Wall clock time and date at job start Wed Apr 1 2020 04:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.52542 * 2 1 4 4 C 1.53196 * 109.49569 * 239.92255 * 2 1 3 5 5 N 1.46931 * 108.77486 * 294.68613 * 4 2 1 6 6 C 1.36938 * 120.62899 * 126.37152 * 5 4 2 7 7 H 1.07997 * 120.00370 * 331.86606 * 6 5 4 8 8 C 1.38808 * 119.99673 * 151.87144 * 6 5 4 9 9 N 1.31622 * 119.99945 * 343.04834 * 8 6 5 10 10 Si 1.86797 * 120.00119 * 163.05146 * 8 6 5 11 11 H 1.48506 * 109.46860 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47140 * 119.99412 * 10 8 6 13 13 H 1.48500 * 109.47290 * 240.00019 * 10 8 6 14 14 C 1.46928 * 118.73621 * 306.38931 * 5 4 2 15 15 C 1.53190 * 108.77369 * 53.61074 * 14 5 4 16 16 C 1.53039 * 109.31379 * 305.35921 * 15 14 5 17 17 H 1.08995 * 109.46496 * 301.34986 * 16 15 14 18 18 N 1.46499 * 109.45927 * 181.37262 * 16 15 14 19 19 C 1.34773 * 120.00125 * 84.97524 * 18 16 15 20 20 O 1.21571 * 119.99788 * 0.02562 * 19 18 16 21 21 C 1.47710 * 120.00539 * 179.97438 * 19 18 16 22 22 C 1.41631 * 126.50312 * 180.02562 * 21 19 18 23 23 C 1.34698 * 105.34379 * 179.97438 * 22 21 19 24 24 N 1.35512 * 107.70711 * 0.02562 * 23 22 21 25 25 N 1.28423 * 109.71852 * 359.71633 * 24 23 22 26 26 C 1.46992 * 123.90245 * 179.97438 * 24 23 22 27 27 C 1.53142 * 108.89111 * 342.35483 * 26 24 23 28 28 C 1.53154 * 109.60536 * 51.10712 * 27 26 24 29 29 C 1.50792 * 127.54486 * 180.02562 * 23 22 21 30 30 H 1.09000 * 109.46732 * 299.91808 * 1 2 3 31 31 H 1.09000 * 109.47022 * 59.91580 * 1 2 3 32 32 H 1.09002 * 109.47208 * 179.91525 * 1 2 3 33 33 H 1.09000 * 109.47244 * 180.08360 * 3 2 1 34 34 H 1.08993 * 109.47526 * 300.08580 * 3 2 1 35 35 H 1.09000 * 109.46799 * 60.08634 * 3 2 1 36 36 H 1.09000 * 109.58737 * 174.89643 * 4 2 1 37 37 H 1.09006 * 109.70152 * 54.54135 * 4 2 1 38 38 H 0.97006 * 119.99906 * 180.02562 * 9 8 6 39 39 H 1.09004 * 109.58133 * 293.82119 * 14 5 4 40 40 H 1.08993 * 109.70250 * 173.46876 * 14 5 4 41 41 H 1.09006 * 109.49517 * 185.41246 * 15 14 5 42 42 H 1.08999 * 109.52561 * 65.33419 * 15 14 5 43 43 H 0.97000 * 120.00169 * 264.97821 * 18 16 15 44 44 H 1.08010 * 127.32870 * 359.95628 * 22 21 19 45 45 H 1.09001 * 109.56648 * 102.17083 * 26 24 23 46 46 H 1.08996 * 109.57114 * 222.52895 * 26 24 23 47 47 H 1.09000 * 109.45152 * 171.15041 * 27 26 24 48 48 H 1.09007 * 109.44821 * 291.07155 * 27 26 24 49 49 H 1.08994 * 109.54129 * 50.28223 * 28 27 26 50 50 H 1.09004 * 109.54270 * 170.45687 * 28 27 26 51 51 H 1.09003 * 109.71409 * 284.10132 * 29 23 22 52 52 H 1.09007 * 109.71913 * 44.74158 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2497 5 7 1.6515 -2.1381 -1.1697 6 6 0.9630 -2.7310 -2.1943 7 1 0.3192 -2.1379 -2.8267 8 6 1.0927 -4.0945 -2.4200 9 7 2.1009 -4.7559 -1.8923 10 14 -0.1636 -4.9907 -3.4725 11 1 -1.1916 -4.0280 -3.9436 12 1 0.5166 -5.6014 -4.6429 13 1 -0.8149 -6.0550 -2.6675 14 6 2.0140 -2.9041 0.0306 15 6 1.5030 -2.1559 1.2658 16 6 2.0409 -0.7232 1.2483 17 1 3.1306 -0.7445 1.2351 18 7 1.5810 -0.0145 2.4451 19 6 2.2698 -0.1222 3.5985 20 8 3.2731 -0.8071 3.6455 21 6 1.8064 0.5928 4.8051 22 6 2.4206 0.5777 6.0812 23 6 1.6517 1.3668 6.8561 24 7 0.6334 1.8295 6.0910 25 7 0.7455 1.3706 4.8968 26 6 -0.4213 2.7263 6.5850 27 6 -0.4359 2.6789 8.1156 28 6 0.9793 2.9166 8.6506 29 6 1.8523 1.7002 8.3130 30 1 -0.3633 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3634 -1.0277 -0.0015 33 1 3.1314 1.4410 -0.0015 34 1 1.6774 1.9566 -0.8891 35 1 1.6798 1.9557 0.8908 36 1 3.1275 -0.6463 -1.2981 37 1 1.6028 -0.2736 -2.1403 38 1 2.1917 -5.7087 -2.0503 39 1 3.0980 -3.0043 0.0864 40 1 1.5573 -3.8928 -0.0126 41 1 1.8481 -2.6630 2.1669 42 1 0.4133 -2.1355 1.2545 43 1 0.7806 0.5322 2.4074 44 1 3.3150 0.0463 6.3714 45 1 -0.2195 3.7448 6.2533 46 1 -1.3876 2.4001 6.2004 47 1 -1.1026 3.4525 8.4964 48 1 -0.7890 1.7016 8.4451 49 1 1.3996 3.8085 8.1860 50 1 0.9426 3.0515 9.7316 51 1 1.5560 0.8509 8.9287 52 1 2.9002 1.9390 8.4947 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940824661.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:38 Heat of formation + Delta-G solvation = 30.989710 kcal Electronic energy + Delta-G solvation = -31461.449623 eV Core-core repulsion = 27461.665320 eV Total energy + Delta-G solvation = -3999.784303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.80917 -41.27877 -39.47877 -37.47008 -36.34879 -34.54639 -34.05496 -33.22349 -32.02197 -30.95983 -29.62386 -28.16768 -27.47619 -27.13459 -25.48419 -24.52992 -23.44352 -22.90850 -22.46606 -21.39704 -20.25892 -19.43706 -18.75298 -17.95713 -17.75420 -17.18776 -17.12506 -16.62551 -16.00223 -15.79125 -15.58263 -15.37550 -15.25364 -15.03294 -14.95235 -14.80777 -14.70913 -14.57053 -14.30669 -13.88300 -13.68279 -13.15436 -13.12667 -12.87032 -12.85107 -12.74288 -12.56853 -12.33190 -12.27471 -12.22293 -12.09349 -11.95337 -11.94403 -11.86384 -11.63992 -11.61622 -11.38184 -11.31755 -11.04272 -10.56022 -10.20253 -9.93186 -9.88897 -8.67742 -7.85324 -5.31074 0.50246 1.11505 1.46610 1.48179 1.48604 1.59169 2.16798 2.35810 2.52223 3.24040 3.30405 3.56420 3.62556 3.68904 3.75988 3.80107 3.90638 3.95568 4.04216 4.28680 4.32119 4.37749 4.42528 4.43940 4.51168 4.60934 4.68940 4.69986 4.74771 4.81773 4.83607 4.87534 4.92065 4.99711 5.02083 5.02479 5.04461 5.10549 5.15290 5.20392 5.26432 5.31450 5.32789 5.37978 5.40440 5.52633 5.61100 5.65994 5.72527 5.86719 6.39883 6.47354 6.91510 7.14629 7.18555 7.85319 8.39449 9.21969 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021459 B = 0.002332 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.482266 B =12004.226046 C =12159.219711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.077 4.077 3 C -0.129 4.129 4 C 0.156 3.844 5 N -0.601 5.601 6 C -0.252 4.252 7 H 0.073 0.927 8 C -0.056 4.056 9 N -0.939 5.939 10 Si 0.967 3.033 11 H -0.262 1.262 12 H -0.294 1.294 13 H -0.294 1.294 14 C 0.185 3.815 15 C -0.134 4.134 16 C 0.175 3.825 17 H 0.057 0.943 18 N -0.694 5.694 19 C 0.597 3.403 20 O -0.576 6.576 21 C -0.041 4.041 22 C -0.205 4.205 23 C 0.025 3.975 24 N -0.275 5.275 25 N -0.270 5.270 26 C 0.107 3.893 27 C -0.131 4.131 28 C -0.124 4.124 29 C -0.053 4.053 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.008 0.992 37 H 0.067 0.933 38 H 0.248 0.752 39 H -0.011 1.011 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.411 0.589 44 H 0.158 0.842 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.124 0.876 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.105 0.895 51 H 0.099 0.901 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.336 21.801 23.994 33.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.079 4.079 3 C -0.187 4.187 4 C 0.030 3.970 5 N -0.324 5.324 6 C -0.382 4.382 7 H 0.091 0.909 8 C -0.250 4.250 9 N -0.585 5.585 10 Si 0.795 3.205 11 H -0.186 1.186 12 H -0.221 1.221 13 H -0.221 1.221 14 C 0.059 3.941 15 C -0.174 4.174 16 C 0.070 3.930 17 H 0.075 0.925 18 N -0.345 5.345 19 C 0.383 3.617 20 O -0.454 6.454 21 C -0.199 4.199 22 C -0.233 4.233 23 C -0.100 4.100 24 N -0.066 5.066 25 N -0.107 5.107 26 C -0.011 4.011 27 C -0.169 4.169 28 C -0.161 4.161 29 C -0.092 4.092 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.007 0.993 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.249 0.751 44 H 0.176 0.824 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.143 0.857 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.123 0.877 51 H 0.117 0.883 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.616 21.691 23.362 32.776 hybrid contribution 0.365 -1.515 -0.570 1.660 sum -7.251 20.175 22.792 31.290 Atomic orbital electron populations 1.21713 0.93192 1.01738 1.01536 1.21193 0.97283 0.95702 0.93765 1.21742 1.00569 0.93729 1.02673 1.21086 0.95747 0.84390 0.95802 1.44231 1.65123 1.06873 1.16130 1.19540 1.18156 0.92000 1.08485 0.90919 1.25848 0.98930 0.99135 1.01137 1.70219 1.30255 1.08063 1.49978 0.85209 0.79043 0.78452 0.77759 1.18633 1.22150 1.22063 1.20431 0.94722 0.94924 0.84043 1.22390 1.00931 0.95987 0.98124 1.20702 0.97762 0.90812 0.83685 0.92515 1.45931 1.29703 1.49817 1.09067 1.17279 0.82489 0.79697 0.82215 1.90765 1.27266 1.42362 1.84973 1.21762 0.97578 1.04577 0.96020 1.21495 1.04082 1.05838 0.91865 1.21794 0.90720 0.99835 0.97616 1.46229 1.21004 1.34440 1.04882 1.73320 1.19770 1.12969 1.04619 1.22653 0.88630 0.92873 0.96951 1.21991 0.99220 1.05206 0.90452 1.21728 0.93844 0.96931 1.03627 1.20580 1.02984 1.00216 0.85385 0.92036 0.91819 0.93483 0.93451 0.90762 0.91810 0.97392 0.91474 0.94267 0.99331 0.92455 0.93896 0.91575 0.75103 0.82398 0.87363 0.87405 0.85747 0.90677 0.91050 0.87682 0.88286 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 7.83 71.98 0.56 -3.34 16 2 C -0.08 -2.63 0.56 -52.10 -0.03 -2.66 16 3 C -0.13 -3.55 8.31 71.98 0.60 -2.95 16 4 C 0.16 6.60 5.20 86.36 0.45 7.05 16 5 N -0.60 -30.89 2.43 -699.07 -1.70 -32.59 16 6 C -0.25 -13.90 9.58 84.03 0.81 -13.10 16 7 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16 8 C -0.06 -3.18 4.92 84.86 0.42 -2.76 16 9 N -0.94 -57.72 11.19 21.65 0.24 -57.48 16 10 Si 0.97 45.81 29.59 68.60 2.03 47.84 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 14 C 0.19 9.76 5.30 86.36 0.46 10.21 16 15 C -0.13 -5.87 5.31 30.67 0.16 -5.71 16 16 C 0.17 6.68 1.57 45.02 0.07 6.75 16 17 H 0.06 2.48 7.58 -2.39 -0.02 2.47 16 18 N -0.69 -23.05 4.29 -445.42 -1.91 -24.96 16 19 C 0.60 21.79 7.79 86.75 0.68 22.47 16 20 O -0.58 -25.34 16.59 -3.94 -0.07 -25.40 16 21 C -0.04 -1.25 7.13 42.48 0.30 -0.95 16 22 C -0.20 -5.37 10.75 22.30 0.24 -5.13 16 23 C 0.02 0.46 6.57 41.21 0.27 0.74 16 24 N -0.28 -5.19 3.74 -333.36 -1.25 -6.43 16 25 N -0.27 -7.00 11.72 -48.06 -0.56 -7.57 16 26 C 0.11 0.91 7.17 86.33 0.62 1.53 16 27 C -0.13 -0.39 5.91 30.69 0.18 -0.21 16 28 C -0.12 -0.43 5.98 30.81 0.18 -0.25 16 29 C -0.05 -0.47 6.28 30.04 0.19 -0.28 16 30 H 0.06 1.60 6.58 -2.39 -0.02 1.58 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.76 5.97 -2.39 -0.01 1.75 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.57 7.36 -2.39 -0.02 1.56 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.07 2.70 7.93 -2.38 -0.02 2.68 16 38 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 39 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 40 H 0.06 3.36 6.06 -2.39 -0.01 3.35 16 41 H 0.04 1.93 8.14 -2.38 -0.02 1.92 16 42 H 0.07 2.80 6.34 -2.39 -0.02 2.79 16 43 H 0.41 11.82 6.38 -92.71 -0.59 11.23 16 44 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 45 H 0.11 0.62 8.14 -2.39 -0.02 0.61 16 46 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16 48 H 0.07 0.33 8.11 -2.38 -0.02 0.31 16 49 H 0.07 0.29 8.12 -2.39 -0.02 0.27 16 50 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 51 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -77.21 399.42 3.27 -73.94 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.33 Total: 21.24 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 6.16 Total: 11.41 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -5.17 Total: -129.03 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.07 Total: -25.40 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.21 3.27 -73.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940824661.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.925 kcal (2) G-P(sol) polarization free energy of solvation -77.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds