Wall clock time and date at job start Wed Apr 1 2020 04:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.52111 * 2 1 4 4 C 1.52758 * 109.56365 * 240.04719 * 2 1 3 5 5 N 1.46928 * 109.00696 * 185.55200 * 4 2 1 6 6 C 1.36940 * 120.62942 * 233.58139 * 5 4 2 7 7 H 1.07997 * 119.99487 * 152.22685 * 6 5 4 8 8 C 1.38809 * 120.00020 * 332.22646 * 6 5 4 9 9 N 1.31625 * 120.00314 * 335.02519 * 8 6 5 10 10 Si 1.86803 * 119.99831 * 155.01934 * 8 6 5 11 11 H 1.48499 * 109.47125 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46931 * 120.00189 * 10 8 6 13 13 H 1.48496 * 109.47273 * 240.00296 * 10 8 6 14 14 C 1.46920 * 118.73646 * 53.31210 * 5 4 2 15 15 C 1.53187 * 108.77436 * 306.63846 * 14 5 4 16 16 C 1.53035 * 109.49646 * 120.08231 * 2 1 3 17 17 H 1.08996 * 109.46355 * 61.29677 * 16 2 1 18 18 N 1.46510 * 109.45801 * 301.33541 * 16 2 1 19 19 C 1.34772 * 119.99685 * 154.93534 * 18 16 2 20 20 O 1.21578 * 120.00028 * 359.97438 * 19 18 16 21 21 C 1.47706 * 120.00049 * 179.97438 * 19 18 16 22 22 C 1.41637 * 126.50357 * 179.97438 * 21 19 18 23 23 C 1.34695 * 105.34243 * 179.97438 * 22 21 19 24 24 N 1.35501 * 107.71033 * 0.02609 * 23 22 21 25 25 N 1.28424 * 109.72005 * 359.71042 * 24 23 22 26 26 C 1.46998 * 123.90519 * 179.97438 * 24 23 22 27 27 C 1.53139 * 108.88880 * 342.34822 * 26 24 23 28 28 C 1.53157 * 109.60721 * 51.10909 * 27 26 24 29 29 C 1.50798 * 127.54116 * 180.02562 * 23 22 21 30 30 H 1.08993 * 109.46867 * 299.91856 * 1 2 3 31 31 H 1.09000 * 109.47068 * 59.91710 * 1 2 3 32 32 H 1.08999 * 109.46973 * 179.91494 * 1 2 3 33 33 H 1.09003 * 109.46779 * 180.08211 * 3 2 1 34 34 H 1.09000 * 109.47414 * 300.07927 * 3 2 1 35 35 H 1.08998 * 109.47633 * 60.08447 * 3 2 1 36 36 H 1.09007 * 109.51083 * 65.67088 * 4 2 1 37 37 H 1.08998 * 109.43404 * 305.38690 * 4 2 1 38 38 H 0.96998 * 119.99686 * 354.25090 * 9 8 6 39 39 H 1.08996 * 109.59199 * 66.42825 * 14 5 4 40 40 H 1.09010 * 109.58411 * 186.71583 * 14 5 4 41 41 H 1.09009 * 109.49772 * 174.58793 * 15 14 5 42 42 H 1.09000 * 109.50241 * 294.65145 * 15 14 5 43 43 H 0.96993 * 119.99574 * 334.93301 * 18 16 2 44 44 H 1.08005 * 127.32738 * 359.97438 * 22 21 19 45 45 H 1.09009 * 109.56565 * 102.16772 * 26 24 23 46 46 H 1.08996 * 109.57242 * 222.40239 * 26 24 23 47 47 H 1.09002 * 109.45371 * 171.15019 * 27 26 24 48 48 H 1.09002 * 109.45087 * 291.09537 * 27 26 24 49 49 H 1.09001 * 109.54223 * 50.27956 * 28 27 26 50 50 H 1.08996 * 109.54389 * 170.45631 * 28 27 26 51 51 H 1.09003 * 109.72102 * 284.10166 * 29 23 22 52 52 H 1.09001 * 109.71882 * 44.74734 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0416 -0.7187 -1.2471 5 7 3.5047 -0.8291 -1.1696 6 6 4.2937 -0.3784 -2.1941 7 1 5.2998 -0.0415 -1.9928 8 6 3.8002 -0.3547 -3.4913 9 7 2.8306 -1.1729 -3.8417 10 14 4.5123 0.8386 -4.7397 11 1 5.5841 1.6431 -4.1001 12 1 5.0793 0.0791 -5.8829 13 1 3.4398 1.7418 -5.2288 14 6 4.1053 -1.4267 0.0307 15 6 3.5709 -0.6950 1.2659 16 6 2.0408 -0.7231 1.2483 17 1 1.6968 -1.7572 1.2353 18 7 1.5265 -0.0529 2.4453 19 6 1.3972 -0.7385 3.5983 20 8 1.7069 -1.9133 3.6451 21 6 0.8792 -0.0628 4.8053 22 6 0.6877 -0.6470 6.0813 23 6 0.2033 0.3420 6.8570 24 7 0.1082 1.4566 6.0923 25 7 0.5128 1.2004 4.9007 26 6 -0.3830 2.7508 6.5868 27 6 -1.1516 2.5235 7.8918 28 6 -0.2954 1.6960 8.8550 29 6 -0.1763 0.2645 8.3143 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1314 1.4410 -0.0015 34 1 1.6773 1.9567 -0.8892 35 1 1.6797 1.9558 0.8907 36 1 1.7646 -0.1495 -2.1346 37 1 1.6022 -1.7149 -1.2975 38 1 2.5177 -1.8486 -3.2201 39 1 3.8376 -2.4818 0.0867 40 1 5.1898 -1.3268 -0.0150 41 1 3.9335 -1.1897 2.1671 42 1 3.9165 0.3387 1.2544 43 1 1.2791 0.8842 2.4078 44 1 0.8875 -1.6682 6.3707 45 1 0.4612 3.4153 6.7713 46 1 -1.0443 3.1980 5.8448 47 1 -1.3843 3.4856 8.3482 48 1 -2.0775 1.9891 7.6793 49 1 0.6968 2.1403 8.9346 50 1 -0.7666 1.6775 9.8377 51 1 -1.1316 -0.2500 8.4187 52 1 0.5940 -0.2735 8.8669 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940824662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:41 Heat of formation + Delta-G solvation = 28.216817 kcal Electronic energy + Delta-G solvation = -31559.305700 eV Core-core repulsion = 27559.401155 eV Total energy + Delta-G solvation = -3999.904545 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.82937 -41.38603 -39.60655 -37.48774 -36.52737 -34.41111 -34.07855 -33.94404 -31.70538 -30.69320 -29.63738 -28.27840 -27.80605 -27.01885 -25.46719 -24.53536 -23.47712 -22.93110 -22.46978 -21.43043 -20.29384 -19.61460 -19.33076 -18.01460 -17.79068 -17.26982 -17.07568 -16.35720 -16.04980 -15.98963 -15.51311 -15.45795 -15.26916 -15.11371 -15.06306 -14.96254 -14.75620 -14.57334 -14.28905 -14.02127 -13.71346 -13.61737 -13.03418 -12.96277 -12.88384 -12.70977 -12.55271 -12.47744 -12.24543 -12.16112 -11.96575 -11.88500 -11.87742 -11.82457 -11.72646 -11.63925 -11.43191 -11.35413 -11.06944 -10.45886 -10.25184 -9.95451 -9.93725 -8.92764 -8.22961 -5.37332 0.47574 1.09939 1.45938 1.59600 1.67072 1.83299 2.11252 2.32394 2.66312 3.22085 3.22433 3.49049 3.56034 3.59265 3.72930 3.78560 3.84684 3.89118 3.96252 4.21652 4.25975 4.30023 4.30777 4.40912 4.46307 4.49655 4.52938 4.67353 4.70552 4.73051 4.74047 4.79728 4.86301 4.86453 4.92247 4.98128 5.01252 5.03231 5.08109 5.11270 5.13986 5.18965 5.25524 5.29515 5.31167 5.33989 5.44430 5.56937 5.84807 5.86761 6.40551 6.42493 6.88841 7.05376 7.13381 7.78777 8.23563 9.02443 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.002342 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.639532 B =11953.753550 C =12374.034213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 C -0.121 4.121 4 C 0.175 3.825 5 N -0.610 5.610 6 C -0.346 4.346 7 H 0.050 0.950 8 C -0.074 4.074 9 N -0.943 5.943 10 Si 1.116 2.884 11 H -0.274 1.274 12 H -0.294 1.294 13 H -0.285 1.285 14 C 0.148 3.852 15 C -0.128 4.128 16 C 0.175 3.825 17 H 0.059 0.941 18 N -0.695 5.695 19 C 0.600 3.400 20 O -0.573 6.573 21 C -0.041 4.041 22 C -0.203 4.203 23 C 0.025 3.975 24 N -0.275 5.275 25 N -0.272 5.272 26 C 0.106 3.894 27 C -0.130 4.130 28 C -0.125 4.125 29 C -0.053 4.053 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.057 0.943 37 H -0.004 1.004 38 H 0.253 0.747 39 H 0.008 0.992 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.411 0.589 44 H 0.160 0.840 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.124 0.876 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.105 0.895 51 H 0.101 0.899 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.849 11.757 29.277 33.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.083 4.083 3 C -0.178 4.178 4 C 0.048 3.952 5 N -0.333 5.333 6 C -0.476 4.476 7 H 0.068 0.932 8 C -0.270 4.270 9 N -0.585 5.585 10 Si 0.941 3.059 11 H -0.199 1.199 12 H -0.221 1.221 13 H -0.212 1.212 14 C 0.021 3.979 15 C -0.168 4.168 16 C 0.071 3.929 17 H 0.077 0.923 18 N -0.346 5.346 19 C 0.386 3.614 20 O -0.451 6.451 21 C -0.200 4.200 22 C -0.231 4.231 23 C -0.100 4.100 24 N -0.066 5.066 25 N -0.109 5.109 26 C -0.012 4.012 27 C -0.168 4.168 28 C -0.162 4.162 29 C -0.091 4.091 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.014 0.986 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.249 0.751 44 H 0.178 0.822 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.142 0.858 48 H 0.095 0.905 49 H 0.088 0.912 50 H 0.124 0.876 51 H 0.119 0.881 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.874 12.630 27.147 31.855 hybrid contribution 0.441 -1.661 1.254 2.127 sum -10.433 10.970 28.401 32.184 Atomic orbital electron populations 1.21739 0.93195 1.01567 1.02305 1.21156 0.96088 0.96922 0.94150 1.21671 1.01304 0.93768 1.01045 1.20738 0.83331 0.95415 0.95695 1.44299 1.01671 1.70160 1.17202 1.20199 0.99195 1.39743 0.88451 0.93175 1.27120 0.99791 1.01819 0.98308 1.70843 1.32494 1.17795 1.37364 0.82845 0.75307 0.74227 0.73499 1.19886 1.22104 1.21184 1.20931 0.96791 0.93784 0.86345 1.22248 0.95281 1.01484 0.97809 1.20659 0.93232 0.95769 0.83252 0.92289 1.45923 1.64754 1.14922 1.09009 1.17241 0.76832 0.85249 0.82085 1.90756 1.52412 1.16985 1.84987 1.21759 1.10454 0.91758 0.96038 1.21494 1.08414 1.01512 0.91707 1.21810 1.04176 0.86422 0.97562 1.46224 1.43734 1.11586 1.05006 1.73331 1.16058 1.16768 1.04695 1.22652 1.00872 0.79264 0.98371 1.21984 0.98457 1.03960 0.92391 1.21733 1.01149 0.93135 1.00190 1.20581 1.03763 0.99830 0.84961 0.91177 0.92063 0.93568 0.93013 0.93199 0.91574 0.92476 0.98646 0.93686 0.97383 0.92530 0.92250 0.91138 0.75135 0.82230 0.87603 0.87347 0.85814 0.90505 0.91210 0.87639 0.88121 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.31 71.98 0.60 -3.64 16 2 C -0.08 -3.05 0.56 -52.25 -0.03 -3.08 16 3 C -0.12 -4.22 7.82 71.98 0.56 -3.66 16 4 C 0.17 8.43 3.33 86.22 0.29 8.72 16 5 N -0.61 -31.37 2.30 -699.94 -1.61 -32.98 16 6 C -0.35 -19.55 9.49 84.03 0.80 -18.76 16 7 H 0.05 2.85 7.94 -2.91 -0.02 2.83 16 8 C -0.07 -4.25 4.68 84.86 0.40 -3.86 16 9 N -0.94 -58.13 12.41 21.65 0.27 -57.86 16 10 Si 1.12 51.60 29.99 68.60 2.06 53.66 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 13 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.15 6.74 6.52 86.36 0.56 7.30 16 15 C -0.13 -5.01 5.31 30.67 0.16 -4.85 16 16 C 0.18 6.57 1.57 45.02 0.07 6.64 16 17 H 0.06 2.51 7.57 -2.39 -0.02 2.50 16 18 N -0.70 -22.58 4.29 -445.40 -1.91 -24.49 16 19 C 0.60 21.00 7.79 86.75 0.68 21.68 16 20 O -0.57 -23.90 16.59 -3.96 -0.07 -23.97 16 21 C -0.04 -1.23 7.13 42.48 0.30 -0.93 16 22 C -0.20 -5.11 10.75 22.30 0.24 -4.87 16 23 C 0.02 0.45 6.57 41.21 0.27 0.72 16 24 N -0.28 -5.08 3.74 -333.34 -1.25 -6.33 16 25 N -0.27 -6.94 11.72 -48.06 -0.56 -7.50 16 26 C 0.11 0.90 7.17 86.33 0.62 1.52 16 27 C -0.13 -0.35 5.91 30.69 0.18 -0.17 16 28 C -0.12 -0.40 5.98 30.81 0.18 -0.22 16 29 C -0.05 -0.43 6.28 30.04 0.19 -0.24 16 30 H 0.07 1.97 7.36 -2.39 -0.02 1.95 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 2.03 5.97 -2.39 -0.01 2.01 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.86 6.58 -2.39 -0.02 1.85 16 36 H 0.06 3.08 6.30 -2.38 -0.02 3.06 16 37 H 0.00 -0.23 7.87 -2.39 -0.02 -0.25 16 38 H 0.25 16.08 6.71 -92.71 -0.62 15.45 16 39 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.06 2.55 7.93 -2.38 -0.02 2.53 16 41 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.07 2.69 6.34 -2.39 -0.02 2.67 16 43 H 0.41 11.84 6.39 -92.71 -0.59 11.24 16 44 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 45 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 48 H 0.08 0.28 8.11 -2.39 -0.02 0.26 16 49 H 0.07 0.29 8.12 -2.39 -0.02 0.27 16 50 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 51 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -76.33 398.35 3.48 -72.84 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.47 Total: 24.30 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 6.07 Total: 2.33 kcal Atomic # 7 Polarization: -124.10 SS G_CDS: -5.06 Total: -129.16 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.07 Total: -23.97 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.06 Total: 53.66 kcal Total: -76.33 3.48 -72.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940824662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.060 kcal (2) G-P(sol) polarization free energy of solvation -76.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds