Wall clock time and date at job start Wed Apr 1 2020 04:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.51850 * 2 1 4 4 C 1.53191 * 109.49666 * 239.92443 * 2 1 3 5 5 N 1.46932 * 108.77236 * 294.68313 * 4 2 1 6 6 C 1.36936 * 120.63221 * 126.37307 * 5 4 2 7 7 H 1.07998 * 119.99826 * 331.85827 * 6 5 4 8 8 C 1.38808 * 119.99888 * 151.86526 * 6 5 4 9 9 N 1.31622 * 119.99945 * 343.05989 * 8 6 5 10 10 Si 1.86797 * 120.00119 * 163.06301 * 8 6 5 11 11 H 1.48501 * 109.47037 * 59.99690 * 10 8 6 12 12 H 1.48502 * 109.47688 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47350 * 299.99886 * 10 8 6 14 14 C 1.46928 * 118.73762 * 306.38640 * 5 4 2 15 15 C 1.53202 * 108.77109 * 53.61376 * 14 5 4 16 16 C 1.53038 * 109.31096 * 305.36092 * 15 14 5 17 17 H 1.09002 * 109.46571 * 301.34619 * 16 15 14 18 18 N 1.46498 * 109.45872 * 181.37247 * 16 15 14 19 19 C 1.34775 * 120.00241 * 84.97509 * 18 16 15 20 20 O 1.21625 * 119.99577 * 359.97438 * 19 18 16 21 21 C 1.47323 * 120.00381 * 180.02562 * 19 18 16 22 22 C 1.36579 * 126.21172 * 180.02562 * 21 19 18 23 23 N 1.34867 * 106.78544 * 179.97438 * 22 21 19 24 24 C 1.36311 * 107.86467 * 0.07349 * 23 22 21 25 25 N 1.29791 * 108.92004 * 359.66920 * 24 23 22 26 26 C 1.51096 * 123.90395 * 179.86688 * 24 23 22 27 27 C 1.53390 * 108.19448 * 344.07884 * 26 24 23 28 28 C 1.53137 * 109.25180 * 48.94403 * 27 26 24 29 29 C 1.46575 * 127.50081 * 180.13816 * 23 22 21 30 30 H 1.09001 * 109.46913 * 299.91528 * 1 2 3 31 31 H 1.08995 * 109.47195 * 59.92060 * 1 2 3 32 32 H 1.08998 * 109.46451 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46420 * 180.08173 * 3 2 1 34 34 H 1.08996 * 109.47123 * 300.08158 * 3 2 1 35 35 H 1.09001 * 109.46824 * 60.08820 * 3 2 1 36 36 H 1.08994 * 109.58826 * 174.89177 * 4 2 1 37 37 H 1.09002 * 109.70606 * 54.53579 * 4 2 1 38 38 H 0.97006 * 119.99906 * 180.02562 * 9 8 6 39 39 H 1.08995 * 109.59085 * 293.83158 * 14 5 4 40 40 H 1.08994 * 109.70405 * 173.46886 * 14 5 4 41 41 H 1.09002 * 109.49457 * 185.41761 * 15 14 5 42 42 H 1.08996 * 109.52219 * 65.33293 * 15 14 5 43 43 H 0.97006 * 120.00314 * 264.98116 * 18 16 15 44 44 H 1.07999 * 126.60671 * 359.88610 * 22 21 19 45 45 H 1.09001 * 109.71707 * 224.40515 * 26 24 23 46 46 H 1.08996 * 109.75750 * 103.77332 * 26 24 23 47 47 H 1.09008 * 109.50505 * 289.01403 * 27 26 24 48 48 H 1.09006 * 109.51084 * 168.88134 * 27 26 24 49 49 H 1.09001 * 109.46148 * 170.18059 * 28 27 26 50 50 H 1.08999 * 109.45559 * 50.21210 * 28 27 26 51 51 H 1.09001 * 109.58573 * 282.57838 * 29 23 22 52 52 H 1.08999 * 109.58995 * 42.99283 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0414 -0.7237 -1.2496 5 7 1.6515 -2.1381 -1.1697 6 6 0.9631 -2.7311 -2.1942 7 1 0.3192 -2.1380 -2.8265 8 6 1.0930 -4.0946 -2.4198 9 7 2.1012 -4.7559 -1.8921 10 14 -0.1631 -4.9908 -3.4726 11 1 -0.1775 -4.4013 -4.8355 12 1 0.1990 -6.4284 -3.5594 13 1 -1.5092 -4.8551 -2.8604 14 6 2.0141 -2.9040 0.0306 15 6 1.5031 -2.1558 1.2659 16 6 2.0409 -0.7231 1.2483 17 1 3.1307 -0.7444 1.2352 18 7 1.5810 -0.0144 2.4451 19 6 2.2698 -0.1219 3.5984 20 8 3.2731 -0.8078 3.6458 21 6 1.8070 0.5903 4.8021 22 6 2.4041 0.5716 6.0304 23 7 1.6586 1.3534 6.8378 24 6 0.6178 1.8399 6.1042 25 7 0.7112 1.3892 4.8907 26 6 -0.4471 2.7579 6.6578 27 6 -0.3796 2.7011 8.1891 28 6 1.0724 2.8895 8.6379 29 6 1.8918 1.6529 8.2535 30 1 -0.3633 0.5125 0.8908 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1314 1.4411 -0.0015 34 1 1.6772 1.9567 -0.8892 35 1 1.6796 1.9557 0.8908 36 1 3.1275 -0.6461 -1.2982 37 1 1.6028 -0.2736 -2.1403 38 1 2.1921 -5.7087 -2.0501 39 1 3.0980 -3.0042 0.0866 40 1 1.5575 -3.8928 -0.0126 41 1 1.8483 -2.6628 2.1670 42 1 0.4134 -2.1355 1.2546 43 1 0.7805 0.5323 2.4074 44 1 3.2998 0.0333 6.3029 45 1 -1.4294 2.4271 6.3204 46 1 -0.2663 3.7781 6.3193 47 1 -0.7445 1.7335 8.5339 48 1 -0.9967 3.4947 8.6104 49 1 1.1038 3.0243 9.7191 50 1 1.4920 3.7693 8.1500 51 1 1.5803 0.8044 8.8627 52 1 2.9512 1.8519 8.4153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940781234.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:55 Heat of formation + Delta-G solvation = 11.853019 kcal Electronic energy + Delta-G solvation = -31448.216352 eV Core-core repulsion = 27447.602219 eV Total energy + Delta-G solvation = -4000.614132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.41277 -41.20613 -39.41864 -37.35516 -36.31566 -34.61745 -34.23458 -33.20703 -31.84141 -30.72011 -29.59080 -28.15646 -27.46586 -27.06901 -25.48858 -24.36582 -23.20244 -23.03773 -22.45327 -21.08299 -19.96673 -19.63815 -18.82952 -18.36802 -17.28709 -17.18241 -17.05181 -16.60861 -15.91182 -15.78792 -15.57081 -15.28770 -15.26241 -15.04650 -14.86680 -14.85270 -14.67883 -14.55800 -14.28409 -14.07507 -13.86207 -13.12798 -13.12457 -12.83553 -12.78228 -12.68347 -12.56466 -12.32937 -12.26536 -12.09716 -12.06975 -11.98106 -11.97098 -11.89497 -11.61508 -11.35223 -11.31880 -11.21659 -10.95162 -10.69025 -10.53193 -9.99215 -9.45248 -8.66857 -7.84560 -5.30323 0.55315 1.37614 1.47766 1.50747 1.57241 1.64943 2.31220 2.52395 2.53051 3.15927 3.30818 3.57157 3.63492 3.65605 3.71364 3.82234 3.97412 4.00921 4.06524 4.10831 4.34732 4.38490 4.42034 4.45619 4.45766 4.52037 4.62785 4.70528 4.83075 4.84738 4.87483 4.92520 4.94837 4.98149 5.00503 5.03159 5.09967 5.11313 5.15983 5.21604 5.28722 5.32417 5.39497 5.40861 5.44520 5.58247 5.61776 5.66104 5.72951 6.07758 6.40403 6.54841 6.88931 7.15241 7.28539 7.86013 8.40353 9.22478 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021488 B = 0.002329 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.757665 B =12017.566503 C =12178.105012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.077 4.077 3 C -0.128 4.128 4 C 0.156 3.844 5 N -0.601 5.601 6 C -0.255 4.255 7 H 0.072 0.928 8 C -0.055 4.055 9 N -0.939 5.939 10 Si 0.968 3.032 11 H -0.273 1.273 12 H -0.298 1.298 13 H -0.278 1.278 14 C 0.186 3.814 15 C -0.133 4.133 16 C 0.176 3.824 17 H 0.055 0.945 18 N -0.696 5.696 19 C 0.595 3.405 20 O -0.587 6.587 21 C -0.096 4.096 22 C 0.041 3.959 23 N -0.448 5.448 24 C 0.210 3.790 25 N -0.488 5.488 26 C -0.035 4.035 27 C -0.122 4.122 28 C -0.131 4.131 29 C 0.089 3.911 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.008 0.992 37 H 0.066 0.934 38 H 0.249 0.751 39 H -0.011 1.011 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.411 0.589 44 H 0.199 0.801 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.069 0.931 48 H 0.107 0.893 49 H 0.119 0.881 50 H 0.075 0.925 51 H 0.102 0.898 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 21.077 25.528 33.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.080 4.080 3 C -0.186 4.186 4 C 0.030 3.970 5 N -0.323 5.323 6 C -0.385 4.385 7 H 0.090 0.910 8 C -0.250 4.250 9 N -0.585 5.585 10 Si 0.796 3.204 11 H -0.199 1.199 12 H -0.224 1.224 13 H -0.204 1.204 14 C 0.059 3.941 15 C -0.173 4.173 16 C 0.071 3.929 17 H 0.073 0.927 18 N -0.346 5.346 19 C 0.383 3.617 20 O -0.468 6.468 21 C -0.224 4.224 22 C -0.100 4.100 23 N -0.128 5.128 24 C -0.055 4.055 25 N -0.208 5.208 26 C -0.073 4.073 27 C -0.160 4.160 28 C -0.168 4.168 29 C -0.031 4.031 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.007 0.993 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.249 0.751 44 H 0.216 0.784 45 H 0.116 0.884 46 H 0.121 0.879 47 H 0.087 0.913 48 H 0.126 0.874 49 H 0.137 0.863 50 H 0.094 0.906 51 H 0.120 0.880 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.195 20.636 24.990 32.823 hybrid contribution 0.302 -1.392 -0.337 1.464 sum -4.893 19.243 24.654 31.655 Atomic orbital electron populations 1.21701 0.93301 1.01634 1.01461 1.21190 0.97202 0.95699 0.93877 1.21732 1.00496 0.93777 1.02602 1.21078 0.95717 0.84399 0.95780 1.44212 1.65136 1.06862 1.16133 1.19476 1.18312 0.92068 1.08614 0.90996 1.25851 0.98907 0.99086 1.01139 1.70209 1.30216 1.08108 1.49951 0.85327 0.79088 0.76956 0.78993 1.19862 1.22422 1.20405 1.20430 0.94692 0.94903 0.84040 1.22384 1.00788 0.96093 0.98081 1.20658 0.97593 0.90768 0.83867 0.92671 1.45884 1.29783 1.49777 1.09109 1.17331 0.82257 0.79513 0.82589 1.90761 1.27573 1.43066 1.85402 1.20464 0.99133 1.08008 0.94784 1.22626 0.99358 0.97971 0.90081 1.45597 1.20113 1.34908 1.12231 1.24298 0.93408 1.01304 0.86525 1.70295 1.18325 1.12742 1.19470 1.20482 0.93977 0.96674 0.96215 1.21707 0.97250 1.04311 0.92690 1.21946 0.94646 0.95806 1.04402 1.22553 1.03760 1.01038 0.75706 0.92180 0.91845 0.93573 0.93469 0.90811 0.91922 0.97395 0.91529 0.94247 0.99322 0.92467 0.93940 0.91814 0.75144 0.78366 0.88351 0.87937 0.91258 0.87444 0.86309 0.90641 0.87976 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 7.83 71.98 0.56 -3.51 16 2 C -0.08 -2.74 0.56 -52.10 -0.03 -2.76 16 3 C -0.13 -3.68 8.31 71.98 0.60 -3.08 16 4 C 0.16 6.76 5.20 86.36 0.45 7.20 16 5 N -0.60 -31.34 2.43 -699.09 -1.70 -33.04 16 6 C -0.25 -14.23 9.58 84.03 0.81 -13.43 16 7 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 8 C -0.05 -3.16 4.92 84.86 0.42 -2.74 16 9 N -0.94 -58.01 11.19 21.65 0.24 -57.76 16 10 Si 0.97 46.13 29.59 68.60 2.03 48.16 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.19 9.90 5.30 86.37 0.46 10.36 16 15 C -0.13 -5.95 5.31 30.67 0.16 -5.79 16 16 C 0.18 6.90 1.57 45.02 0.07 6.97 16 17 H 0.06 2.46 7.58 -2.39 -0.02 2.45 16 18 N -0.70 -24.06 4.28 -445.77 -1.91 -25.97 16 19 C 0.60 21.85 7.78 86.63 0.67 22.52 16 20 O -0.59 -25.42 16.54 -4.11 -0.07 -25.49 16 21 C -0.10 -2.90 6.98 40.52 0.28 -2.62 16 22 C 0.04 0.96 11.32 83.84 0.95 1.91 16 23 N -0.45 -7.45 3.11 -512.77 -1.60 -9.04 16 24 C 0.21 4.06 7.64 138.05 1.05 5.12 16 25 N -0.49 -13.28 11.00 -176.08 -1.94 -15.22 16 26 C -0.03 -0.35 6.33 30.10 0.19 -0.15 16 27 C -0.12 -0.45 5.95 30.77 0.18 -0.26 16 28 C -0.13 -0.29 5.93 30.72 0.18 -0.10 16 29 C 0.09 0.56 6.96 86.45 0.60 1.16 16 30 H 0.06 1.69 6.58 -2.39 -0.02 1.67 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.80 5.97 -2.39 -0.01 1.78 16 33 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.66 7.36 -2.39 -0.02 1.64 16 36 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.07 2.73 7.93 -2.39 -0.02 2.72 16 38 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.06 3.39 6.06 -2.39 -0.01 3.37 16 41 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 2.79 6.34 -2.39 -0.02 2.77 16 43 H 0.41 12.81 6.37 -92.70 -0.59 12.22 16 44 H 0.20 3.98 8.06 -2.91 -0.02 3.96 16 45 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.07 0.33 8.12 -2.38 -0.02 0.31 16 48 H 0.11 -0.04 8.14 -2.38 -0.02 -0.06 16 49 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 50 H 0.07 0.25 8.11 -2.39 -0.02 0.23 16 51 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 52 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -78.18 399.32 3.00 -75.18 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.33 Total: 22.37 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 7.61 Total: 20.80 kcal Atomic # 7 Polarization: -134.13 SS G_CDS: -6.90 Total: -141.03 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.07 Total: -25.49 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -78.18 3.00 -75.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940781234.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.034 kcal (2) G-P(sol) polarization free energy of solvation -78.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds