Wall clock time and date at job start Wed Apr 1 2020 04:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28448 * 125.19289 * 2 1 4 4 C 1.30865 * 110.92903 * 179.97438 * 3 2 1 5 5 C 1.39669 * 107.86179 * 359.97438 * 4 3 2 6 6 C 1.50706 * 127.31934 * 180.02562 * 5 4 3 7 7 C 1.52994 * 117.49707 * 351.28075 * 6 5 4 8 8 C 1.52997 * 117.49581 * 59.93726 * 6 5 4 9 9 C 1.36606 * 125.19059 * 180.30415 * 2 1 3 10 10 C 1.47155 * 126.88567 * 0.02562 * 9 2 1 11 11 O 1.21638 * 120.00048 * 259.03970 * 10 9 2 12 12 N 1.34773 * 120.00286 * 79.04199 * 10 9 2 13 13 C 1.46501 * 120.00279 * 185.26396 * 12 10 9 14 14 H 1.08997 * 109.45813 * 34.97171 * 13 12 10 15 15 C 1.53038 * 109.45916 * 274.99669 * 13 12 10 16 16 C 1.53195 * 109.31293 * 178.61316 * 15 13 12 17 17 N 1.46928 * 108.77663 * 54.63387 * 16 15 13 18 18 C 1.36929 * 120.62906 * 126.41154 * 17 16 15 19 19 H 1.07999 * 120.00273 * 325.48452 * 18 17 16 20 20 C 1.38816 * 119.99850 * 145.48480 * 18 17 16 21 21 N 1.31612 * 119.99746 * 346.86536 * 20 18 17 22 22 Si 1.86804 * 119.99937 * 166.86914 * 20 18 17 23 23 H 1.48495 * 109.47225 * 89.99783 * 22 20 18 24 24 H 1.48501 * 109.47040 * 209.99720 * 22 20 18 25 25 H 1.48496 * 109.47061 * 329.99805 * 22 20 18 26 26 C 1.46929 * 118.73918 * 306.39795 * 17 16 15 27 27 C 1.53039 * 109.46137 * 154.93071 * 13 12 10 28 28 C 1.53006 * 109.49514 * 301.33674 * 27 13 12 29 29 C 1.52996 * 109.49998 * 61.43251 * 27 13 12 30 30 H 1.09005 * 109.46868 * 86.77919 * 1 2 3 31 31 H 1.09002 * 109.47476 * 206.77635 * 1 2 3 32 32 H 1.08997 * 109.47409 * 326.77654 * 1 2 3 33 33 H 1.07994 * 126.06703 * 179.97438 * 4 3 2 34 34 H 1.08997 * 115.54849 * 205.61076 * 6 5 4 35 35 H 1.09004 * 117.49863 * 215.00571 * 7 6 5 36 36 H 1.09005 * 117.50329 * 0.02562 * 7 6 5 37 37 H 1.08997 * 117.50479 * 359.97438 * 8 6 5 38 38 H 1.09001 * 117.49582 * 144.97397 * 8 6 5 39 39 H 0.96998 * 119.99612 * 5.25951 * 12 10 9 40 40 H 1.08995 * 109.50116 * 298.56863 * 15 13 12 41 41 H 1.09000 * 109.49768 * 58.63359 * 15 13 12 42 42 H 1.08994 * 109.59022 * 174.42433 * 16 15 13 43 43 H 1.09004 * 109.58711 * 294.70926 * 16 15 13 44 44 H 0.97008 * 119.99390 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.58744 * 173.39033 * 26 17 16 46 46 H 1.09006 * 109.58223 * 293.67219 * 26 17 16 47 47 H 1.08993 * 109.47287 * 60.00167 * 28 27 13 48 48 H 1.09003 * 109.46805 * 180.02562 * 28 27 13 49 49 H 1.09000 * 109.47181 * 299.99620 * 28 27 13 50 50 H 1.09000 * 109.47115 * 59.99783 * 29 27 13 51 51 H 1.08997 * 109.47210 * 180.02562 * 29 27 13 52 52 H 1.09002 * 109.47295 * 300.00420 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 0.0005 5 6 3.5612 -0.6667 0.0015 6 6 4.8147 -1.5033 0.0030 7 6 6.1470 -0.7799 -0.2023 8 6 5.7788 -1.3292 1.1781 9 6 2.2522 -1.1164 -0.0059 10 6 1.7993 -2.5165 -0.0139 11 8 1.8023 -3.1626 1.0167 12 7 1.3812 -3.0830 -1.1631 13 6 0.8226 -4.4373 -1.1513 14 1 0.2619 -4.5908 -0.2293 15 6 1.9595 -5.4585 -1.2328 16 6 1.3740 -6.8734 -1.1853 17 7 0.3677 -7.0046 -2.2478 18 6 0.4420 -8.0260 -3.1568 19 1 1.4052 -8.3849 -3.4882 20 6 -0.7206 -8.6001 -3.6524 21 7 -1.8756 -8.3533 -3.0716 22 14 -0.6458 -9.7230 -5.1434 23 1 -0.4392 -11.1243 -4.6979 24 1 -1.9201 -9.6268 -5.8999 25 1 0.4813 -9.3103 -6.0178 26 6 -0.7201 -6.0193 -2.3162 27 6 -0.1111 -4.6141 -2.3509 28 6 -1.2289 -3.5714 -2.2860 29 6 0.6822 -4.4333 -3.6466 30 1 -0.3633 0.0577 -1.0261 31 1 -0.3634 -0.9175 0.4630 32 1 -0.3634 0.8596 0.5630 33 1 4.3048 1.4166 0.0003 34 1 4.7136 -2.5021 -0.4215 35 1 6.9227 -1.3028 -0.7619 36 1 6.1171 0.3013 -0.3380 37 1 5.5068 -0.6093 1.9500 38 1 6.3118 -2.2137 1.5270 39 1 1.4502 -2.5941 -1.9979 40 1 2.5052 -5.3217 -2.1663 41 1 2.6372 -5.3164 -0.3910 42 1 2.1684 -7.6030 -1.3423 43 1 0.9080 -7.0437 -0.2148 44 1 -2.6881 -8.7548 -3.4178 45 1 -1.3074 -6.1855 -3.2193 46 1 -1.3606 -6.1208 -1.4400 47 1 -0.7951 -2.5718 -2.3079 48 1 -1.8939 -3.6980 -3.1403 49 1 -1.7945 -3.7020 -1.3634 50 1 1.4774 -5.1773 -3.6926 51 1 0.0167 -4.5589 -4.5006 52 1 1.1177 -3.4343 -3.6695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940790352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:53 Heat of formation + Delta-G solvation = 86.406763 kcal Electronic energy + Delta-G solvation = -32159.487128 eV Core-core repulsion = 28162.105888 eV Total energy + Delta-G solvation = -3997.381240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.69668 -39.94820 -38.04778 -37.39440 -34.64544 -33.36254 -32.93910 -32.07396 -30.97203 -29.34848 -27.33103 -26.85005 -26.01725 -25.33405 -23.86529 -23.08636 -22.50902 -21.69039 -20.65353 -20.29829 -19.82385 -18.60717 -17.64718 -16.77953 -16.47647 -15.91008 -15.80354 -15.57447 -14.92130 -14.65485 -14.49243 -14.31559 -14.01701 -13.73246 -13.53485 -13.34270 -13.21537 -13.12732 -12.98675 -12.67820 -12.38350 -12.15924 -11.72219 -11.68897 -11.56824 -11.40143 -11.17652 -11.10818 -10.91711 -10.84976 -10.71856 -10.67663 -10.48447 -10.32551 -10.18236 -10.13406 -9.99753 -9.76349 -9.47739 -9.31102 -8.79845 -8.67425 -8.51261 -6.61336 -5.84043 -3.32811 1.47757 2.03420 2.42759 2.71805 3.24736 3.33841 3.41135 3.42617 3.81366 4.18755 4.45009 4.55720 4.65336 4.72790 4.82134 4.88666 5.01651 5.05957 5.11145 5.12714 5.21266 5.33059 5.35379 5.47796 5.48578 5.51809 5.68590 5.77174 5.78438 5.87679 5.96105 5.97541 6.01035 6.07172 6.13581 6.21764 6.31181 6.32748 6.36889 6.44546 6.53252 6.56466 6.64378 6.79363 6.84224 6.93365 6.99272 7.23654 7.47559 7.57770 7.77498 7.88078 8.15683 8.44811 9.17779 9.78557 10.39517 11.24574 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.002912 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.627495 B = 9614.128623 C =10446.966242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.274 5.274 3 N -0.285 5.285 4 C 0.006 3.994 5 C -0.124 4.124 6 C -0.081 4.081 7 C -0.171 4.171 8 C -0.167 4.167 9 C -0.020 4.020 10 C 0.587 3.413 11 O -0.518 6.518 12 N -0.706 5.706 13 C 0.164 3.836 14 H 0.082 0.918 15 C -0.143 4.143 16 C 0.147 3.853 17 N -0.587 5.587 18 C -0.256 4.256 19 H 0.062 0.938 20 C 0.010 3.990 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.191 3.809 27 C -0.097 4.097 28 C -0.135 4.135 29 C -0.127 4.127 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.182 0.818 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.398 0.602 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.020 0.980 44 H 0.254 0.746 45 H 0.084 0.916 46 H 0.021 0.979 47 H 0.040 0.960 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.072 0.928 51 H 0.052 0.948 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.259 18.208 3.759 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.062 5.062 3 N -0.115 5.115 4 C -0.172 4.172 5 C -0.135 4.135 6 C -0.100 4.100 7 C -0.208 4.208 8 C -0.204 4.204 9 C -0.149 4.149 10 C 0.369 3.631 11 O -0.392 6.392 12 N -0.357 5.357 13 C 0.061 3.939 14 H 0.100 0.900 15 C -0.184 4.184 16 C 0.020 3.980 17 N -0.309 5.309 18 C -0.385 4.385 19 H 0.080 0.920 20 C -0.189 4.189 21 N -0.543 5.543 22 Si 0.729 3.271 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.065 3.935 27 C -0.100 4.100 28 C -0.193 4.193 29 C -0.185 4.185 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.199 0.801 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.234 0.766 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.102 0.898 46 H 0.039 0.961 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.072 0.928 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.129 18.552 4.466 20.370 hybrid contribution 0.408 -0.948 -1.150 1.545 sum 7.537 17.605 3.316 19.435 Atomic orbital electron populations 1.22204 0.72974 1.05521 1.04685 1.45512 1.07392 1.01814 1.51446 1.73133 1.03967 1.13591 1.20830 1.23312 0.93379 0.94053 1.06429 1.19767 0.91529 0.93467 1.08702 1.20161 0.86838 0.98866 1.04163 1.22991 0.97445 1.00455 0.99912 1.23002 1.02387 1.03416 0.91631 1.21422 0.91593 0.89189 1.12675 1.17010 0.77704 0.84010 0.84408 1.90861 1.52607 1.63170 1.32608 1.46403 1.62148 1.18186 1.09012 1.21103 0.94380 0.78924 0.99505 0.90006 1.22455 0.97419 0.97296 1.01190 1.20892 0.92614 0.92652 0.91815 1.43954 1.28071 1.28482 1.30439 1.19074 0.92045 1.10526 1.16891 0.92035 1.25208 0.96310 0.97872 0.99551 1.69992 0.98054 1.46432 1.39862 0.86349 0.76997 0.80870 0.82838 1.21306 1.21607 1.20393 1.20725 0.89402 0.82110 1.01301 1.21592 0.94788 0.99897 0.93697 1.21780 0.98323 0.97314 1.01840 1.21751 1.00774 0.99297 0.96651 0.89414 0.88756 0.88317 0.80067 0.87111 0.88397 0.88581 0.88668 0.88424 0.76644 0.91760 0.92557 0.92500 0.96242 0.93585 0.89777 0.96061 0.94064 0.92428 0.92982 0.90953 0.92842 0.95238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 11.19 59.84 0.67 1.40 16 2 N -0.27 -3.26 3.75 -63.88 -0.24 -3.50 16 3 N -0.28 -3.50 11.90 30.59 0.36 -3.14 16 4 C 0.01 0.06 11.41 -17.43 -0.20 -0.13 16 5 C -0.12 -1.53 5.94 -104.02 -0.62 -2.14 16 6 C -0.08 -0.89 6.12 -91.77 -0.56 -1.45 16 7 C -0.17 -1.42 10.05 -26.70 -0.27 -1.68 16 8 C -0.17 -1.58 10.24 -26.70 -0.27 -1.85 16 9 C -0.02 -0.27 6.71 -82.06 -0.55 -0.82 16 10 C 0.59 8.69 6.82 -12.64 -0.09 8.61 16 11 O -0.52 -9.60 16.76 5.24 0.09 -9.51 16 12 N -0.71 -9.60 4.28 -54.93 -0.24 -9.83 16 13 C 0.16 2.66 1.53 -67.89 -0.10 2.56 16 14 H 0.08 1.50 7.66 -51.93 -0.40 1.10 16 15 C -0.14 -2.50 5.31 -26.61 -0.14 -2.64 16 16 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 17 N -0.59 -13.83 2.40 -172.32 -0.41 -14.25 16 18 C -0.26 -6.68 9.53 -15.06 -0.14 -6.82 16 19 H 0.06 1.60 7.86 -52.49 -0.41 1.19 16 20 C 0.01 0.27 4.97 -17.43 -0.09 0.18 16 21 N -0.90 -25.17 11.45 55.49 0.64 -24.53 16 22 Si 0.90 20.99 29.57 -169.99 -5.03 15.96 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.19 4.19 3.92 -3.71 -0.01 4.17 16 27 C -0.10 -1.62 0.56 -154.39 -0.09 -1.70 16 28 C -0.13 -1.89 8.31 37.16 0.31 -1.58 16 29 C -0.13 -2.03 7.83 37.16 0.29 -1.74 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.82 7.71 -51.93 -0.40 0.42 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.18 1.48 7.34 -52.49 -0.39 1.09 16 34 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.68 7.12 -51.93 -0.37 0.31 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.40 4.79 6.65 -40.82 -0.27 4.52 16 40 H 0.06 1.11 6.34 -51.93 -0.33 0.78 16 41 H 0.06 0.97 8.08 -51.93 -0.42 0.56 16 42 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.08 2.07 6.44 -51.93 -0.33 1.74 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.04 0.48 7.36 -51.93 -0.38 0.10 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.07 1.31 5.97 -51.93 -0.31 1.00 16 51 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 52 H 0.03 0.38 6.58 -51.93 -0.34 0.04 16 LS Contribution 409.31 15.07 6.17 6.17 Total: -1.00 -30.98 409.31 -9.10 -40.08 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.55 Total: 5.18 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.89 Total: -2.64 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.11 Total: -55.24 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.98 -9.10 -40.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940790352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.485 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds