Wall clock time and date at job start Wed Apr 1 2020 04:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.52111 * 2 1 4 4 C 1.52758 * 109.56365 * 240.04719 * 2 1 3 5 5 N 1.46928 * 109.00696 * 185.55200 * 4 2 1 6 6 C 1.36940 * 120.62942 * 233.58139 * 5 4 2 7 7 H 1.07997 * 119.99487 * 152.22685 * 6 5 4 8 8 C 1.38809 * 120.00020 * 332.22646 * 6 5 4 9 9 N 1.31625 * 120.00314 * 335.02519 * 8 6 5 10 10 Si 1.86803 * 119.99831 * 155.01934 * 8 6 5 11 11 H 1.48499 * 109.47125 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46931 * 120.00189 * 10 8 6 13 13 H 1.48496 * 109.47273 * 240.00296 * 10 8 6 14 14 C 1.46920 * 118.73646 * 53.31210 * 5 4 2 15 15 C 1.53187 * 108.77436 * 306.63846 * 14 5 4 16 16 C 1.53035 * 109.49646 * 120.08231 * 2 1 3 17 17 H 1.08996 * 109.46355 * 61.29677 * 16 2 1 18 18 N 1.46510 * 109.45801 * 301.33541 * 16 2 1 19 19 C 1.34772 * 119.99685 * 154.93534 * 18 16 2 20 20 O 1.21624 * 120.00198 * 0.02562 * 19 18 16 21 21 C 1.47329 * 120.00011 * 179.97438 * 19 18 16 22 22 C 1.36568 * 126.20877 * 179.97438 * 21 19 18 23 23 N 1.34873 * 106.78120 * 179.97438 * 22 21 19 24 24 C 1.36309 * 107.86549 * 0.04851 * 23 22 21 25 25 N 1.29797 * 108.91978 * 359.65292 * 24 23 22 26 26 C 1.51097 * 123.90445 * 179.86017 * 24 23 22 27 27 C 1.53387 * 108.18514 * 344.02947 * 26 24 23 28 28 C 1.53136 * 109.24728 * 48.97732 * 27 26 24 29 29 C 1.46580 * 127.50010 * 180.08650 * 23 22 21 30 30 H 1.08993 * 109.46867 * 299.91856 * 1 2 3 31 31 H 1.09000 * 109.47068 * 59.91710 * 1 2 3 32 32 H 1.08999 * 109.46973 * 179.91494 * 1 2 3 33 33 H 1.09003 * 109.46779 * 180.08211 * 3 2 1 34 34 H 1.09000 * 109.47414 * 300.07927 * 3 2 1 35 35 H 1.08998 * 109.47633 * 60.08447 * 3 2 1 36 36 H 1.09007 * 109.51083 * 65.67088 * 4 2 1 37 37 H 1.08998 * 109.43404 * 305.38690 * 4 2 1 38 38 H 0.96998 * 119.99686 * 354.25090 * 9 8 6 39 39 H 1.08996 * 109.59199 * 66.42825 * 14 5 4 40 40 H 1.09010 * 109.58411 * 186.71583 * 14 5 4 41 41 H 1.09009 * 109.49772 * 174.58793 * 15 14 5 42 42 H 1.09000 * 109.50241 * 294.65145 * 15 14 5 43 43 H 0.96993 * 119.99574 * 334.93301 * 18 16 2 44 44 H 1.07999 * 126.61311 * 359.97438 * 22 21 19 45 45 H 1.08991 * 109.72059 * 103.70758 * 26 24 23 46 46 H 1.09001 * 109.71744 * 224.31537 * 26 24 23 47 47 H 1.09011 * 109.50625 * 168.90637 * 27 26 24 48 48 H 1.08999 * 109.51182 * 288.99377 * 27 26 24 49 49 H 1.08992 * 109.46235 * 50.21909 * 28 27 26 50 50 H 1.09004 * 109.45558 * 170.19054 * 28 27 26 51 51 H 1.09005 * 109.58495 * 282.62579 * 29 23 22 52 52 H 1.09001 * 109.58149 * 43.03650 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0416 -0.7187 -1.2471 5 7 3.5047 -0.8291 -1.1696 6 6 4.2937 -0.3784 -2.1941 7 1 5.2998 -0.0415 -1.9928 8 6 3.8002 -0.3547 -3.4913 9 7 2.8306 -1.1729 -3.8417 10 14 4.5123 0.8386 -4.7397 11 1 5.5841 1.6431 -4.1001 12 1 5.0793 0.0791 -5.8829 13 1 3.4398 1.7418 -5.2288 14 6 4.1053 -1.4267 0.0307 15 6 3.5709 -0.6950 1.2659 16 6 2.0408 -0.7231 1.2483 17 1 1.6968 -1.7572 1.2353 18 7 1.5265 -0.0529 2.4453 19 6 1.3972 -0.7385 3.5983 20 8 1.7079 -1.9135 3.6454 21 6 0.8805 -0.0645 4.8022 22 6 0.6982 -0.6339 6.0301 23 7 0.2117 0.3302 6.8381 24 6 0.0997 1.4735 6.1044 25 7 0.5048 1.2382 4.8939 26 6 -0.4144 2.7825 6.6569 27 6 -1.1324 2.4941 7.9813 28 6 -0.2370 1.6161 8.8601 29 6 -0.1441 0.2114 8.2550 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1314 1.4410 -0.0015 34 1 1.6773 1.9567 -0.8892 35 1 1.6797 1.9558 0.8907 36 1 1.7646 -0.1495 -2.1346 37 1 1.6022 -1.7149 -1.2975 38 1 2.5177 -1.8486 -3.2201 39 1 3.8376 -2.4818 0.0867 40 1 5.1898 -1.3268 -0.0150 41 1 3.9335 -1.1897 2.1671 42 1 3.9165 0.3387 1.2544 43 1 1.2791 0.8842 2.4078 44 1 0.9039 -1.6587 6.3018 45 1 0.4203 3.4613 6.8312 46 1 -1.1120 3.2315 5.9498 47 1 -1.3389 3.4330 8.4954 48 1 -2.0696 1.9747 7.7817 49 1 0.7595 2.0542 8.9154 50 1 -0.6617 1.5524 9.8620 51 1 -1.1069 -0.2911 8.3491 52 1 0.6219 -0.3617 8.7773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940781235.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:01 Heat of formation + Delta-G solvation = 29.258908 kcal Electronic energy + Delta-G solvation = -31544.773110 eV Core-core repulsion = 27544.913753 eV Total energy + Delta-G solvation = -3999.859356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.62741 -39.78500 -38.03198 -36.83533 -34.66364 -33.78953 -32.73795 -32.01540 -30.38784 -29.09108 -28.85133 -26.72379 -26.04262 -25.47533 -24.49717 -23.02490 -22.64041 -21.68589 -20.62587 -19.82260 -19.41912 -18.28860 -17.54330 -17.23733 -16.47541 -16.35217 -15.61640 -14.96411 -14.78458 -14.59190 -14.47722 -14.23389 -14.12520 -13.97573 -13.78837 -13.58473 -13.56284 -13.29128 -13.17177 -12.56719 -12.38057 -12.21497 -11.78135 -11.76576 -11.68434 -11.59372 -11.40505 -11.35877 -10.84131 -10.81716 -10.60214 -10.41850 -10.32003 -10.19704 -10.02154 -9.96143 -9.92988 -9.78249 -9.63444 -9.16811 -8.71672 -8.44037 -8.27352 -6.79181 -5.98967 -3.14210 1.51258 2.27335 2.30629 3.54064 3.55680 3.58798 3.69303 3.71777 3.79843 4.00281 4.06233 4.11432 4.53596 4.65603 4.65824 4.77553 4.80068 5.02181 5.08771 5.14075 5.22393 5.25844 5.28491 5.30205 5.47698 5.49482 5.55942 5.56227 5.64235 5.85908 5.90612 5.99487 6.09801 6.16261 6.25464 6.31274 6.34626 6.44620 6.50776 6.52800 6.69246 6.73887 6.76370 6.83497 6.92341 6.97434 7.04769 7.20530 7.26077 7.60470 7.98668 8.09533 8.57032 8.65624 9.20147 9.92970 10.38322 11.29648 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.002338 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.327957 B =11974.006049 C =12390.611724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.128 4.128 4 C 0.166 3.834 5 N -0.596 5.596 6 C -0.343 4.343 7 H 0.056 0.944 8 C -0.025 4.025 9 N -0.918 5.918 10 Si 1.066 2.934 11 H -0.293 1.293 12 H -0.295 1.295 13 H -0.291 1.291 14 C 0.150 3.850 15 C -0.142 4.142 16 C 0.164 3.836 17 H 0.080 0.920 18 N -0.704 5.704 19 C 0.599 3.401 20 O -0.551 6.551 21 C -0.057 4.057 22 C 0.032 3.968 23 N -0.455 5.455 24 C 0.207 3.793 25 N -0.456 5.456 26 C -0.033 4.033 27 C -0.126 4.126 28 C -0.136 4.136 29 C 0.101 3.899 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.034 0.966 36 H 0.085 0.915 37 H 0.017 0.983 38 H 0.270 0.730 39 H 0.018 0.982 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.404 0.596 44 H 0.187 0.813 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.091 0.909 51 H 0.088 0.912 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 7.643 27.736 30.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C -0.186 4.186 4 C 0.039 3.961 5 N -0.320 5.320 6 C -0.472 4.472 7 H 0.073 0.927 8 C -0.227 4.227 9 N -0.559 5.559 10 Si 0.897 3.103 11 H -0.219 1.219 12 H -0.222 1.222 13 H -0.217 1.217 14 C 0.023 3.977 15 C -0.183 4.183 16 C 0.061 3.939 17 H 0.098 0.902 18 N -0.354 5.354 19 C 0.384 3.616 20 O -0.429 6.429 21 C -0.186 4.186 22 C -0.107 4.107 23 N -0.138 5.138 24 C -0.057 4.057 25 N -0.176 5.176 26 C -0.072 4.072 27 C -0.164 4.164 28 C -0.173 4.173 29 C -0.021 4.021 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.240 0.760 44 H 0.204 0.796 45 H 0.109 0.891 46 H 0.116 0.884 47 H 0.102 0.898 48 H 0.090 0.910 49 H 0.096 0.904 50 H 0.109 0.891 51 H 0.106 0.894 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.586 7.914 25.639 28.493 hybrid contribution 0.068 -0.870 2.325 2.483 sum -9.518 7.044 27.964 30.367 Atomic orbital electron populations 1.21788 0.95220 1.01332 1.01057 1.21332 0.94560 0.96916 0.96448 1.21754 1.02627 0.94470 0.99699 1.20909 0.84111 0.96467 0.94629 1.44113 1.01093 1.69766 1.16988 1.19990 0.99012 1.40570 0.87656 0.92667 1.25776 0.99738 1.00957 0.96203 1.70713 1.30768 1.16835 1.37544 0.83517 0.75356 0.75966 0.75507 1.21890 1.22236 1.21738 1.20863 0.96740 0.94022 0.86060 1.22436 0.94859 1.01678 0.99286 1.20968 0.93774 0.96652 0.82542 0.90206 1.46089 1.64726 1.14870 1.09706 1.16899 0.77379 0.85461 0.81816 1.90781 1.51764 1.15574 1.84770 1.20759 1.11723 0.91251 0.94909 1.22427 1.02143 0.95588 0.90524 1.45309 1.47925 1.09900 1.10679 1.23498 1.04652 0.90211 0.87319 1.70391 1.15298 1.14559 1.17327 1.20237 1.00735 0.89838 0.96419 1.21685 0.98702 1.00949 0.95076 1.21903 1.01942 0.93549 0.99937 1.22085 1.02435 0.99652 0.77911 0.93331 0.92549 0.93140 0.91066 0.92878 0.94677 0.89707 0.96534 0.91943 0.96448 0.92500 0.92687 0.91743 0.75966 0.79553 0.89072 0.88420 0.89758 0.91005 0.90423 0.89081 0.89398 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.31 37.16 0.31 -2.01 16 2 C -0.09 -1.73 0.56 -154.61 -0.09 -1.81 16 3 C -0.13 -2.37 7.82 37.16 0.29 -2.08 16 4 C 0.17 3.90 3.33 -3.93 -0.01 3.89 16 5 N -0.60 -15.04 2.30 -172.59 -0.40 -15.44 16 6 C -0.34 -9.58 9.49 -15.06 -0.14 -9.72 16 7 H 0.06 1.56 7.94 -52.49 -0.42 1.15 16 8 C -0.02 -0.71 4.68 -17.43 -0.08 -0.79 16 9 N -0.92 -27.66 12.41 55.49 0.69 -26.97 16 10 Si 1.07 25.62 29.99 -169.99 -5.10 20.53 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.15 3.36 6.52 -3.72 -0.02 3.33 16 15 C -0.14 -2.80 5.31 -26.61 -0.14 -2.94 16 16 C 0.16 3.11 1.57 -67.88 -0.11 3.00 16 17 H 0.08 1.67 7.57 -51.93 -0.39 1.28 16 18 N -0.70 -11.96 4.29 -54.87 -0.24 -12.19 16 19 C 0.60 10.47 7.78 -12.56 -0.10 10.37 16 20 O -0.55 -11.05 16.54 5.26 0.09 -10.97 16 21 C -0.06 -0.85 6.98 -82.97 -0.58 -1.43 16 22 C 0.03 0.37 11.32 -16.82 -0.19 0.18 16 23 N -0.46 -4.14 3.11 -113.43 -0.35 -4.50 16 24 C 0.21 2.16 7.64 -154.63 -1.18 0.98 16 25 N -0.46 -6.33 11.00 -7.01 -0.08 -6.41 16 26 C -0.03 -0.21 6.33 -27.49 -0.17 -0.38 16 27 C -0.13 -0.45 5.95 -26.46 -0.16 -0.61 16 28 C -0.14 -0.40 5.93 -26.54 -0.16 -0.56 16 29 C 0.10 0.46 6.96 -3.88 -0.03 0.43 16 30 H 0.05 0.75 7.36 -51.93 -0.38 0.37 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.46 5.97 -51.93 -0.31 1.15 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.03 0.56 6.58 -51.93 -0.34 0.22 16 36 H 0.08 2.23 6.30 -51.93 -0.33 1.90 16 37 H 0.02 0.41 7.87 -51.93 -0.41 0.00 16 38 H 0.27 8.23 6.71 -40.82 -0.27 7.95 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 1.26 7.93 -51.92 -0.41 0.85 16 41 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 42 H 0.06 1.27 6.34 -51.93 -0.33 0.94 16 43 H 0.40 6.48 6.37 -40.82 -0.26 6.22 16 44 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.16 8.14 -51.92 -0.42 -0.26 16 48 H 0.07 0.28 8.12 -51.93 -0.42 -0.15 16 49 H 0.08 0.27 8.11 -51.93 -0.42 -0.15 16 50 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 51 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 52 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -34.35 398.25 -10.51 -44.86 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.57 Total: 5.23 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.56 Total: -0.14 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.37 Total: -65.51 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.10 Total: 20.53 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.35 -10.51 -44.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940781235.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.121 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds