Wall clock time and date at job start Wed Apr 1 2020 04:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28448 * 125.19289 * 2 1 4 4 C 1.30865 * 110.92903 * 179.97438 * 3 2 1 5 5 C 1.39669 * 107.86179 * 359.97438 * 4 3 2 6 6 C 1.50706 * 127.31934 * 180.02562 * 5 4 3 7 7 C 1.52994 * 117.49707 * 351.28075 * 6 5 4 8 8 C 1.52997 * 117.49581 * 59.93726 * 6 5 4 9 9 C 1.36606 * 125.19059 * 180.30415 * 2 1 3 10 10 C 1.47155 * 126.88567 * 0.02562 * 9 2 1 11 11 O 1.21638 * 120.00048 * 259.03970 * 10 9 2 12 12 N 1.34773 * 120.00286 * 79.04199 * 10 9 2 13 13 C 1.46501 * 120.00279 * 185.26396 * 12 10 9 14 14 H 1.08997 * 109.45813 * 34.97171 * 13 12 10 15 15 C 1.53038 * 109.45916 * 274.99669 * 13 12 10 16 16 C 1.53195 * 109.31293 * 178.61316 * 15 13 12 17 17 N 1.46928 * 108.77663 * 54.63387 * 16 15 13 18 18 C 1.36929 * 120.62906 * 126.41154 * 17 16 15 19 19 H 1.07999 * 120.00273 * 325.48452 * 18 17 16 20 20 C 1.38816 * 119.99850 * 145.48480 * 18 17 16 21 21 N 1.31612 * 119.99746 * 346.86536 * 20 18 17 22 22 Si 1.86804 * 119.99937 * 166.86914 * 20 18 17 23 23 H 1.48495 * 109.47225 * 89.99783 * 22 20 18 24 24 H 1.48501 * 109.47040 * 209.99720 * 22 20 18 25 25 H 1.48496 * 109.47061 * 329.99805 * 22 20 18 26 26 C 1.46929 * 118.73918 * 306.39795 * 17 16 15 27 27 C 1.53039 * 109.46137 * 154.93071 * 13 12 10 28 28 C 1.53006 * 109.49514 * 301.33674 * 27 13 12 29 29 C 1.52996 * 109.49998 * 61.43251 * 27 13 12 30 30 H 1.09005 * 109.46868 * 86.77919 * 1 2 3 31 31 H 1.09002 * 109.47476 * 206.77635 * 1 2 3 32 32 H 1.08997 * 109.47409 * 326.77654 * 1 2 3 33 33 H 1.07994 * 126.06703 * 179.97438 * 4 3 2 34 34 H 1.08997 * 115.54849 * 205.61076 * 6 5 4 35 35 H 1.09004 * 117.49863 * 215.00571 * 7 6 5 36 36 H 1.09005 * 117.50329 * 0.02562 * 7 6 5 37 37 H 1.08997 * 117.50479 * 359.97438 * 8 6 5 38 38 H 1.09001 * 117.49582 * 144.97397 * 8 6 5 39 39 H 0.96998 * 119.99612 * 5.25951 * 12 10 9 40 40 H 1.08995 * 109.50116 * 298.56863 * 15 13 12 41 41 H 1.09000 * 109.49768 * 58.63359 * 15 13 12 42 42 H 1.08994 * 109.59022 * 174.42433 * 16 15 13 43 43 H 1.09004 * 109.58711 * 294.70926 * 16 15 13 44 44 H 0.97008 * 119.99390 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.58744 * 173.39033 * 26 17 16 46 46 H 1.09006 * 109.58223 * 293.67219 * 26 17 16 47 47 H 1.08993 * 109.47287 * 60.00167 * 28 27 13 48 48 H 1.09003 * 109.46805 * 180.02562 * 28 27 13 49 49 H 1.09000 * 109.47181 * 299.99620 * 28 27 13 50 50 H 1.09000 * 109.47115 * 59.99783 * 29 27 13 51 51 H 1.08997 * 109.47210 * 180.02562 * 29 27 13 52 52 H 1.09002 * 109.47295 * 300.00420 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 0.0005 5 6 3.5612 -0.6667 0.0015 6 6 4.8147 -1.5033 0.0030 7 6 6.1470 -0.7799 -0.2023 8 6 5.7788 -1.3292 1.1781 9 6 2.2522 -1.1164 -0.0059 10 6 1.7993 -2.5165 -0.0139 11 8 1.8023 -3.1626 1.0167 12 7 1.3812 -3.0830 -1.1631 13 6 0.8226 -4.4373 -1.1513 14 1 0.2619 -4.5908 -0.2293 15 6 1.9595 -5.4585 -1.2328 16 6 1.3740 -6.8734 -1.1853 17 7 0.3677 -7.0046 -2.2478 18 6 0.4420 -8.0260 -3.1568 19 1 1.4052 -8.3849 -3.4882 20 6 -0.7206 -8.6001 -3.6524 21 7 -1.8756 -8.3533 -3.0716 22 14 -0.6458 -9.7230 -5.1434 23 1 -0.4392 -11.1243 -4.6979 24 1 -1.9201 -9.6268 -5.8999 25 1 0.4813 -9.3103 -6.0178 26 6 -0.7201 -6.0193 -2.3162 27 6 -0.1111 -4.6141 -2.3509 28 6 -1.2289 -3.5714 -2.2860 29 6 0.6822 -4.4333 -3.6466 30 1 -0.3633 0.0577 -1.0261 31 1 -0.3634 -0.9175 0.4630 32 1 -0.3634 0.8596 0.5630 33 1 4.3048 1.4166 0.0003 34 1 4.7136 -2.5021 -0.4215 35 1 6.9227 -1.3028 -0.7619 36 1 6.1171 0.3013 -0.3380 37 1 5.5068 -0.6093 1.9500 38 1 6.3118 -2.2137 1.5270 39 1 1.4502 -2.5941 -1.9979 40 1 2.5052 -5.3217 -2.1663 41 1 2.6372 -5.3164 -0.3910 42 1 2.1684 -7.6030 -1.3423 43 1 0.9080 -7.0437 -0.2148 44 1 -2.6881 -8.7548 -3.4178 45 1 -1.3074 -6.1855 -3.2193 46 1 -1.3606 -6.1208 -1.4400 47 1 -0.7951 -2.5718 -2.3079 48 1 -1.8939 -3.6980 -3.1403 49 1 -1.7945 -3.7020 -1.3634 50 1 1.4774 -5.1773 -3.6926 51 1 0.0167 -4.5589 -4.5006 52 1 1.1177 -3.4343 -3.6695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940790352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:51 Heat of formation + Delta-G solvation = 69.053697 kcal Electronic energy + Delta-G solvation = -32160.239613 eV Core-core repulsion = 28162.105888 eV Total energy + Delta-G solvation = -3998.133725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.58004 -41.29606 -39.47884 -38.13784 -36.29819 -34.42040 -34.08715 -33.81223 -32.11465 -30.92468 -28.18764 -28.05824 -27.60232 -26.97085 -24.98225 -24.28653 -23.27051 -22.95531 -22.30560 -21.23960 -20.82903 -19.81996 -19.11345 -18.40730 -17.54513 -16.95331 -16.81166 -16.74896 -16.49869 -15.81362 -15.76293 -15.54906 -15.23751 -15.14441 -14.97825 -14.88116 -14.49716 -14.10020 -13.85322 -13.80254 -13.69335 -13.27932 -13.05036 -12.95969 -12.89346 -12.75679 -12.63495 -12.44421 -12.35814 -12.32155 -12.00958 -11.92027 -11.87181 -11.69169 -11.65285 -11.39785 -11.33663 -11.23575 -11.04126 -10.54927 -10.20183 -10.12011 -9.52529 -8.57745 -7.86751 -5.38762 0.53238 1.06089 1.47148 1.48943 1.57847 1.59295 1.67618 2.13199 2.51263 3.07909 3.29663 3.42224 3.49532 3.66697 3.71392 3.91401 3.96613 3.98770 4.07714 4.14136 4.24817 4.27793 4.29632 4.32992 4.43130 4.50472 4.53815 4.56216 4.63627 4.78240 4.83890 4.85090 4.90780 4.92763 4.97858 5.03644 5.07871 5.09323 5.21706 5.26928 5.30309 5.31839 5.32081 5.42519 5.43967 5.48576 5.60752 5.69631 5.71876 5.73399 6.36162 6.43836 6.98425 7.02014 7.17745 7.84399 8.41110 9.19455 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.002912 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.627495 B = 9614.128623 C =10446.966242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.273 5.273 3 N -0.293 5.293 4 C 0.005 3.995 5 C -0.125 4.125 6 C -0.107 4.107 7 C -0.147 4.147 8 C -0.171 4.171 9 C -0.044 4.044 10 C 0.598 3.402 11 O -0.560 6.560 12 N -0.690 5.690 13 C 0.177 3.823 14 H 0.060 0.940 15 C -0.129 4.129 16 C 0.145 3.855 17 N -0.601 5.601 18 C -0.262 4.262 19 H 0.062 0.938 20 C -0.040 4.040 21 N -0.932 5.932 22 Si 0.962 3.038 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.268 1.268 26 C 0.201 3.799 27 C -0.086 4.086 28 C -0.130 4.130 29 C -0.121 4.121 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.211 0.789 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.411 0.589 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.004 0.996 44 H 0.250 0.750 45 H 0.054 0.946 46 H -0.010 1.010 47 H 0.074 0.926 48 H 0.057 0.943 49 H 0.047 0.953 50 H 0.051 0.949 51 H 0.046 0.954 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.873 20.846 2.714 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.061 5.061 3 N -0.124 5.124 4 C -0.171 4.171 5 C -0.136 4.136 6 C -0.126 4.126 7 C -0.183 4.183 8 C -0.208 4.208 9 C -0.173 4.173 10 C 0.382 3.618 11 O -0.437 6.437 12 N -0.341 5.341 13 C 0.073 3.927 14 H 0.078 0.922 15 C -0.169 4.169 16 C 0.019 3.981 17 N -0.324 5.324 18 C -0.392 4.392 19 H 0.080 0.920 20 C -0.236 4.236 21 N -0.577 5.577 22 Si 0.790 3.210 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.193 1.193 26 C 0.075 3.925 27 C -0.088 4.088 28 C -0.188 4.188 29 C -0.178 4.178 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.227 0.773 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.248 0.752 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.022 0.978 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.008 0.992 47 H 0.093 0.907 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.762 21.225 3.402 23.213 hybrid contribution -0.059 -1.776 -0.742 1.925 sum 8.703 19.450 2.660 21.473 Atomic orbital electron populations 1.22486 0.71418 1.06034 1.06312 1.45777 1.08320 1.01141 1.50903 1.73134 1.04579 1.13699 1.21018 1.23770 0.93805 0.93964 1.05584 1.20032 0.91497 0.94204 1.07823 1.20186 0.87729 0.98676 1.06037 1.23107 0.95468 1.01328 0.98445 1.23059 1.01871 1.03776 0.92066 1.21207 0.92503 0.88542 1.15046 1.17134 0.76507 0.84533 0.83669 1.90844 1.54325 1.64420 1.34066 1.46085 1.61562 1.16927 1.09519 1.20717 0.93663 0.80092 0.98250 0.92187 1.22254 0.97594 0.95389 1.01661 1.20948 0.91945 0.94942 0.90291 1.44170 1.28709 1.28679 1.30851 1.19362 0.92065 1.10786 1.16975 0.92035 1.25900 0.96038 0.99555 1.02124 1.70146 0.98457 1.47787 1.41295 0.85365 0.76923 0.78834 0.79834 1.21449 1.21913 1.19286 1.20504 0.88761 0.84958 0.98296 1.21351 0.95699 0.97295 0.94501 1.21742 0.97379 0.97938 1.01709 1.21672 0.99846 1.00775 0.95536 0.87346 0.89328 0.86679 0.77255 0.88648 0.87232 0.86846 0.88620 0.88219 0.75152 0.90881 0.92310 0.92536 0.97772 0.94088 0.92744 0.99205 0.90736 0.92400 0.93411 0.93017 0.93464 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 11.19 127.77 1.43 2.55 16 2 N -0.27 -5.91 3.75 -356.03 -1.33 -7.25 16 3 N -0.29 -6.46 11.90 -57.15 -0.68 -7.14 16 4 C 0.01 0.11 11.41 85.18 0.97 1.08 16 5 C -0.12 -2.83 5.94 -19.48 -0.12 -2.94 16 6 C -0.11 -2.18 6.12 -11.54 -0.07 -2.25 16 7 C -0.15 -2.00 10.05 30.61 0.31 -1.69 16 8 C -0.17 -2.92 10.24 30.62 0.31 -2.61 16 9 C -0.04 -1.11 6.71 40.78 0.27 -0.84 16 10 C 0.60 17.21 6.82 86.59 0.59 17.80 16 11 O -0.56 -20.85 16.76 -4.15 -0.07 -20.92 16 12 N -0.69 -17.69 4.28 -445.94 -1.91 -19.60 16 13 C 0.18 5.70 1.53 45.02 0.07 5.77 16 14 H 0.06 2.25 7.66 -2.39 -0.02 2.23 16 15 C -0.13 -4.49 5.31 30.67 0.16 -4.32 16 16 C 0.14 6.17 6.52 86.36 0.56 6.73 16 17 N -0.60 -29.18 2.40 -699.08 -1.68 -30.85 16 18 C -0.26 -13.94 9.53 84.04 0.80 -13.13 16 19 H 0.06 3.23 7.86 -2.91 -0.02 3.20 16 20 C -0.04 -2.17 4.97 84.86 0.42 -1.75 16 21 N -0.93 -53.84 11.45 21.65 0.25 -53.60 16 22 Si 0.96 43.75 29.57 68.60 2.03 45.78 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 C 0.20 9.12 3.92 86.36 0.34 9.46 16 27 C -0.09 -2.83 0.56 -52.10 -0.03 -2.86 16 28 C -0.13 -3.47 8.31 71.98 0.60 -2.87 16 29 C -0.12 -3.67 7.83 71.98 0.56 -3.11 16 30 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.09 1.40 7.71 -2.39 -0.02 1.39 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.21 2.62 7.34 -2.91 -0.02 2.60 16 34 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.11 1.15 7.12 -2.38 -0.02 1.14 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.41 8.68 6.65 -92.71 -0.62 8.06 16 40 H 0.07 2.44 6.34 -2.39 -0.02 2.42 16 41 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 42 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 43 H 0.00 0.19 8.14 -2.38 -0.02 0.18 16 44 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 45 H 0.05 2.79 6.44 -2.39 -0.02 2.77 16 46 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 47 H 0.07 1.50 7.36 -2.39 -0.02 1.48 16 48 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.05 1.80 5.97 -2.39 -0.01 1.78 16 51 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.07 1.51 6.58 -2.39 -0.02 1.50 16 Total: -1.00 -69.39 409.31 4.10 -65.28 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.31 Total: 23.27 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 7.19 Total: 5.03 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -5.35 Total: -118.44 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.07 Total: -20.92 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.39 4.10 -65.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940790352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.337 kcal (2) G-P(sol) polarization free energy of solvation -69.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds