Wall clock time and date at job start Wed Apr 1 2020 04:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.52111 * 2 1 4 4 C 1.52758 * 109.56365 * 240.04719 * 2 1 3 5 5 N 1.46928 * 109.00696 * 185.55200 * 4 2 1 6 6 C 1.36940 * 120.62942 * 233.58139 * 5 4 2 7 7 H 1.07997 * 119.99487 * 152.22685 * 6 5 4 8 8 C 1.38809 * 120.00020 * 332.22646 * 6 5 4 9 9 N 1.31625 * 120.00314 * 335.02519 * 8 6 5 10 10 Si 1.86803 * 119.99831 * 155.01934 * 8 6 5 11 11 H 1.48499 * 109.47125 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46931 * 120.00189 * 10 8 6 13 13 H 1.48496 * 109.47273 * 240.00296 * 10 8 6 14 14 C 1.46920 * 118.73646 * 53.31210 * 5 4 2 15 15 C 1.53187 * 108.77436 * 306.63846 * 14 5 4 16 16 C 1.53035 * 109.49646 * 120.08231 * 2 1 3 17 17 H 1.08996 * 109.46355 * 61.29677 * 16 2 1 18 18 N 1.46510 * 109.45801 * 301.33541 * 16 2 1 19 19 C 1.34772 * 119.99685 * 154.93534 * 18 16 2 20 20 O 1.21624 * 120.00198 * 0.02562 * 19 18 16 21 21 C 1.47329 * 120.00011 * 179.97438 * 19 18 16 22 22 C 1.36568 * 126.20877 * 179.97438 * 21 19 18 23 23 N 1.34873 * 106.78120 * 179.97438 * 22 21 19 24 24 C 1.36309 * 107.86549 * 0.04851 * 23 22 21 25 25 N 1.29797 * 108.91978 * 359.65292 * 24 23 22 26 26 C 1.51097 * 123.90445 * 179.86017 * 24 23 22 27 27 C 1.53387 * 108.18514 * 344.02947 * 26 24 23 28 28 C 1.53136 * 109.24728 * 48.97732 * 27 26 24 29 29 C 1.46580 * 127.50010 * 180.08650 * 23 22 21 30 30 H 1.08993 * 109.46867 * 299.91856 * 1 2 3 31 31 H 1.09000 * 109.47068 * 59.91710 * 1 2 3 32 32 H 1.08999 * 109.46973 * 179.91494 * 1 2 3 33 33 H 1.09003 * 109.46779 * 180.08211 * 3 2 1 34 34 H 1.09000 * 109.47414 * 300.07927 * 3 2 1 35 35 H 1.08998 * 109.47633 * 60.08447 * 3 2 1 36 36 H 1.09007 * 109.51083 * 65.67088 * 4 2 1 37 37 H 1.08998 * 109.43404 * 305.38690 * 4 2 1 38 38 H 0.96998 * 119.99686 * 354.25090 * 9 8 6 39 39 H 1.08996 * 109.59199 * 66.42825 * 14 5 4 40 40 H 1.09010 * 109.58411 * 186.71583 * 14 5 4 41 41 H 1.09009 * 109.49772 * 174.58793 * 15 14 5 42 42 H 1.09000 * 109.50241 * 294.65145 * 15 14 5 43 43 H 0.96993 * 119.99574 * 334.93301 * 18 16 2 44 44 H 1.07999 * 126.61311 * 359.97438 * 22 21 19 45 45 H 1.08991 * 109.72059 * 103.70758 * 26 24 23 46 46 H 1.09001 * 109.71744 * 224.31537 * 26 24 23 47 47 H 1.09011 * 109.50625 * 168.90637 * 27 26 24 48 48 H 1.08999 * 109.51182 * 288.99377 * 27 26 24 49 49 H 1.08992 * 109.46235 * 50.21909 * 28 27 26 50 50 H 1.09004 * 109.45558 * 170.19054 * 28 27 26 51 51 H 1.09005 * 109.58495 * 282.62579 * 29 23 22 52 52 H 1.09001 * 109.58149 * 43.03650 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0416 -0.7187 -1.2471 5 7 3.5047 -0.8291 -1.1696 6 6 4.2937 -0.3784 -2.1941 7 1 5.2998 -0.0415 -1.9928 8 6 3.8002 -0.3547 -3.4913 9 7 2.8306 -1.1729 -3.8417 10 14 4.5123 0.8386 -4.7397 11 1 5.5841 1.6431 -4.1001 12 1 5.0793 0.0791 -5.8829 13 1 3.4398 1.7418 -5.2288 14 6 4.1053 -1.4267 0.0307 15 6 3.5709 -0.6950 1.2659 16 6 2.0408 -0.7231 1.2483 17 1 1.6968 -1.7572 1.2353 18 7 1.5265 -0.0529 2.4453 19 6 1.3972 -0.7385 3.5983 20 8 1.7079 -1.9135 3.6454 21 6 0.8805 -0.0645 4.8022 22 6 0.6982 -0.6339 6.0301 23 7 0.2117 0.3302 6.8381 24 6 0.0997 1.4735 6.1044 25 7 0.5048 1.2382 4.8939 26 6 -0.4144 2.7825 6.6569 27 6 -1.1324 2.4941 7.9813 28 6 -0.2370 1.6161 8.8601 29 6 -0.1441 0.2114 8.2550 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1314 1.4410 -0.0015 34 1 1.6773 1.9567 -0.8892 35 1 1.6797 1.9558 0.8907 36 1 1.7646 -0.1495 -2.1346 37 1 1.6022 -1.7149 -1.2975 38 1 2.5177 -1.8486 -3.2201 39 1 3.8376 -2.4818 0.0867 40 1 5.1898 -1.3268 -0.0150 41 1 3.9335 -1.1897 2.1671 42 1 3.9165 0.3387 1.2544 43 1 1.2791 0.8842 2.4078 44 1 0.9039 -1.6587 6.3018 45 1 0.4203 3.4613 6.8312 46 1 -1.1120 3.2315 5.9498 47 1 -1.3389 3.4330 8.4954 48 1 -2.0696 1.9747 7.7817 49 1 0.7595 2.0542 8.9154 50 1 -0.6617 1.5524 9.8620 51 1 -1.1069 -0.2911 8.3491 52 1 0.6219 -0.3617 8.7773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940781235.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:59 Heat of formation + Delta-G solvation = 8.900961 kcal Electronic energy + Delta-G solvation = -31545.655897 eV Core-core repulsion = 27544.913753 eV Total energy + Delta-G solvation = -4000.742143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.43153 -41.31695 -39.54387 -37.37520 -36.49228 -34.55766 -34.20199 -33.89601 -31.44472 -30.54665 -29.60552 -28.26583 -27.79609 -26.95472 -25.47627 -24.36819 -23.23254 -23.06470 -22.45816 -21.11912 -19.98561 -19.74786 -19.42289 -18.49226 -17.35543 -17.25154 -16.95993 -16.33609 -16.03781 -15.95706 -15.47674 -15.42776 -15.20929 -15.11185 -15.03220 -14.89653 -14.81094 -14.59160 -14.22888 -14.10020 -14.00560 -13.61962 -13.01919 -12.95173 -12.79597 -12.69615 -12.53643 -12.46679 -12.15419 -12.09184 -11.98542 -11.91084 -11.87482 -11.81073 -11.71208 -11.41500 -11.35730 -11.20437 -10.99172 -10.70789 -10.45172 -10.06461 -9.47491 -8.92207 -8.22583 -5.36844 0.53148 1.35202 1.59846 1.62999 1.67587 1.83748 2.25847 2.49222 2.66746 3.13949 3.22833 3.49994 3.56759 3.61115 3.63997 3.80978 3.86231 3.96194 4.01013 4.08851 4.23122 4.31202 4.33492 4.39371 4.44533 4.47919 4.50460 4.54457 4.70887 4.74733 4.81268 4.86157 4.87525 4.92170 4.92980 4.96931 4.99178 5.08265 5.09673 5.11926 5.14647 5.21237 5.26350 5.31259 5.34803 5.42498 5.50894 5.57625 5.86965 6.05704 6.40941 6.50648 6.86197 7.05854 7.23425 7.79243 8.24188 9.02805 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.002338 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.327957 B =11974.006049 C =12390.611724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 C -0.120 4.120 4 C 0.175 3.825 5 N -0.610 5.610 6 C -0.346 4.346 7 H 0.050 0.950 8 C -0.074 4.074 9 N -0.943 5.943 10 Si 1.116 2.884 11 H -0.274 1.274 12 H -0.293 1.293 13 H -0.286 1.286 14 C 0.148 3.852 15 C -0.127 4.127 16 C 0.176 3.824 17 H 0.057 0.943 18 N -0.697 5.697 19 C 0.598 3.402 20 O -0.585 6.585 21 C -0.097 4.097 22 C 0.043 3.957 23 N -0.447 5.447 24 C 0.210 3.790 25 N -0.490 5.490 26 C -0.035 4.035 27 C -0.121 4.121 28 C -0.131 4.131 29 C 0.090 3.910 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.056 0.944 37 H -0.004 1.004 38 H 0.253 0.747 39 H 0.008 0.992 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.411 0.589 44 H 0.201 0.799 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.119 0.881 51 H 0.104 0.896 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.647 9.841 30.906 34.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.083 4.083 3 C -0.177 4.177 4 C 0.049 3.951 5 N -0.333 5.333 6 C -0.476 4.476 7 H 0.068 0.932 8 C -0.271 4.271 9 N -0.585 5.585 10 Si 0.941 3.059 11 H -0.199 1.199 12 H -0.220 1.220 13 H -0.212 1.212 14 C 0.022 3.978 15 C -0.167 4.167 16 C 0.072 3.928 17 H 0.075 0.925 18 N -0.346 5.346 19 C 0.386 3.614 20 O -0.466 6.466 21 C -0.225 4.225 22 C -0.098 4.098 23 N -0.128 5.128 24 C -0.055 4.055 25 N -0.210 5.210 26 C -0.074 4.074 27 C -0.159 4.159 28 C -0.169 4.169 29 C -0.030 4.030 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.013 0.987 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.248 0.752 44 H 0.218 0.782 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.125 0.875 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.137 0.863 51 H 0.122 0.878 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.536 10.137 28.873 32.363 hybrid contribution 0.348 -1.599 1.487 2.211 sum -10.188 8.538 30.359 33.142 Atomic orbital electron populations 1.21726 0.93262 1.01483 1.02235 1.21152 0.96046 0.96878 0.94255 1.21659 1.01228 0.93853 1.00964 1.20733 0.83340 0.95377 0.95679 1.44295 1.01665 1.70172 1.17205 1.20200 0.99186 1.39760 0.88458 0.93193 1.27127 0.99790 1.01819 0.98314 1.70842 1.32488 1.17802 1.37359 0.82844 0.75308 0.74220 0.73492 1.19895 1.22047 1.21193 1.20930 0.96753 0.93774 0.86353 1.22238 0.95400 1.01339 0.97750 1.20616 0.93141 0.95647 0.83435 0.92456 1.45874 1.64761 1.14972 1.09036 1.17294 0.76554 0.85109 0.82457 1.90750 1.53376 1.17057 1.85402 1.20460 1.14840 0.92408 0.94840 1.22637 1.00727 0.96478 0.89994 1.45611 1.46322 1.08735 1.12159 1.24279 1.02870 0.91754 0.86631 1.70307 1.16907 1.14196 1.19560 1.20483 1.01274 0.87852 0.97816 1.21700 0.98250 1.02248 0.93699 1.21945 1.01871 0.92084 1.00974 1.22554 1.03743 1.01447 0.75272 0.91292 0.92116 0.93592 0.93070 0.93250 0.91708 0.92522 0.98653 0.93696 0.97371 0.92559 0.92297 0.91342 0.75174 0.78195 0.88171 0.88297 0.87527 0.91087 0.90795 0.86270 0.87794 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 8.31 71.98 0.60 -3.77 16 2 C -0.08 -3.15 0.56 -52.25 -0.03 -3.17 16 3 C -0.12 -4.36 7.82 71.98 0.56 -3.80 16 4 C 0.18 8.60 3.33 86.22 0.29 8.89 16 5 N -0.61 -31.79 2.30 -699.94 -1.61 -33.39 16 6 C -0.35 -19.76 9.49 84.03 0.80 -18.96 16 7 H 0.05 2.87 7.94 -2.91 -0.02 2.84 16 8 C -0.07 -4.30 4.68 84.86 0.40 -3.90 16 9 N -0.94 -58.55 12.41 21.65 0.27 -58.28 16 10 Si 1.12 52.06 29.99 68.60 2.06 54.12 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 14 C 0.15 6.84 6.52 86.36 0.56 7.41 16 15 C -0.13 -5.08 5.31 30.67 0.16 -4.92 16 16 C 0.18 6.78 1.57 45.02 0.07 6.86 16 17 H 0.06 2.49 7.57 -2.39 -0.02 2.47 16 18 N -0.70 -23.55 4.29 -445.75 -1.91 -25.46 16 19 C 0.60 21.04 7.78 86.64 0.67 21.72 16 20 O -0.58 -23.95 16.54 -4.11 -0.07 -24.02 16 21 C -0.10 -2.85 6.98 40.52 0.28 -2.57 16 22 C 0.04 0.96 11.32 83.84 0.95 1.91 16 23 N -0.45 -7.10 3.11 -512.77 -1.60 -8.70 16 24 C 0.21 3.98 7.64 138.05 1.05 5.03 16 25 N -0.49 -13.11 11.00 -176.08 -1.94 -15.04 16 26 C -0.04 -0.35 6.33 30.10 0.19 -0.16 16 27 C -0.12 -0.40 5.95 30.77 0.18 -0.22 16 28 C -0.13 -0.25 5.93 30.72 0.18 -0.07 16 29 C 0.09 0.50 6.96 86.44 0.60 1.10 16 30 H 0.07 2.05 7.36 -2.39 -0.02 2.04 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 2.07 5.97 -2.39 -0.01 2.06 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.96 6.58 -2.39 -0.02 1.94 16 36 H 0.06 3.10 6.30 -2.38 -0.02 3.08 16 37 H 0.00 -0.23 7.87 -2.39 -0.02 -0.25 16 38 H 0.25 16.18 6.71 -92.71 -0.62 15.56 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.06 2.56 7.93 -2.38 -0.02 2.54 16 41 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 42 H 0.07 2.69 6.34 -2.39 -0.02 2.68 16 43 H 0.41 12.80 6.37 -92.71 -0.59 12.21 16 44 H 0.20 3.71 8.06 -2.91 -0.02 3.69 16 45 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 47 H 0.11 -0.06 8.14 -2.38 -0.02 -0.08 16 48 H 0.07 0.29 8.12 -2.39 -0.02 0.27 16 49 H 0.07 0.25 8.11 -2.39 -0.02 0.23 16 50 H 0.12 -0.36 8.14 -2.38 -0.02 -0.38 16 51 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 52 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -77.61 398.25 3.21 -74.40 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.47 Total: 25.01 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 7.53 Total: 11.37 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -6.78 Total: -140.88 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.07 Total: -24.02 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.06 Total: 54.12 kcal Total: -77.61 3.21 -74.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940781235.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.303 kcal (2) G-P(sol) polarization free energy of solvation -77.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds