Wall clock time and date at job start Wed Apr 1 2020 04:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.52111 * 2 1 4 4 C 1.52758 * 109.56365 * 240.04719 * 2 1 3 5 5 N 1.46928 * 109.00696 * 185.55200 * 4 2 1 6 6 C 1.36940 * 120.62942 * 233.58139 * 5 4 2 7 7 H 1.07997 * 119.99487 * 152.22685 * 6 5 4 8 8 C 1.38809 * 120.00020 * 332.22646 * 6 5 4 9 9 N 1.31625 * 120.00314 * 335.02519 * 8 6 5 10 10 Si 1.86803 * 119.99831 * 155.01934 * 8 6 5 11 11 H 1.48499 * 109.47125 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46931 * 120.00189 * 10 8 6 13 13 H 1.48496 * 109.47273 * 240.00296 * 10 8 6 14 14 C 1.46920 * 118.73646 * 53.31210 * 5 4 2 15 15 C 1.53187 * 108.77436 * 306.63846 * 14 5 4 16 16 C 1.53035 * 109.49646 * 120.08231 * 2 1 3 17 17 H 1.08996 * 109.46355 * 61.29677 * 16 2 1 18 18 N 1.46510 * 109.45801 * 301.33541 * 16 2 1 19 19 C 1.34772 * 119.99685 * 154.93534 * 18 16 2 20 20 O 1.21578 * 120.00028 * 359.97438 * 19 18 16 21 21 C 1.47706 * 120.00049 * 179.97438 * 19 18 16 22 22 C 1.41637 * 126.50357 * 179.97438 * 21 19 18 23 23 C 1.34695 * 105.34243 * 179.97438 * 22 21 19 24 24 N 1.35501 * 107.71033 * 0.02609 * 23 22 21 25 25 N 1.28424 * 109.72005 * 359.71042 * 24 23 22 26 26 C 1.46998 * 123.90519 * 179.97438 * 24 23 22 27 27 C 1.53139 * 108.88880 * 342.34822 * 26 24 23 28 28 C 1.53157 * 109.60721 * 51.10909 * 27 26 24 29 29 C 1.50798 * 127.54116 * 180.02562 * 23 22 21 30 30 H 1.08993 * 109.46867 * 299.91856 * 1 2 3 31 31 H 1.09000 * 109.47068 * 59.91710 * 1 2 3 32 32 H 1.08999 * 109.46973 * 179.91494 * 1 2 3 33 33 H 1.09003 * 109.46779 * 180.08211 * 3 2 1 34 34 H 1.09000 * 109.47414 * 300.07927 * 3 2 1 35 35 H 1.08998 * 109.47633 * 60.08447 * 3 2 1 36 36 H 1.09007 * 109.51083 * 65.67088 * 4 2 1 37 37 H 1.08998 * 109.43404 * 305.38690 * 4 2 1 38 38 H 0.96998 * 119.99686 * 354.25090 * 9 8 6 39 39 H 1.08996 * 109.59199 * 66.42825 * 14 5 4 40 40 H 1.09010 * 109.58411 * 186.71583 * 14 5 4 41 41 H 1.09009 * 109.49772 * 174.58793 * 15 14 5 42 42 H 1.09000 * 109.50241 * 294.65145 * 15 14 5 43 43 H 0.96993 * 119.99574 * 334.93301 * 18 16 2 44 44 H 1.08005 * 127.32738 * 359.97438 * 22 21 19 45 45 H 1.09009 * 109.56565 * 102.16772 * 26 24 23 46 46 H 1.08996 * 109.57242 * 222.40239 * 26 24 23 47 47 H 1.09002 * 109.45371 * 171.15019 * 27 26 24 48 48 H 1.09002 * 109.45087 * 291.09537 * 27 26 24 49 49 H 1.09001 * 109.54223 * 50.27956 * 28 27 26 50 50 H 1.08996 * 109.54389 * 170.45631 * 28 27 26 51 51 H 1.09003 * 109.72102 * 284.10166 * 29 23 22 52 52 H 1.09001 * 109.71882 * 44.74734 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0416 -0.7187 -1.2471 5 7 3.5047 -0.8291 -1.1696 6 6 4.2937 -0.3784 -2.1941 7 1 5.2998 -0.0415 -1.9928 8 6 3.8002 -0.3547 -3.4913 9 7 2.8306 -1.1729 -3.8417 10 14 4.5123 0.8386 -4.7397 11 1 5.5841 1.6431 -4.1001 12 1 5.0793 0.0791 -5.8829 13 1 3.4398 1.7418 -5.2288 14 6 4.1053 -1.4267 0.0307 15 6 3.5709 -0.6950 1.2659 16 6 2.0408 -0.7231 1.2483 17 1 1.6968 -1.7572 1.2353 18 7 1.5265 -0.0529 2.4453 19 6 1.3972 -0.7385 3.5983 20 8 1.7069 -1.9133 3.6451 21 6 0.8792 -0.0628 4.8053 22 6 0.6877 -0.6470 6.0813 23 6 0.2033 0.3420 6.8570 24 7 0.1082 1.4566 6.0923 25 7 0.5128 1.2004 4.9007 26 6 -0.3830 2.7508 6.5868 27 6 -1.1516 2.5235 7.8918 28 6 -0.2954 1.6960 8.8550 29 6 -0.1763 0.2645 8.3143 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1314 1.4410 -0.0015 34 1 1.6773 1.9567 -0.8892 35 1 1.6797 1.9558 0.8907 36 1 1.7646 -0.1495 -2.1346 37 1 1.6022 -1.7149 -1.2975 38 1 2.5177 -1.8486 -3.2201 39 1 3.8376 -2.4818 0.0867 40 1 5.1898 -1.3268 -0.0150 41 1 3.9335 -1.1897 2.1671 42 1 3.9165 0.3387 1.2544 43 1 1.2791 0.8842 2.4078 44 1 0.8875 -1.6682 6.3707 45 1 0.4612 3.4153 6.7713 46 1 -1.0443 3.1980 5.8448 47 1 -1.3843 3.4856 8.3482 48 1 -2.0775 1.9891 7.6793 49 1 0.6968 2.1403 8.9346 50 1 -0.7666 1.6775 9.8377 51 1 -1.1316 -0.2500 8.4187 52 1 0.5940 -0.2735 8.8669 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940824662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:43 Heat of formation + Delta-G solvation = 48.666998 kcal Electronic energy + Delta-G solvation = -31558.418913 eV Core-core repulsion = 27559.401155 eV Total energy + Delta-G solvation = -3999.017759 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.97205 -39.86731 -38.07837 -36.95901 -34.71298 -33.38782 -32.86799 -32.08652 -30.66606 -29.10229 -28.93936 -26.78140 -26.09002 -25.51630 -24.48750 -23.35318 -22.45164 -21.75108 -20.67307 -20.34838 -19.32180 -18.09233 -17.41783 -17.10218 -16.81290 -16.33456 -15.66252 -15.04855 -14.72517 -14.68657 -14.48590 -14.43726 -14.17338 -13.81366 -13.64502 -13.60113 -13.54319 -13.26460 -13.06705 -12.61894 -12.43030 -12.28059 -11.82438 -11.74121 -11.65003 -11.55087 -11.45511 -11.40715 -10.91324 -10.87802 -10.84942 -10.62544 -10.35719 -10.25326 -10.04567 -9.98416 -9.86931 -9.68914 -9.23132 -9.19963 -9.10692 -8.59414 -8.30341 -6.81952 -6.01336 -3.16746 1.53746 1.99565 2.16428 3.41846 3.53856 3.56479 3.57292 3.69834 3.83130 4.05253 4.12600 4.26069 4.56493 4.63418 4.65748 4.79519 4.92094 5.05837 5.11426 5.15069 5.21721 5.23285 5.28108 5.40815 5.43665 5.50851 5.52355 5.56064 5.60328 5.75808 5.86219 5.93943 6.05095 6.10202 6.20930 6.27056 6.29938 6.39793 6.45208 6.48547 6.56102 6.65383 6.67160 6.80152 6.88478 6.92498 6.98639 7.16251 7.22436 7.65872 7.93096 8.07076 8.46126 8.63208 9.17535 9.90420 10.35563 11.27308 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.002342 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.639532 B =11953.753550 C =12374.034213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 C -0.128 4.128 4 C 0.166 3.834 5 N -0.596 5.596 6 C -0.344 4.344 7 H 0.056 0.944 8 C -0.025 4.025 9 N -0.918 5.918 10 Si 1.066 2.934 11 H -0.293 1.293 12 H -0.295 1.295 13 H -0.291 1.291 14 C 0.150 3.850 15 C -0.143 4.143 16 C 0.164 3.836 17 H 0.082 0.918 18 N -0.706 5.706 19 C 0.600 3.400 20 O -0.536 6.536 21 C -0.010 4.010 22 C -0.176 4.176 23 C 0.009 3.991 24 N -0.283 5.283 25 N -0.261 5.261 26 C 0.121 3.879 27 C -0.136 4.136 28 C -0.127 4.127 29 C -0.051 4.051 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.033 0.967 36 H 0.085 0.915 37 H 0.017 0.983 38 H 0.270 0.730 39 H 0.018 0.982 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.402 0.598 44 H 0.161 0.839 45 H 0.092 0.908 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 8.884 26.358 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C -0.186 4.186 4 C 0.039 3.961 5 N -0.320 5.320 6 C -0.473 4.473 7 H 0.074 0.926 8 C -0.227 4.227 9 N -0.558 5.558 10 Si 0.897 3.103 11 H -0.219 1.219 12 H -0.222 1.222 13 H -0.217 1.217 14 C 0.023 3.977 15 C -0.183 4.183 16 C 0.060 3.940 17 H 0.100 0.900 18 N -0.357 5.357 19 C 0.383 3.617 20 O -0.412 6.412 21 C -0.171 4.171 22 C -0.204 4.204 23 C -0.114 4.114 24 N -0.073 5.073 25 N -0.096 5.096 26 C 0.001 3.999 27 C -0.174 4.174 28 C -0.165 4.165 29 C -0.090 4.090 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.238 0.762 44 H 0.179 0.821 45 H 0.110 0.890 46 H 0.119 0.881 47 H 0.113 0.887 48 H 0.096 0.904 49 H 0.090 0.910 50 H 0.100 0.900 51 H 0.105 0.895 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.791 9.727 24.189 27.849 hybrid contribution 0.121 -0.759 2.033 2.174 sum -9.671 8.967 26.222 29.352 Atomic orbital electron populations 1.21792 0.95208 1.01421 1.00999 1.21341 0.94560 0.96900 0.96477 1.21758 1.02694 0.94473 0.99630 1.20910 0.84145 0.96504 0.94567 1.44115 1.01075 1.69761 1.17006 1.19989 0.99024 1.40623 0.87651 0.92645 1.25779 0.99723 1.00945 0.96207 1.70715 1.30747 1.16811 1.37545 0.83517 0.75349 0.75959 0.75523 1.21894 1.22205 1.21749 1.20865 0.96786 0.94052 0.85999 1.22443 0.94732 1.01722 0.99417 1.21002 0.93868 0.96733 0.82359 0.90020 1.46167 1.64926 1.14729 1.09851 1.16905 0.77663 0.85643 0.81451 1.90786 1.50752 1.15325 1.84300 1.22083 1.08021 0.90642 0.96335 1.21316 1.06750 1.00558 0.91808 1.21248 1.06629 0.87569 0.95975 1.45693 1.45568 1.10092 1.05924 1.73420 1.15619 1.17627 1.02905 1.22127 0.99850 0.80994 0.96908 1.21936 0.99205 1.02441 0.93847 1.21702 1.00843 0.94829 0.99134 1.20345 1.02887 0.97805 0.87938 0.93463 0.92499 0.93028 0.90994 0.92822 0.94836 0.89681 0.96465 0.91928 0.96372 0.92439 0.92581 0.91733 0.76224 0.82121 0.88978 0.88139 0.88706 0.90351 0.91042 0.90048 0.89503 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.31 37.16 0.31 -1.95 16 2 C -0.09 -1.69 0.56 -154.61 -0.09 -1.78 16 3 C -0.13 -2.31 7.82 37.16 0.29 -2.02 16 4 C 0.17 3.85 3.33 -3.93 -0.01 3.83 16 5 N -0.60 -14.86 2.30 -172.59 -0.40 -15.26 16 6 C -0.34 -9.51 9.49 -15.06 -0.14 -9.65 16 7 H 0.06 1.56 7.94 -52.49 -0.42 1.14 16 8 C -0.02 -0.70 4.68 -17.43 -0.08 -0.78 16 9 N -0.92 -27.45 12.41 55.49 0.69 -26.76 16 10 Si 1.07 25.42 29.99 -169.99 -5.10 20.32 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.15 3.31 6.52 -3.72 -0.02 3.28 16 15 C -0.14 -2.76 5.31 -26.61 -0.14 -2.90 16 16 C 0.16 3.03 1.57 -67.88 -0.11 2.92 16 17 H 0.08 1.68 7.57 -51.93 -0.39 1.28 16 18 N -0.71 -11.60 4.29 -54.75 -0.23 -11.84 16 19 C 0.60 10.38 7.79 -12.39 -0.10 10.29 16 20 O -0.54 -10.83 16.59 5.30 0.09 -10.74 16 21 C -0.01 -0.15 7.13 -82.69 -0.59 -0.74 16 22 C -0.18 -2.25 10.75 -39.54 -0.43 -2.67 16 23 C 0.01 0.09 6.57 -82.18 -0.54 -0.45 16 24 N -0.28 -2.93 3.74 -56.71 -0.21 -3.14 16 25 N -0.26 -3.51 11.72 33.46 0.39 -3.11 16 26 C 0.12 0.71 7.17 -3.70 -0.03 0.68 16 27 C -0.14 -0.47 5.91 -26.58 -0.16 -0.62 16 28 C -0.13 -0.47 5.98 -26.40 -0.16 -0.63 16 29 C -0.05 -0.29 6.28 -27.59 -0.17 -0.46 16 30 H 0.05 0.70 7.36 -51.93 -0.38 0.32 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.44 5.97 -51.93 -0.31 1.13 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.51 6.58 -51.93 -0.34 0.17 16 36 H 0.08 2.21 6.30 -51.93 -0.33 1.88 16 37 H 0.02 0.42 7.87 -51.93 -0.41 0.01 16 38 H 0.27 8.17 6.71 -40.82 -0.27 7.89 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.26 7.93 -51.92 -0.41 0.85 16 41 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 42 H 0.06 1.24 6.34 -51.93 -0.33 0.91 16 43 H 0.40 6.09 6.39 -40.82 -0.26 5.83 16 44 H 0.16 1.89 8.06 -52.48 -0.42 1.47 16 45 H 0.09 0.45 8.14 -51.92 -0.42 0.02 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 48 H 0.08 0.30 8.11 -51.93 -0.42 -0.12 16 49 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 50 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 51 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -33.67 398.35 -9.50 -43.17 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.57 Total: 4.99 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.16 Total: -3.63 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.24 Total: -60.10 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.10 Total: 20.32 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.67 -9.50 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940824662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.836 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds