Wall clock time and date at job start Wed Apr 1 2020 04:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.49698 * 2 1 4 4 C 1.53192 * 109.49590 * 239.90235 * 2 1 3 5 5 N 1.46920 * 108.77405 * 185.41315 * 4 2 1 6 6 C 1.36945 * 120.63306 * 233.63098 * 5 4 2 7 7 H 1.07999 * 119.99621 * 27.99171 * 6 5 4 8 8 C 1.38811 * 120.00211 * 207.99184 * 6 5 4 9 9 N 1.31623 * 120.00001 * 17.53564 * 8 6 5 10 10 Si 1.86800 * 119.99955 * 197.53162 * 8 6 5 11 11 H 1.48501 * 109.46756 * 94.06999 * 10 8 6 12 12 H 1.48499 * 109.47060 * 214.06680 * 10 8 6 13 13 H 1.48493 * 109.46984 * 334.06759 * 10 8 6 14 14 C 1.46927 * 118.73994 * 53.61316 * 5 4 2 15 15 C 1.53194 * 108.77427 * 306.38970 * 14 5 4 16 16 C 1.53043 * 109.49437 * 120.06868 * 2 1 3 17 17 H 1.08994 * 109.46099 * 61.30945 * 16 2 1 18 18 N 1.46496 * 109.46003 * 301.33198 * 16 2 1 19 19 C 1.34780 * 119.99918 * 155.00084 * 18 16 2 20 20 O 1.21286 * 119.99772 * 0.02562 * 19 18 16 21 21 C 1.50697 * 119.99860 * 180.02562 * 19 18 16 22 22 H 1.09001 * 109.50035 * 59.93965 * 21 19 18 23 23 C 1.53123 * 109.49573 * 180.02562 * 21 19 18 24 24 C 1.53278 * 109.70195 * 189.87144 * 23 21 19 25 25 N 1.46473 * 108.68936 * 309.22412 * 24 23 21 26 26 C 1.34409 * 128.44166 * 197.35639 * 25 24 23 27 27 N 1.30788 * 108.55081 * 179.81254 * 26 25 24 28 28 C 1.34429 * 109.32142 * 0.04908 * 27 26 25 29 29 C 1.33858 * 107.79515 * 0.02562 * 28 27 26 30 30 C 1.50713 * 128.67461 * 179.67784 * 29 28 27 31 31 H 1.09004 * 109.46922 * 299.93374 * 1 2 3 32 32 H 1.08995 * 109.46762 * 59.93113 * 1 2 3 33 33 H 1.09002 * 109.46995 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46635 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47449 * 300.06557 * 3 2 1 36 36 H 1.09003 * 109.46896 * 60.06990 * 3 2 1 37 37 H 1.08996 * 109.59147 * 305.20390 * 4 2 1 38 38 H 1.09005 * 109.58352 * 65.63152 * 4 2 1 39 39 H 0.96994 * 119.99565 * 180.02562 * 9 8 6 40 40 H 1.09004 * 109.58532 * 66.17852 * 14 5 4 41 41 H 1.08996 * 109.58813 * 186.46013 * 14 5 4 42 42 H 1.09000 * 109.49741 * 294.68100 * 15 14 5 43 43 H 1.08997 * 109.49471 * 174.58298 * 15 14 5 44 44 H 0.97005 * 120.00259 * 335.00632 * 18 16 2 45 45 H 1.08992 * 109.43476 * 69.79454 * 23 21 19 46 46 H 1.09004 * 109.43011 * 309.93885 * 23 21 19 47 47 H 1.08996 * 109.60270 * 189.46254 * 24 23 21 48 48 H 1.09005 * 109.73633 * 69.06169 * 24 23 21 49 49 H 1.07998 * 125.72752 * 359.84348 * 26 25 24 50 50 H 1.07999 * 126.09589 * 179.97438 * 28 27 26 51 51 H 1.09001 * 109.74798 * 315.62591 * 30 29 28 52 52 H 1.08998 * 109.74763 * 76.34810 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 3.5046 -0.8295 -1.1694 6 6 4.2937 -0.3791 -2.1940 7 1 3.9488 0.4243 -2.8281 8 6 5.5366 -0.9552 -2.4177 9 7 5.8205 -2.1304 -1.8974 10 14 6.8063 -0.0626 -3.4572 11 1 7.7030 0.7258 -2.5743 12 1 7.6079 -1.0539 -4.2187 13 1 6.1173 0.8497 -4.4048 14 6 4.1053 -1.4268 0.0311 15 6 3.5709 -0.6948 1.2662 16 6 2.0408 -0.7228 1.2485 17 1 1.6969 -1.7570 1.2356 18 7 1.5266 -0.0524 2.4453 19 6 1.3985 -0.7374 3.5989 20 8 1.7094 -1.9088 3.6463 21 6 0.8690 -0.0479 4.8298 22 1 -0.1352 0.3275 4.6330 23 6 0.8244 -1.0423 5.9934 24 6 0.0636 -0.4247 7.1720 25 7 0.6216 0.9012 7.4478 26 6 0.4895 1.6492 8.5567 27 7 1.1517 2.7644 8.3876 28 6 1.7229 2.7624 7.1707 29 6 1.4024 1.6097 6.5702 30 6 1.7870 1.1249 5.1960 31 1 -0.3633 0.5128 0.8906 32 1 -0.3633 0.5149 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1307 1.4417 -0.0005 35 1 1.6767 1.9566 -0.8893 36 1 1.6786 1.9559 0.8906 37 1 1.6053 -1.7219 -1.2976 38 1 1.7638 -0.1584 -2.1388 39 1 6.6892 -2.5327 -2.0534 40 1 3.8375 -2.4819 0.0873 41 1 5.1897 -1.3270 -0.0146 42 1 3.9160 0.3391 1.2540 43 1 3.9334 -1.1893 2.1673 44 1 1.2782 0.8846 2.4074 45 1 1.8411 -1.2829 6.3040 46 1 0.3188 -1.9532 5.6727 47 1 0.1753 -1.0586 8.0517 48 1 -0.9928 -0.3317 6.9201 49 1 -0.0691 1.3753 9.4394 50 1 2.3311 3.5505 6.7520 51 1 1.6667 1.9323 4.4736 52 1 2.8230 0.7862 5.2016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940846563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:19 Heat of formation + Delta-G solvation = 18.251534 kcal Electronic energy + Delta-G solvation = -31835.373908 eV Core-core repulsion = 27835.037236 eV Total energy + Delta-G solvation = -4000.336672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.26487 -41.44406 -39.78738 -37.21138 -36.32230 -34.65596 -33.93939 -33.18414 -31.64722 -31.40162 -29.01404 -28.11168 -27.45612 -26.81994 -25.60758 -24.35319 -23.19435 -22.45511 -22.38838 -21.24217 -20.08236 -19.55709 -18.78488 -18.08517 -17.95686 -17.16125 -16.79875 -16.50816 -16.19719 -15.74676 -15.54231 -15.32978 -15.05093 -14.98260 -14.91499 -14.75766 -14.69702 -14.48439 -14.14989 -14.03348 -13.81934 -13.14848 -13.10079 -12.96659 -12.89132 -12.81397 -12.71602 -12.52386 -12.30650 -12.26775 -12.15246 -12.07866 -12.04406 -11.94305 -11.58533 -11.32738 -11.17610 -10.98622 -10.68246 -10.55207 -10.42368 -9.94014 -9.28430 -8.67952 -7.86337 -5.31540 1.13874 1.47057 1.48639 1.57427 1.62923 1.90929 2.17440 2.22587 2.51703 3.28934 3.36395 3.56744 3.59210 3.65799 3.73018 3.77278 3.95730 3.99941 4.07479 4.09748 4.20001 4.30177 4.41096 4.46154 4.46826 4.53871 4.64452 4.70176 4.72706 4.75317 4.83286 4.85987 4.88334 4.94710 4.97024 5.03756 5.06209 5.11886 5.15053 5.23690 5.31195 5.41705 5.43369 5.45166 5.59715 5.63637 5.67026 5.76043 5.80459 6.35058 6.39247 6.61158 7.14594 7.14705 7.30239 7.85905 8.38650 9.20416 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.002510 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.350184 B =11153.750011 C =11463.911877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C -0.126 4.126 4 C 0.153 3.847 5 N -0.601 5.601 6 C -0.252 4.252 7 H 0.072 0.928 8 C -0.054 4.054 9 N -0.939 5.939 10 Si 0.965 3.035 11 H -0.288 1.288 12 H -0.300 1.300 13 H -0.264 1.264 14 C 0.184 3.816 15 C -0.132 4.132 16 C 0.177 3.823 17 H 0.052 0.948 18 N -0.704 5.704 19 C 0.516 3.484 20 O -0.582 6.582 21 C -0.098 4.098 22 H 0.126 0.874 23 C -0.114 4.114 24 C 0.107 3.893 25 N -0.456 5.456 26 C 0.185 3.815 27 N -0.540 5.540 28 C -0.045 4.045 29 C -0.024 4.024 30 C -0.031 4.031 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.004 0.996 38 H 0.062 0.938 39 H 0.248 0.752 40 H -0.016 1.016 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.412 0.588 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.117 0.883 48 H 0.111 0.889 49 H 0.237 0.763 50 H 0.175 0.825 51 H 0.113 0.887 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.684 8.101 17.673 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C -0.183 4.183 4 C 0.027 3.973 5 N -0.323 5.323 6 C -0.382 4.382 7 H 0.090 0.910 8 C -0.249 4.249 9 N -0.585 5.585 10 Si 0.793 3.207 11 H -0.215 1.215 12 H -0.227 1.227 13 H -0.189 1.189 14 C 0.057 3.943 15 C -0.173 4.173 16 C 0.072 3.928 17 H 0.070 0.930 18 N -0.355 5.355 19 C 0.304 3.696 20 O -0.462 6.462 21 C -0.120 4.120 22 H 0.144 0.856 23 C -0.152 4.152 24 C -0.014 4.014 25 N -0.140 5.140 26 C -0.097 4.097 27 N -0.259 5.259 28 C -0.192 4.192 29 C -0.139 4.139 30 C -0.070 4.070 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.022 0.978 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.002 0.998 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.250 0.750 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.135 0.865 48 H 0.129 0.871 49 H 0.253 0.747 50 H 0.192 0.808 51 H 0.131 0.869 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.358 7.679 18.218 25.660 hybrid contribution 1.258 -0.615 -1.336 1.935 sum -15.100 7.064 16.882 23.726 Atomic orbital electron populations 1.21755 0.92345 1.01665 1.02968 1.21178 0.96423 0.96643 0.93713 1.21731 1.01123 0.93644 1.01834 1.21110 0.83667 0.96285 0.96227 1.44230 1.00866 1.71131 1.16113 1.19514 0.98591 1.11491 1.08609 0.91019 1.25807 1.02014 0.95965 1.01113 1.70212 1.22062 1.15929 1.50303 0.85286 0.79304 0.77660 0.78424 1.21456 1.22689 1.18886 1.20440 0.97522 0.91903 0.84433 1.22352 0.96160 1.01128 0.97614 1.20553 0.92356 0.95703 0.84181 0.92951 1.46064 1.65171 1.14995 1.09317 1.20944 0.77109 0.86569 0.85015 1.90725 1.51552 1.18524 1.85364 1.21370 1.02249 0.96288 0.92050 0.85596 1.21648 1.01858 0.98672 0.93001 1.22237 0.99065 0.79999 1.00053 1.45660 1.38319 1.16514 1.13482 1.25443 1.03055 0.88156 0.93093 1.70475 1.14240 1.22195 1.18962 1.22096 1.05891 0.98733 0.92475 1.21095 1.02454 0.95051 0.95288 1.20148 0.98918 0.97006 0.90888 0.90672 0.91376 0.93696 0.93678 0.92386 0.90950 0.97779 0.91955 0.94314 0.99809 0.92837 0.91285 0.93863 0.74976 0.92088 0.88420 0.86480 0.87051 0.74702 0.80803 0.86855 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.31 71.98 0.60 -2.21 16 2 C -0.08 -2.23 0.56 -52.10 -0.03 -2.26 16 3 C -0.13 -3.27 7.83 71.98 0.56 -2.71 16 4 C 0.15 6.01 5.20 86.36 0.45 6.46 16 5 N -0.60 -29.22 2.43 -699.10 -1.70 -30.92 16 6 C -0.25 -13.43 9.58 84.03 0.81 -12.62 16 7 H 0.07 3.68 7.89 -2.91 -0.02 3.65 16 8 C -0.05 -3.00 4.90 84.86 0.42 -2.58 16 9 N -0.94 -56.31 11.22 21.65 0.24 -56.06 16 10 Si 0.96 44.64 29.59 68.60 2.03 46.67 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 13 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 14 C 0.18 9.07 5.31 86.36 0.46 9.53 16 15 C -0.13 -5.07 5.31 30.67 0.16 -4.91 16 16 C 0.18 5.56 1.57 45.02 0.07 5.63 16 17 H 0.05 1.98 7.58 -2.39 -0.02 1.97 16 18 N -0.70 -15.62 4.20 -442.41 -1.86 -17.47 16 19 C 0.52 12.11 7.09 87.66 0.62 12.73 16 20 O -0.58 -19.51 15.48 -3.05 -0.05 -19.56 16 21 C -0.10 -1.43 2.54 -11.37 -0.03 -1.46 16 22 H 0.13 1.25 8.12 -2.39 -0.02 1.23 16 23 C -0.11 -1.58 4.66 30.73 0.14 -1.44 16 24 C 0.11 0.88 7.00 86.48 0.61 1.49 16 25 N -0.46 -6.41 3.13 -514.86 -1.61 -8.03 16 26 C 0.18 2.85 12.66 180.38 2.28 5.13 16 27 N -0.54 -12.06 11.27 -200.97 -2.26 -14.33 16 28 C -0.05 -0.92 11.84 83.30 0.99 0.06 16 29 C -0.02 -0.41 6.57 40.73 0.27 -0.14 16 30 C -0.03 -0.45 5.45 29.98 0.16 -0.29 16 31 H 0.07 1.24 7.36 -2.39 -0.02 1.22 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 1.48 5.97 -2.39 -0.01 1.46 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.32 6.58 -2.39 -0.02 1.30 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.06 2.37 7.93 -2.38 -0.02 2.35 16 39 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 40 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 41 H 0.05 3.00 6.06 -2.39 -0.01 2.99 16 42 H 0.07 2.53 6.34 -2.39 -0.02 2.52 16 43 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.41 6.41 6.38 -92.70 -0.59 5.82 16 45 H 0.06 1.12 8.12 -2.39 -0.02 1.10 16 46 H 0.10 1.44 7.77 -2.38 -0.02 1.42 16 47 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 49 H 0.24 1.63 8.06 -2.91 -0.02 1.60 16 50 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 51 H 0.11 1.17 7.96 -2.39 -0.02 1.16 16 52 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -76.17 396.72 3.65 -72.52 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.32 Total: 16.78 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 8.54 Total: 10.41 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -7.19 Total: -126.81 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -76.17 3.65 -72.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940846563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.768 kcal (2) G-P(sol) polarization free energy of solvation -76.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds