Wall clock time and date at job start Wed Apr 1 2020 04:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34254 * 125.75793 * 2 1 4 4 C 1.38046 * 107.42137 * 179.97438 * 3 2 1 5 5 C 1.47429 * 126.41640 * 179.97438 * 4 3 2 6 6 O 1.21598 * 119.99916 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99742 * 0.02562 * 5 4 3 8 8 C 1.46504 * 119.99734 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.45712 * 34.97578 * 8 7 5 10 10 C 1.53042 * 109.45893 * 275.00547 * 8 7 5 11 11 C 1.53191 * 109.30934 * 178.62923 * 10 8 7 12 12 N 1.46933 * 108.78000 * 54.63332 * 11 10 8 13 13 C 1.36934 * 120.63168 * 126.36332 * 12 11 10 14 14 H 1.08001 * 120.00050 * 332.51150 * 13 12 11 15 15 C 1.38809 * 119.99751 * 152.50359 * 13 12 11 16 16 N 1.31614 * 120.00350 * 335.03508 * 15 13 12 17 17 Si 1.86804 * 119.99809 * 155.03104 * 15 13 12 18 18 H 1.48500 * 109.46888 * 60.00458 * 17 15 13 19 19 H 1.48503 * 109.46987 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47223 * 300.00100 * 17 15 13 21 21 C 1.46928 * 118.73761 * 306.64597 * 12 11 10 22 22 C 1.52768 * 109.00701 * 53.30366 * 21 12 11 23 23 C 1.52996 * 109.56311 * 185.55450 * 22 21 12 24 24 C 1.52999 * 109.35774 * 65.50170 * 22 21 12 25 25 C 1.41289 * 107.16972 * 0.23622 * 4 3 2 26 26 C 1.50694 * 125.98692 * 179.73705 * 25 4 3 27 27 C 1.53005 * 117.49602 * 188.62430 * 26 25 4 28 28 C 1.53005 * 60.00126 * 252.51320 * 27 26 25 29 29 N 1.30455 * 108.02281 * 359.59400 * 25 4 3 30 30 H 1.09003 * 109.47053 * 90.00548 * 1 2 3 31 31 H 1.09000 * 109.47303 * 210.00379 * 1 2 3 32 32 H 1.08999 * 109.47687 * 330.00774 * 1 2 3 33 33 H 1.08007 * 126.28849 * 359.97438 * 3 2 1 34 34 H 0.97000 * 120.00428 * 0.02562 * 7 5 4 35 35 H 1.08992 * 109.49955 * 58.67978 * 10 8 7 36 36 H 1.08997 * 109.49762 * 298.57303 * 10 8 7 37 37 H 1.09001 * 109.59242 * 294.84995 * 11 10 8 38 38 H 1.08999 * 109.70796 * 174.48794 * 11 10 8 39 39 H 0.97008 * 120.00026 * 354.25254 * 16 15 13 40 40 H 1.08992 * 109.58881 * 173.13939 * 21 12 11 41 41 H 1.08996 * 109.58116 * 293.56697 * 21 12 11 42 42 H 1.09002 * 109.47461 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47181 * 299.96595 * 23 22 21 44 44 H 1.08999 * 109.47728 * 59.96496 * 23 22 21 45 45 H 1.08995 * 109.47216 * 300.15416 * 24 22 21 46 46 H 1.08996 * 109.47442 * 60.15530 * 24 22 21 47 47 H 1.09007 * 109.47167 * 180.15838 * 24 22 21 48 48 H 1.08992 * 115.55565 * 334.33100 * 26 25 4 49 49 H 1.08994 * 117.49932 * 0.02562 * 27 26 25 50 50 H 1.08996 * 117.49964 * 145.02484 * 27 26 25 51 51 H 1.09004 * 117.49549 * 252.51611 * 28 27 26 52 52 H 1.08996 * 117.51932 * 107.48138 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0895 0.0000 4 6 3.5598 0.6552 0.0006 5 6 4.7638 1.5060 0.0003 6 8 5.8681 0.9968 0.0004 7 7 4.6405 2.8481 -0.0002 8 6 5.8370 3.6936 -0.0010 9 1 6.6192 3.2152 -0.5904 10 6 6.3267 3.8855 1.4362 11 6 7.5971 4.7415 1.4284 12 7 7.3189 5.9945 0.7132 13 6 7.5754 7.2047 1.3003 14 1 7.5520 7.2989 2.3760 15 6 7.8658 8.3104 0.5130 16 7 8.3728 8.1465 -0.6905 17 14 7.5368 10.0311 1.1614 18 1 8.3281 10.2537 2.3982 19 1 7.9295 11.0303 0.1354 20 1 6.0907 10.1773 1.4659 21 6 6.7542 5.9244 -0.6414 22 6 5.4983 5.0551 -0.6125 23 6 4.9778 4.8594 -2.0379 24 6 4.4251 5.7424 0.2340 25 6 3.5311 -0.7574 -0.0046 26 6 4.7321 -1.6675 -0.0115 27 6 4.4841 -3.1629 -0.2199 28 6 4.8887 -2.6395 1.1597 29 7 2.2826 -1.1357 0.0007 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.9165 2.1169 -0.0004 34 1 3.7596 3.2543 0.0001 35 1 6.5454 2.9139 1.8788 36 1 5.5543 4.3863 2.0199 37 1 8.3980 4.2023 0.9225 38 1 7.8966 4.9642 2.4525 39 1 8.6213 7.2598 -0.9955 40 1 6.4952 6.9269 -0.9817 41 1 7.4849 5.4835 -1.3194 42 1 4.0821 4.2386 -2.0156 43 1 4.7368 5.8293 -2.4730 44 1 5.7435 4.3711 -2.6406 45 1 4.7973 5.8826 1.2487 46 1 4.1843 6.7120 -0.2019 47 1 3.5289 5.1222 0.2581 48 1 5.6409 -1.2435 -0.4386 49 1 3.4523 -3.4882 -0.3524 50 1 5.2297 -3.7229 -0.7843 51 1 5.9005 -2.8551 1.5029 52 1 4.1232 -2.6203 1.9354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940782992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:31 Heat of formation + Delta-G solvation = 82.730821 kcal Electronic energy + Delta-G solvation = -31729.188157 eV Core-core repulsion = 27731.647516 eV Total energy + Delta-G solvation = -3997.540640 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.66491 -39.77742 -37.95379 -37.22571 -34.72534 -33.31205 -32.91226 -32.14013 -30.60495 -29.00603 -27.56985 -26.85505 -26.10076 -25.03191 -23.52432 -22.70339 -22.44422 -21.82336 -20.71843 -19.96133 -19.53299 -18.46668 -17.58878 -17.16694 -16.25800 -15.97753 -15.56124 -15.51343 -14.83441 -14.59147 -14.49894 -14.28361 -13.79687 -13.70474 -13.63476 -13.35429 -13.29218 -13.05882 -12.99686 -12.61502 -12.39738 -12.02092 -11.88692 -11.65333 -11.54219 -11.46331 -11.23943 -10.96379 -10.92136 -10.90418 -10.66721 -10.49295 -10.39263 -10.29378 -10.04447 -10.02419 -9.76155 -9.59093 -9.41660 -9.22300 -8.87739 -8.55973 -8.34076 -6.85567 -6.04731 -3.20329 1.30686 1.96059 2.05129 3.46243 3.50355 3.51818 3.52333 3.70673 3.88574 4.04938 4.26654 4.49056 4.60463 4.69143 4.75594 4.91059 4.94895 4.98370 5.07245 5.17091 5.24037 5.29701 5.38550 5.46567 5.51721 5.53374 5.56089 5.72353 5.82353 5.86402 5.99621 6.01857 6.02308 6.11912 6.16585 6.23843 6.27360 6.34019 6.41275 6.45333 6.51907 6.59212 6.61374 6.76859 6.83933 6.88280 6.95956 7.11423 7.18096 7.35858 7.80936 8.02707 8.51913 8.59633 9.13893 9.86868 10.31922 11.23834 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018770 B = 0.002648 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.357227 B =10573.294986 C =11332.086937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.363 5.363 3 C 0.096 3.904 4 C -0.275 4.275 5 C 0.590 3.410 6 O -0.541 6.541 7 N -0.719 5.719 8 C 0.167 3.833 9 H 0.081 0.919 10 C -0.142 4.142 11 C 0.149 3.851 12 N -0.596 5.596 13 C -0.346 4.346 14 H 0.055 0.945 15 C -0.024 4.024 16 N -0.916 5.916 17 Si 1.061 2.939 18 H -0.293 1.293 19 H -0.286 1.286 20 H -0.294 1.294 21 C 0.166 3.834 22 C -0.092 4.092 23 C -0.135 4.135 24 C -0.127 4.127 25 C 0.163 3.837 26 C -0.080 4.080 27 C -0.170 4.170 28 C -0.159 4.159 29 N -0.301 5.301 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.182 0.818 34 H 0.391 0.609 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.018 0.982 38 H 0.056 0.944 39 H 0.269 0.731 40 H 0.084 0.916 41 H 0.017 0.983 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.030 0.970 48 H 0.140 0.860 49 H 0.099 0.901 50 H 0.099 0.901 51 H 0.101 0.899 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.036 -16.677 0.254 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.141 5.141 3 C -0.055 4.055 4 C -0.290 4.290 5 C 0.377 3.623 6 O -0.419 6.419 7 N -0.370 5.370 8 C 0.063 3.937 9 H 0.099 0.901 10 C -0.182 4.182 11 C 0.023 3.977 12 N -0.319 5.319 13 C -0.475 4.475 14 H 0.073 0.927 15 C -0.226 4.226 16 N -0.556 5.556 17 Si 0.891 3.109 18 H -0.221 1.221 19 H -0.212 1.212 20 H -0.221 1.221 21 C 0.039 3.961 22 C -0.094 4.094 23 C -0.193 4.193 24 C -0.184 4.184 25 C -0.004 4.004 26 C -0.100 4.100 27 C -0.207 4.207 28 C -0.197 4.197 29 N -0.123 5.123 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.199 0.801 34 H 0.225 0.775 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.035 0.965 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.158 0.842 49 H 0.117 0.883 50 H 0.117 0.883 51 H 0.120 0.880 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.173 -16.363 -0.122 23.721 hybrid contribution -0.208 -0.606 0.474 0.797 sum -17.381 -16.969 0.352 24.293 Atomic orbital electron populations 1.21976 0.73560 1.04927 1.03852 1.48234 1.06979 1.03761 1.55105 1.23078 0.90482 0.93723 0.98266 1.20321 0.92775 0.93820 1.22127 1.17209 0.87480 0.81652 0.75955 1.90730 1.26727 1.73710 1.50740 1.46128 1.10160 1.05413 1.75270 1.20928 0.86232 0.89446 0.97083 0.90069 1.22427 1.00161 0.99693 0.95940 1.20868 0.92923 0.87307 0.96634 1.44103 1.71868 1.01345 1.14615 1.19939 1.47604 0.87312 0.92614 0.92704 1.25775 0.97018 1.02864 0.96900 1.70777 1.38086 1.26074 1.20695 0.83576 0.76075 0.76173 0.75050 1.22056 1.21165 1.22138 1.20893 0.89658 0.98505 0.87007 1.21352 0.99142 0.94593 0.94316 1.21780 1.00134 1.01142 0.96248 1.21748 0.95793 0.99149 1.01724 1.21428 0.91902 0.91848 0.95207 1.20531 0.95409 0.88940 1.05122 1.23003 1.02987 0.95087 0.99660 1.22948 1.02973 1.02183 0.91605 1.77112 1.01228 1.07103 1.26825 0.90248 0.88942 0.89039 0.80118 0.77473 0.92547 0.91887 0.96414 0.92517 0.91983 0.89773 0.96513 0.93618 0.92559 0.92986 0.90956 0.92845 0.95137 0.84199 0.88298 0.88307 0.88017 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 11.44 59.84 0.68 1.14 16 2 N -0.36 -3.45 3.98 -67.60 -0.27 -3.72 16 3 C 0.10 0.92 10.99 -16.56 -0.18 0.74 16 4 C -0.28 -3.63 6.13 -105.07 -0.64 -4.27 16 5 C 0.59 9.08 7.78 -12.52 -0.10 8.98 16 6 O -0.54 -10.09 14.66 5.28 0.08 -10.01 16 7 N -0.72 -10.09 4.28 -54.84 -0.23 -10.33 16 8 C 0.17 2.84 1.57 -67.89 -0.11 2.73 16 9 H 0.08 1.58 7.57 -51.93 -0.39 1.19 16 10 C -0.14 -2.58 5.31 -26.61 -0.14 -2.72 16 11 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 12 N -0.60 -14.39 2.30 -172.58 -0.40 -14.79 16 13 C -0.35 -9.34 9.49 -15.06 -0.14 -9.48 16 14 H 0.06 1.50 7.94 -52.49 -0.42 1.08 16 15 C -0.02 -0.65 4.68 -17.43 -0.08 -0.73 16 16 N -0.92 -26.91 12.41 55.49 0.69 -26.22 16 17 Si 1.06 24.76 29.99 -169.99 -5.10 19.66 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.17 3.71 3.33 -3.93 -0.01 3.69 16 22 C -0.09 -1.59 0.56 -154.61 -0.09 -1.67 16 23 C -0.14 -2.03 8.31 37.16 0.31 -1.73 16 24 C -0.13 -2.07 7.82 37.16 0.29 -1.78 16 25 C 0.16 2.20 6.79 -82.02 -0.56 1.64 16 26 C -0.08 -1.01 5.65 -91.77 -0.52 -1.53 16 27 C -0.17 -1.72 10.14 -26.73 -0.27 -1.99 16 28 C -0.16 -1.69 10.23 -26.72 -0.27 -1.97 16 29 N -0.30 -3.75 12.08 33.89 0.41 -3.34 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.18 1.05 7.46 -52.48 -0.39 0.66 16 34 H 0.39 4.46 5.58 -40.82 -0.23 4.23 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.13 6.34 -51.93 -0.33 0.80 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 39 H 0.27 8.01 6.71 -40.82 -0.27 7.73 16 40 H 0.08 2.11 6.30 -51.93 -0.33 1.79 16 41 H 0.02 0.40 7.87 -51.93 -0.41 -0.01 16 42 H 0.04 0.58 7.36 -51.93 -0.38 0.20 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.03 0.38 6.58 -51.93 -0.34 0.04 16 48 H 0.14 1.98 6.73 -51.93 -0.35 1.63 16 49 H 0.10 1.02 7.90 -51.93 -0.41 0.60 16 50 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 52 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 405.58 15.07 6.11 6.11 Total: -1.00 -33.45 405.58 -8.99 -42.44 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.42 Total: 5.97 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.86 Total: -5.79 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.20 Total: -58.39 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.10 Total: 19.66 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.45 -8.99 -42.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940782992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.167 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds