Wall clock time and date at job start Wed Apr 1 2020 04:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34254 * 125.75793 * 2 1 4 4 C 1.38046 * 107.42137 * 179.97438 * 3 2 1 5 5 C 1.47429 * 126.41640 * 179.97438 * 4 3 2 6 6 O 1.21598 * 119.99916 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99742 * 0.02562 * 5 4 3 8 8 C 1.46504 * 119.99734 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.45712 * 34.97578 * 8 7 5 10 10 C 1.53042 * 109.45893 * 275.00547 * 8 7 5 11 11 C 1.53191 * 109.30934 * 178.62923 * 10 8 7 12 12 N 1.46933 * 108.78000 * 54.63332 * 11 10 8 13 13 C 1.36934 * 120.63168 * 126.36332 * 12 11 10 14 14 H 1.08001 * 120.00050 * 332.51150 * 13 12 11 15 15 C 1.38809 * 119.99751 * 152.50359 * 13 12 11 16 16 N 1.31614 * 120.00350 * 335.03508 * 15 13 12 17 17 Si 1.86804 * 119.99809 * 155.03104 * 15 13 12 18 18 H 1.48500 * 109.46888 * 60.00458 * 17 15 13 19 19 H 1.48503 * 109.46987 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47223 * 300.00100 * 17 15 13 21 21 C 1.46928 * 118.73761 * 306.64597 * 12 11 10 22 22 C 1.52768 * 109.00701 * 53.30366 * 21 12 11 23 23 C 1.52996 * 109.56311 * 185.55450 * 22 21 12 24 24 C 1.52999 * 109.35774 * 65.50170 * 22 21 12 25 25 C 1.41289 * 107.16972 * 0.23622 * 4 3 2 26 26 C 1.50694 * 125.98692 * 179.73705 * 25 4 3 27 27 C 1.53005 * 117.49602 * 188.62430 * 26 25 4 28 28 C 1.53005 * 60.00126 * 252.51320 * 27 26 25 29 29 N 1.30455 * 108.02281 * 359.59400 * 25 4 3 30 30 H 1.09003 * 109.47053 * 90.00548 * 1 2 3 31 31 H 1.09000 * 109.47303 * 210.00379 * 1 2 3 32 32 H 1.08999 * 109.47687 * 330.00774 * 1 2 3 33 33 H 1.08007 * 126.28849 * 359.97438 * 3 2 1 34 34 H 0.97000 * 120.00428 * 0.02562 * 7 5 4 35 35 H 1.08992 * 109.49955 * 58.67978 * 10 8 7 36 36 H 1.08997 * 109.49762 * 298.57303 * 10 8 7 37 37 H 1.09001 * 109.59242 * 294.84995 * 11 10 8 38 38 H 1.08999 * 109.70796 * 174.48794 * 11 10 8 39 39 H 0.97008 * 120.00026 * 354.25254 * 16 15 13 40 40 H 1.08992 * 109.58881 * 173.13939 * 21 12 11 41 41 H 1.08996 * 109.58116 * 293.56697 * 21 12 11 42 42 H 1.09002 * 109.47461 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47181 * 299.96595 * 23 22 21 44 44 H 1.08999 * 109.47728 * 59.96496 * 23 22 21 45 45 H 1.08995 * 109.47216 * 300.15416 * 24 22 21 46 46 H 1.08996 * 109.47442 * 60.15530 * 24 22 21 47 47 H 1.09007 * 109.47167 * 180.15838 * 24 22 21 48 48 H 1.08992 * 115.55565 * 334.33100 * 26 25 4 49 49 H 1.08994 * 117.49932 * 0.02562 * 27 26 25 50 50 H 1.08996 * 117.49964 * 145.02484 * 27 26 25 51 51 H 1.09004 * 117.49549 * 252.51611 * 28 27 26 52 52 H 1.08996 * 117.51932 * 107.48138 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0895 0.0000 4 6 3.5598 0.6552 0.0006 5 6 4.7638 1.5060 0.0003 6 8 5.8681 0.9968 0.0004 7 7 4.6405 2.8481 -0.0002 8 6 5.8370 3.6936 -0.0010 9 1 6.6192 3.2152 -0.5904 10 6 6.3267 3.8855 1.4362 11 6 7.5971 4.7415 1.4284 12 7 7.3189 5.9945 0.7132 13 6 7.5754 7.2047 1.3003 14 1 7.5520 7.2989 2.3760 15 6 7.8658 8.3104 0.5130 16 7 8.3728 8.1465 -0.6905 17 14 7.5368 10.0311 1.1614 18 1 8.3281 10.2537 2.3982 19 1 7.9295 11.0303 0.1354 20 1 6.0907 10.1773 1.4659 21 6 6.7542 5.9244 -0.6414 22 6 5.4983 5.0551 -0.6125 23 6 4.9778 4.8594 -2.0379 24 6 4.4251 5.7424 0.2340 25 6 3.5311 -0.7574 -0.0046 26 6 4.7321 -1.6675 -0.0115 27 6 4.4841 -3.1629 -0.2199 28 6 4.8887 -2.6395 1.1597 29 7 2.2826 -1.1357 0.0007 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 1.9165 2.1169 -0.0004 34 1 3.7596 3.2543 0.0001 35 1 6.5454 2.9139 1.8788 36 1 5.5543 4.3863 2.0199 37 1 8.3980 4.2023 0.9225 38 1 7.8966 4.9642 2.4525 39 1 8.6213 7.2598 -0.9955 40 1 6.4952 6.9269 -0.9817 41 1 7.4849 5.4835 -1.3194 42 1 4.0821 4.2386 -2.0156 43 1 4.7368 5.8293 -2.4730 44 1 5.7435 4.3711 -2.6406 45 1 4.7973 5.8826 1.2487 46 1 4.1843 6.7120 -0.2019 47 1 3.5289 5.1222 0.2581 48 1 5.6409 -1.2435 -0.4386 49 1 3.4523 -3.4882 -0.3524 50 1 5.2297 -3.7229 -0.7843 51 1 5.9005 -2.8551 1.5029 52 1 4.1232 -2.6203 1.9354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940782992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:30 Heat of formation + Delta-G solvation = 62.574336 kcal Electronic energy + Delta-G solvation = -31730.062208 eV Core-core repulsion = 27731.647516 eV Total energy + Delta-G solvation = -3998.414691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.50803 -41.15638 -39.34595 -38.08174 -36.43566 -34.34200 -34.02455 -33.85443 -31.76952 -30.53959 -28.24313 -28.16419 -27.74949 -26.66865 -24.75629 -23.74704 -23.34604 -23.02193 -22.42385 -21.11507 -20.46855 -19.69602 -19.41916 -18.48000 -17.25208 -16.90361 -16.69987 -16.33180 -16.28149 -15.82518 -15.76226 -15.61180 -15.43486 -15.21004 -15.00129 -14.92928 -14.24280 -14.03261 -13.96725 -13.61569 -13.58865 -13.55514 -12.97000 -12.89460 -12.88676 -12.64991 -12.49502 -12.44601 -12.41615 -12.12760 -12.03844 -11.89739 -11.76587 -11.75479 -11.65915 -11.38915 -11.35337 -11.11112 -10.75588 -10.43146 -10.23675 -10.02249 -9.56486 -8.90132 -8.20921 -5.35494 0.52069 1.00597 1.43196 1.61132 1.67784 1.86759 2.26785 2.43622 2.68518 3.01503 3.24637 3.29758 3.53743 3.54814 3.66481 3.89021 3.92497 3.98001 4.03362 4.12201 4.22666 4.29018 4.30851 4.36372 4.42280 4.46521 4.53019 4.59083 4.69927 4.72056 4.73366 4.77767 4.80301 4.87398 4.91701 4.94939 4.98079 5.04949 5.15324 5.16439 5.18972 5.22889 5.25999 5.31837 5.40038 5.40967 5.58599 5.66270 5.88181 5.89543 6.42024 6.49783 6.72581 7.07799 7.38331 7.81293 8.25956 9.04100 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018770 B = 0.002648 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.357227 B =10573.294986 C =11332.086937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.355 5.355 3 C 0.123 3.877 4 C -0.313 4.313 5 C 0.591 3.409 6 O -0.583 6.583 7 N -0.703 5.703 8 C 0.180 3.820 9 H 0.052 0.948 10 C -0.126 4.126 11 C 0.146 3.854 12 N -0.609 5.609 13 C -0.347 4.347 14 H 0.050 0.950 15 C -0.074 4.074 16 N -0.943 5.943 17 Si 1.112 2.888 18 H -0.280 1.280 19 H -0.295 1.295 20 H -0.275 1.275 21 C 0.175 3.825 22 C -0.081 4.081 23 C -0.130 4.130 24 C -0.121 4.121 25 C 0.147 3.853 26 C -0.105 4.105 27 C -0.152 4.152 28 C -0.154 4.154 29 N -0.322 5.322 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.227 0.773 34 H 0.408 0.592 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.003 0.997 38 H 0.053 0.947 39 H 0.252 0.748 40 H 0.054 0.946 41 H -0.010 1.010 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.040 0.960 45 H 0.048 0.952 46 H 0.045 0.955 47 H 0.077 0.923 48 H 0.116 0.884 49 H 0.099 0.901 50 H 0.113 0.887 51 H 0.109 0.891 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.112 -16.873 0.915 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.133 5.133 3 C -0.031 4.031 4 C -0.328 4.328 5 C 0.381 3.619 6 O -0.464 6.464 7 N -0.355 5.355 8 C 0.075 3.925 9 H 0.070 0.930 10 C -0.166 4.166 11 C 0.020 3.980 12 N -0.333 5.333 13 C -0.477 4.477 14 H 0.068 0.932 15 C -0.270 4.270 16 N -0.585 5.585 17 Si 0.937 3.063 18 H -0.206 1.206 19 H -0.221 1.221 20 H -0.201 1.201 21 C 0.048 3.952 22 C -0.084 4.084 23 C -0.188 4.188 24 C -0.178 4.178 25 C -0.019 4.019 26 C -0.125 4.125 27 C -0.190 4.190 28 C -0.192 4.192 29 N -0.144 5.144 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.143 0.857 33 H 0.244 0.756 34 H 0.246 0.754 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.021 0.979 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.008 0.992 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.134 0.866 49 H 0.118 0.882 50 H 0.132 0.868 51 H 0.128 0.872 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.320 -16.605 0.552 27.029 hybrid contribution 1.041 -0.627 0.279 1.247 sum -20.279 -17.232 0.831 26.625 Atomic orbital electron populations 1.22443 0.70572 1.06795 1.05479 1.48673 1.08530 1.02999 1.53048 1.23632 0.88979 0.95436 0.95015 1.20175 0.93306 0.93484 1.25829 1.17549 0.87767 0.81801 0.74830 1.90715 1.28657 1.74424 1.52629 1.45770 1.09775 1.04801 1.75156 1.20498 0.86900 0.89443 0.95629 0.92988 1.22217 0.98558 0.98820 0.97017 1.20937 0.94410 0.86797 0.95820 1.44294 1.72394 1.01432 1.15183 1.20167 1.46474 0.88472 0.92600 0.93174 1.27109 0.96720 1.06450 0.96708 1.70904 1.40634 1.24922 1.22053 0.82898 0.77060 0.71728 0.74647 1.20602 1.22080 1.20076 1.20735 0.91292 0.97713 0.85439 1.21152 0.97062 0.93634 0.96502 1.21744 1.01078 1.01871 0.94088 1.21684 0.96836 0.99644 0.99655 1.21549 0.92380 0.92320 0.95700 1.20461 0.94981 0.90196 1.06858 1.23034 1.03395 0.93350 0.99172 1.22984 1.03405 1.01270 0.91583 1.77056 1.01039 1.08741 1.27538 0.88683 0.88680 0.85686 0.75647 0.75386 0.92497 0.90821 0.97941 0.92883 0.93812 0.92717 0.99248 0.90141 0.92368 0.94126 0.93254 0.93545 0.90398 0.86577 0.88240 0.86827 0.87247 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.44 127.77 1.46 1.87 16 2 N -0.36 -5.45 3.98 -367.79 -1.46 -6.92 16 3 C 0.12 1.85 10.99 84.28 0.93 2.77 16 4 C -0.31 -7.67 6.13 -20.15 -0.12 -7.80 16 5 C 0.59 17.66 7.78 86.66 0.67 18.34 16 6 O -0.58 -22.36 14.66 -4.02 -0.06 -22.42 16 7 N -0.70 -18.16 4.28 -445.66 -1.91 -20.06 16 8 C 0.18 6.07 1.57 45.02 0.07 6.14 16 9 H 0.05 2.09 7.57 -2.39 -0.02 2.07 16 10 C -0.13 -4.56 5.31 30.67 0.16 -4.40 16 11 C 0.15 6.47 6.52 86.36 0.56 7.03 16 12 N -0.61 -30.36 2.30 -699.91 -1.61 -31.97 16 13 C -0.35 -19.16 9.49 84.03 0.80 -18.36 16 14 H 0.05 2.77 7.94 -2.91 -0.02 2.75 16 15 C -0.07 -4.14 4.68 84.86 0.40 -3.74 16 16 N -0.94 -57.32 12.41 21.65 0.27 -57.05 16 17 Si 1.11 50.17 29.99 68.60 2.06 52.23 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 C 0.17 8.08 3.33 86.22 0.29 8.37 16 22 C -0.08 -2.76 0.56 -52.25 -0.03 -2.79 16 23 C -0.13 -3.70 8.31 71.98 0.60 -3.10 16 24 C -0.12 -3.64 7.82 71.98 0.56 -3.08 16 25 C 0.15 3.85 6.79 43.51 0.30 4.14 16 26 C -0.10 -2.71 5.65 -11.54 -0.07 -2.77 16 27 C -0.15 -3.01 10.14 30.60 0.31 -2.70 16 28 C -0.15 -3.27 10.23 30.60 0.31 -2.96 16 29 N -0.32 -7.42 12.08 -46.68 -0.56 -7.98 16 30 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.23 1.12 7.46 -2.91 -0.02 1.10 16 34 H 0.41 7.47 5.58 -92.71 -0.52 6.95 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 36 H 0.07 2.54 6.34 -2.39 -0.02 2.52 16 37 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.05 2.33 7.93 -2.39 -0.02 2.31 16 39 H 0.25 15.81 6.71 -92.70 -0.62 15.18 16 40 H 0.05 2.85 6.30 -2.39 -0.02 2.84 16 41 H -0.01 -0.53 7.87 -2.39 -0.02 -0.55 16 42 H 0.08 1.73 7.36 -2.39 -0.02 1.72 16 43 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.73 5.97 -2.39 -0.01 1.72 16 46 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.08 1.59 6.58 -2.38 -0.02 1.57 16 48 H 0.12 3.51 6.73 -2.39 -0.02 3.50 16 49 H 0.10 1.96 7.90 -2.39 -0.02 1.94 16 50 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 52 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -78.27 405.58 4.48 -73.79 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.55 Total: 23.42 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 7.20 Total: -3.03 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -5.27 Total: -123.98 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.42 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.06 Total: 52.23 kcal Total: -78.27 4.48 -73.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940782992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.363 kcal (2) G-P(sol) polarization free energy of solvation -78.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds