H -0.292 1.292 13 H -0.285 1.285 14 C 0.175 3.825 15 C -0.150 4.150 16 C 0.164 3.836 17 H 0.080 0.920 18 N -0.705 5.705 19 C 0.598 3.402 20 O -0.548 6.548 21 C -0.056 4.056 22 C 0.031 3.969 23 N -0.456 5.456 24 C 0.206 3.794 25 N -0.456 5.456 26 C -0.033 4.033 27 C -0.126 4.126 28 C -0.135 4.135 29 C 0.101 3.899 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.019 0.981 37 H 0.057 0.943 38 H 0.254 0.746 39 H 0.019 0.981 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.402 0.598 44 H 0.188 0.812 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.077 0.923 51 H 0.088 0.912 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 18.062 23.414 29.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.194 4.194 4 C 0.033 3.967 5 N -0.310 5.310 6 C -0.379 4.379 7 H 0.082 0.918 8 C -0.197 4.197 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.211 1.211 14 C 0.048 3.952 15 C -0.190 4.190 16 C 0.061 3.939 17 H 0.098 0.902 18 N -0.355 5.355 19 C 0.383 3.617 20 O -0.426 6.426 21 C -0.185 4.185 22 C -0.107 4.107 23 N -0.138 5.138 24 C -0.058 4.058 25 N -0.176 5.176 26 C -0.072 4.072 27 C -0.164 4.164 28 C -0.173 4.173 29 C -0.021 4.021 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.238 0.762 44 H 0.205 0.795 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.109 0.891 50 H 0.095 0.905 51 H 0.106 0.894 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.284 17.555 22.848 29.000 hybrid contribution -0.312 -0.520 0.211 0.642 sum -3.596 17.035 23.059 28.894 Atomic orbital electron populations 1.21786 0.94455 1.02979 0.99613 1.21340 0.96465 0.94567 0.96669 1.21804 1.00722 0.95955 1.00966 1.20911 0.96169 0.86144 0.93511 1.44035 1.65056 1.05422 1.16529 1.19107 1.18526 0.91663 1.08628 0.91774 1.25042 0.97145 0.98186 0.99307 1.70033 1.28264 1.08323 1.47982 0.86395 0.81475 0.78758 0.80270 1.20977 1.21749 1.21115 1.20745 0.96851 0.95524 0.82060 1.22632 1.00854 0.94879 1.00608 1.21003 0.99163 0.91717 0.82065 0.90182 1.46113 1.29535 1.50010 1.09825 1.16888 0.82928 0.80055 0.81809 1.90794 1.25891 1.41251 1.84699 1.20792 0.97071 1.05724 0.94938 1.22438 0.99308 0.98442 0.90537 1.45297 1.21299 1.36475 1.10764 1.23481 0.92916 1.02141 0.87249 1.70381 1.18208 1.11782 1.17233 1.20227 0.95453 0.97212 0.94293 1.21689 0.96336 1.03502 0.94908 1.21904 0.95620 0.97053 1.02727 1.22080 1.02111 0.99460 0.78434 0.94497 0.93240 0.90701 0.93066 0.92830 0.93248 0.96318 0.92433 0.93635 0.96253 0.89347 0.92951 0.92222 0.76155 0.79541 0.88452 0.89124 0.90994 0.89791 0.89111 0.90455 0.89402 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 7.83 37.16 0.29 -1.96 16 2 C -0.09 -1.57 0.56 -154.38 -0.09 -1.66 16 3 C -0.14 -2.08 8.31 37.16 0.31 -1.78 16 4 C 0.16 3.42 5.20 -3.71 -0.02 3.40 16 5 N -0.59 -14.88 2.43 -172.32 -0.42 -15.30 16 6 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 7 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 8 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 9 N -0.90 -26.74 11.19 55.49 0.62 -26.12 16 10 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.17 4.38 5.30 -3.70 -0.02 4.36 16 15 C -0.15 -3.19 5.31 -26.61 -0.14 -3.33 16 16 C 0.16 3.13 1.57 -67.89 -0.11 3.03 16 17 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 18 N -0.71 -12.08 4.28 -54.87 -0.24 -12.32 16 19 C 0.60 10.69 7.78 -12.57 -0.10 10.60 16 20 O -0.55 -11.37 16.54 5.26 0.09 -11.28 16 21 C -0.06 -0.85 6.98 -82.97 -0.58 -1.43 16 22 C 0.03 0.38 11.32 -16.82 -0.19 0.19 16 23 N -0.46 -4.25 3.11 -113.43 -0.35 -4.61 16 24 C 0.21 2.18 7.64 -154.64 -1.18 1.00 16 25 N -0.46 -6.39 11.00 -7.01 -0.08 -6.47 16 26 C -0.03 -0.21 6.33 -27.49 -0.17 -0.38 16 27 C -0.13 -0.47 5.95 -26.46 -0.16 -0.63 16 28 C -0.14 -0.42 5.93 -26.54 -0.16 -0.58 16 29 C 0.10 0.48 6.96 -3.88 -0.03 0.46 16 30 H 0.04 0.56 6.58 -51.93 -0.34 0.22 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.49 5.97 -51.93 -0.31 1.18 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.71 7.36 -51.93 -0.38 0.33 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.26 6.34 -51.93 -0.33 0.94 16 43 H 0.40 6.42 6.37 -40.82 -0.26 6.16 16 44 H 0.19 1.93 8.06 -52.49 -0.42 1.50 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.30 8.12 -51.92 -0.42 -0.13 16 48 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 50 H 0.08 0.28 8.11 -51.93 -0.42 -0.15 16 51 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 399.32 15.07 6.02 6.02 Total: -1.00 -34.04 399.32 -10.59 -44.62 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.63 Total: 4.19 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -2.57 Total: 4.24 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.46 Total: -64.82 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.04 -10.59 -44.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940781234.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.879 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds