Wall clock time and date at job start Wed Apr 1 2020 04:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28466 * 124.88235 * 2 1 4 4 C 1.31812 * 110.07144 * 180.02562 * 3 2 1 5 5 C 1.47707 * 126.51514 * 179.97438 * 4 3 2 6 6 O 1.21575 * 119.99647 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00758 * 0.02562 * 5 4 3 8 8 C 1.46498 * 120.00514 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.45882 * 34.99950 * 8 7 5 10 10 C 1.53036 * 109.45730 * 275.02735 * 8 7 5 11 11 C 1.53185 * 109.31229 * 178.63012 * 10 8 7 12 12 N 1.46927 * 108.77786 * 54.63140 * 11 10 8 13 13 C 1.36945 * 120.62941 * 126.41644 * 12 11 10 14 14 H 1.07998 * 119.99610 * 331.82308 * 13 12 11 15 15 C 1.38810 * 119.99672 * 151.82951 * 13 12 11 16 16 N 1.31617 * 120.00186 * 343.05554 * 15 13 12 17 17 Si 1.86800 * 119.99802 * 163.06609 * 15 13 12 18 18 H 1.48503 * 109.47207 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47577 * 119.99583 * 17 15 13 20 20 H 1.48506 * 109.46740 * 239.99563 * 17 15 13 21 21 C 1.46919 * 118.73979 * 306.39360 * 12 11 10 22 22 C 1.53038 * 109.44948 * 154.96491 * 8 7 5 23 23 C 1.53001 * 109.49868 * 301.32921 * 22 8 7 24 24 C 1.53000 * 109.49669 * 61.42591 * 22 8 7 25 25 C 1.41496 * 106.96496 * 0.22128 * 4 3 2 26 26 C 1.35032 * 124.88468 * 179.97438 * 2 1 3 27 27 C 1.50700 * 126.38547 * 0.03826 * 26 2 1 28 28 C 1.52998 * 117.49744 * 213.62136 * 27 26 2 29 29 C 1.52999 * 117.49896 * 144.99558 * 27 26 2 30 30 H 1.09004 * 109.47005 * 89.97681 * 1 2 3 31 31 H 1.08994 * 109.46930 * 209.97864 * 1 2 3 32 32 H 1.09005 * 109.47256 * 329.97972 * 1 2 3 33 33 H 0.97008 * 119.99385 * 359.97438 * 7 5 4 34 34 H 1.09005 * 109.49713 * 298.57564 * 10 8 7 35 35 H 1.08999 * 109.50484 * 58.64422 * 10 8 7 36 36 H 1.09001 * 109.59165 * 174.41939 * 11 10 8 37 37 H 1.09005 * 109.58764 * 294.70305 * 11 10 8 38 38 H 0.97005 * 119.99776 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.58778 * 173.39674 * 21 12 11 40 40 H 1.08998 * 109.58840 * 293.68067 * 21 12 11 41 41 H 1.09004 * 109.47028 * 59.99741 * 23 22 8 42 42 H 1.09001 * 109.47447 * 180.02562 * 23 22 8 43 43 H 1.08997 * 109.46825 * 300.00381 * 23 22 8 44 44 H 1.08995 * 109.47378 * 59.99909 * 24 22 8 45 45 H 1.09008 * 109.46983 * 180.02562 * 24 22 8 46 46 H 1.09000 * 109.47392 * 299.99915 * 24 22 8 47 47 H 1.07999 * 127.25222 * 179.75062 * 25 4 3 48 48 H 1.09000 * 115.55076 * 359.32662 * 27 26 2 49 49 H 1.09000 * 117.49918 * 359.97438 * 28 27 26 50 50 H 1.09001 * 117.49930 * 145.02221 * 28 27 26 51 51 H 1.09000 * 117.50073 * 214.97489 * 29 27 26 52 52 H 1.08998 * 117.49838 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4740 0.7169 -0.0006 5 6 4.6272 1.6399 -0.0013 6 8 5.7597 1.1977 -0.0022 7 7 4.4241 2.9723 -0.0009 8 6 5.5679 3.8877 -0.0022 9 1 6.3767 3.4573 -0.5927 10 6 6.0466 4.1073 1.4347 11 6 7.2636 5.0376 1.4266 12 7 6.9103 6.2723 0.7128 13 6 7.0957 7.4953 1.3004 14 1 7.0575 7.5891 2.3756 15 6 7.3325 8.6144 0.5139 16 7 7.7086 8.4705 -0.7391 17 14 7.1178 10.3245 1.2342 18 1 6.6916 10.2144 2.6525 19 1 8.4066 11.0584 1.1598 20 1 6.0840 11.0603 0.4627 21 6 6.3549 6.1700 -0.6435 22 6 5.1480 5.2270 -0.6122 23 6 4.6388 5.0018 -2.0373 24 6 4.0364 5.8482 0.2359 25 6 3.5272 -0.6971 -0.0062 26 6 2.2373 -1.1077 0.0005 27 6 1.7534 -2.5349 0.0003 28 6 2.5964 -3.5667 0.7523 29 6 2.5798 -3.5609 -0.7777 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8901 0.5135 32 1 -0.3634 0.8898 0.5142 33 1 3.5205 3.3251 -0.0005 34 1 5.2462 4.5606 2.0196 35 1 6.3229 3.1500 1.8766 36 1 7.5478 5.2767 2.4514 37 1 8.0956 4.5466 0.9218 38 1 7.8737 9.2525 -1.2888 39 1 6.0394 7.1560 -0.9846 40 1 7.1127 5.7746 -1.3199 41 1 3.7819 4.3284 -2.0147 42 1 4.3403 5.9559 -2.4715 43 1 5.4318 4.5604 -2.6409 44 1 4.4005 6.0096 1.2504 45 1 3.7374 6.8019 -0.1993 46 1 3.1790 5.1757 0.2603 47 1 4.4108 -1.3180 -0.0118 48 1 0.6712 -2.6643 0.0113 49 1 3.5013 -3.2133 1.2468 50 1 2.0689 -4.3753 1.2583 51 1 2.0412 -4.3657 -1.2781 52 1 3.4736 -3.2037 -1.2890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940788548.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:44 Heat of formation + Delta-G solvation = 88.036287 kcal Electronic energy + Delta-G solvation = -31344.160538 eV Core-core repulsion = 27346.849960 eV Total energy + Delta-G solvation = -3997.310578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.87748 -39.74980 -37.90026 -37.59666 -34.49725 -33.71672 -32.70978 -31.92382 -30.59128 -29.41789 -27.68969 -26.67212 -25.85100 -25.14185 -23.85291 -23.09410 -22.80746 -21.75074 -20.57657 -20.50049 -19.48003 -18.30246 -17.55473 -16.83715 -16.49753 -16.29614 -15.48216 -15.41223 -14.82009 -14.66186 -14.54642 -14.19355 -13.94663 -13.72184 -13.56376 -13.26492 -13.16411 -13.03503 -12.92136 -12.59179 -12.22861 -12.18989 -11.98784 -11.55452 -11.44305 -11.42999 -11.25315 -11.22782 -10.99430 -10.83389 -10.76989 -10.62604 -10.52737 -10.14892 -10.03348 -9.94625 -9.83498 -9.58819 -9.35312 -9.23062 -8.96216 -8.54765 -8.39200 -6.61321 -5.74751 -3.16471 1.49915 1.89998 2.21245 3.38925 3.45574 3.47670 3.48158 3.49662 3.62335 3.97487 4.14711 4.41333 4.52885 4.53111 4.54738 4.69791 4.76746 4.96548 5.13515 5.21621 5.24930 5.34716 5.37901 5.48158 5.48651 5.55203 5.64425 5.67191 5.69340 5.80471 5.95946 6.04701 6.16885 6.19068 6.26554 6.31288 6.40106 6.49484 6.53187 6.56056 6.58140 6.74664 6.79562 6.90110 7.02191 7.07025 7.13019 7.38861 7.64014 7.70641 7.84324 7.96085 8.49210 8.50856 9.25757 9.89171 10.46584 11.33881 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.002309 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.515008 B =12122.155430 C =12498.082871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.282 5.282 3 N -0.261 5.261 4 C -0.006 4.006 5 C 0.598 3.402 6 O -0.536 6.536 7 N -0.705 5.705 8 C 0.163 3.837 9 H 0.082 0.918 10 C -0.143 4.143 11 C 0.148 3.852 12 N -0.590 5.590 13 C -0.247 4.247 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.902 5.902 17 Si 0.899 3.101 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.186 3.814 22 C -0.096 4.096 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.178 4.178 26 C 0.042 3.958 27 C -0.098 4.098 28 C -0.162 4.162 29 C -0.162 4.162 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.401 0.599 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.020 0.980 38 H 0.253 0.747 39 H 0.093 0.907 40 H 0.020 0.980 41 H 0.043 0.957 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.030 0.970 47 H 0.159 0.841 48 H 0.115 0.885 49 H 0.103 0.897 50 H 0.102 0.898 51 H 0.102 0.898 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.446 -22.122 -0.161 28.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.070 5.070 3 N -0.096 5.096 4 C -0.166 4.166 5 C 0.382 3.618 6 O -0.411 6.411 7 N -0.356 5.356 8 C 0.060 3.940 9 H 0.100 0.900 10 C -0.183 4.183 11 C 0.021 3.979 12 N -0.312 5.312 13 C -0.377 4.377 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.729 3.271 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.060 3.940 22 C -0.098 4.098 23 C -0.192 4.192 24 C -0.184 4.184 25 C -0.206 4.206 26 C -0.081 4.081 27 C -0.118 4.118 28 C -0.200 4.200 29 C -0.199 4.199 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.237 0.763 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.111 0.889 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.070 0.930 46 H 0.049 0.951 47 H 0.177 0.823 48 H 0.133 0.867 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.120 0.880 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.414 -21.311 -0.261 27.522 hybrid contribution -0.228 0.407 0.241 0.525 sum -17.642 -20.904 -0.019 27.354 Atomic orbital electron populations 1.22145 0.73556 1.05342 1.04402 1.45202 1.07518 1.02507 1.51739 1.73568 1.03094 1.13332 1.19622 1.22040 0.90832 0.94124 1.09643 1.16898 0.86359 0.81813 0.76740 1.90786 1.22425 1.77177 1.50747 1.46206 1.11148 1.05039 1.73193 1.21045 0.87275 0.88417 0.97274 0.89987 1.22452 1.00458 0.99578 0.95828 1.20874 0.92945 0.87543 0.96582 1.44059 1.71620 1.00888 1.14605 1.19198 1.42640 0.84356 0.91473 0.91694 1.25027 0.99626 0.98381 0.96603 1.70036 1.48678 1.28460 1.07499 0.86271 0.77360 0.84911 0.78530 1.20308 1.21819 1.21652 1.20821 0.89292 0.97768 0.86148 1.21551 0.99395 0.94830 0.94057 1.21766 1.00120 1.00930 0.96408 1.21746 0.95927 0.99226 1.01544 1.21393 0.96315 0.93644 1.09216 1.20400 0.90618 0.89015 1.08113 1.20265 0.98068 0.85151 1.08308 1.23109 1.02048 0.99972 0.94836 1.23107 1.02177 1.00035 0.94614 0.89731 0.88854 0.88386 0.76271 0.91840 0.92706 0.92612 0.96196 0.93737 0.88939 0.96199 0.93767 0.92631 0.93064 0.91111 0.92978 0.95080 0.82321 0.86726 0.87866 0.88005 0.88010 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 11.05 59.85 0.66 1.11 16 2 N -0.28 -2.88 3.70 -63.85 -0.24 -3.11 16 3 N -0.26 -3.46 11.67 33.42 0.39 -3.07 16 4 C -0.01 -0.09 7.13 -82.77 -0.59 -0.68 16 5 C 0.60 10.32 7.79 -12.39 -0.10 10.23 16 6 O -0.54 -10.79 16.59 5.30 0.09 -10.70 16 7 N -0.71 -11.57 4.29 -54.76 -0.23 -11.81 16 8 C 0.16 3.02 1.57 -67.89 -0.11 2.91 16 9 H 0.08 1.70 7.58 -51.93 -0.39 1.30 16 10 C -0.14 -2.73 5.31 -26.62 -0.14 -2.88 16 11 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 12 N -0.59 -14.65 2.43 -172.33 -0.42 -15.07 16 13 C -0.25 -6.70 9.58 -15.06 -0.14 -6.85 16 14 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 15 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 16 N -0.90 -26.06 11.20 55.49 0.62 -25.43 16 17 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 C 0.19 4.39 3.98 -3.71 -0.01 4.37 16 22 C -0.10 -1.80 0.56 -154.39 -0.09 -1.89 16 23 C -0.13 -2.25 8.31 37.16 0.31 -1.94 16 24 C -0.13 -2.28 7.83 37.16 0.29 -1.99 16 25 C -0.18 -2.26 9.85 -39.36 -0.39 -2.65 16 26 C 0.04 0.43 6.60 -82.21 -0.54 -0.12 16 27 C -0.10 -0.64 5.94 -91.77 -0.55 -1.19 16 28 C -0.16 -0.93 10.05 -26.73 -0.27 -1.20 16 29 C -0.16 -0.93 10.05 -26.73 -0.27 -1.20 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.25 7.12 -51.93 -0.37 -0.12 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.40 6.06 6.38 -40.82 -0.26 5.80 16 34 H 0.06 1.20 6.34 -51.93 -0.33 0.87 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.04 0.67 7.36 -51.93 -0.38 0.28 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.39 5.97 -51.93 -0.31 1.08 16 45 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 46 H 0.03 0.47 6.58 -51.93 -0.34 0.13 16 47 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 48 H 0.11 0.50 7.16 -51.93 -0.37 0.12 16 49 H 0.10 0.69 7.95 -51.93 -0.41 0.28 16 50 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.10 0.69 7.96 -51.93 -0.41 0.28 16 LS Contribution 407.88 15.07 6.15 6.15 Total: -1.00 -32.86 407.88 -9.22 -42.08 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.51 Total: 5.10 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.04 Total: -0.78 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.12 Total: -58.49 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.86 -9.22 -42.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940788548.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.118 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds