Wall clock time and date at job start Wed Apr 1 2020 04:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.49299 * 2 1 4 4 C 1.53191 * 109.49776 * 239.90529 * 2 1 3 5 5 N 1.47199 * 108.85509 * 294.69900 * 4 2 1 6 6 C 1.36935 * 120.81754 * 126.33686 * 5 4 2 7 7 H 1.08007 * 119.99920 * 207.54133 * 6 5 4 8 8 C 1.38804 * 120.00238 * 27.53769 * 6 5 4 9 9 N 1.31624 * 120.00025 * 17.25587 * 8 6 5 10 10 Si 1.86801 * 120.00311 * 197.25673 * 8 6 5 11 11 H 1.48505 * 109.47002 * 90.00337 * 10 8 6 12 12 H 1.48506 * 109.47209 * 209.99842 * 10 8 6 13 13 H 1.48497 * 109.47373 * 330.00036 * 10 8 6 14 14 C 1.46928 * 118.55471 * 306.47593 * 5 4 2 15 15 C 1.53196 * 108.89290 * 53.54015 * 14 5 4 16 16 C 1.53036 * 109.50178 * 120.06360 * 2 1 3 17 17 H 1.09003 * 109.44814 * 178.60041 * 16 2 1 18 18 N 1.46499 * 109.45905 * 298.56781 * 16 2 1 19 19 C 1.34781 * 119.99858 * 205.06214 * 18 16 2 20 20 O 1.21285 * 119.99795 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00121 * 180.02562 * 19 18 16 22 22 H 1.08996 * 109.49536 * 60.00185 * 21 19 18 23 23 C 1.53109 * 109.49807 * 180.02562 * 21 19 18 24 24 C 1.53268 * 109.71965 * 189.82168 * 23 21 19 25 25 N 1.46475 * 108.71409 * 309.29176 * 24 23 21 26 26 C 1.34414 * 128.44077 * 197.33534 * 25 24 23 27 27 N 1.30781 * 108.54924 * 179.80180 * 26 25 24 28 28 C 1.34425 * 109.32566 * 0.05787 * 27 26 25 29 29 C 1.33863 * 107.79719 * 0.02562 * 28 27 26 30 30 C 1.50708 * 128.68257 * 179.91151 * 29 28 27 31 31 H 1.08998 * 109.47292 * 299.93165 * 1 2 3 32 32 H 1.08999 * 109.47371 * 59.93617 * 1 2 3 33 33 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47249 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47141 * 300.06372 * 3 2 1 36 36 H 1.09000 * 109.47182 * 60.06801 * 3 2 1 37 37 H 1.09006 * 109.58486 * 54.46541 * 4 2 1 38 38 H 1.08996 * 109.58559 * 174.88996 * 4 2 1 39 39 H 0.96996 * 120.00327 * 179.97438 * 9 8 6 40 40 H 1.09005 * 109.58754 * 293.68378 * 14 5 4 41 41 H 1.09002 * 109.59151 * 173.39841 * 14 5 4 42 42 H 1.09001 * 109.50023 * 65.24409 * 15 14 5 43 43 H 1.08999 * 109.50049 * 185.31311 * 15 14 5 44 44 H 0.96993 * 120.00287 * 25.07108 * 18 16 2 45 45 H 1.09000 * 109.43031 * 309.92889 * 23 21 19 46 46 H 1.09006 * 109.43446 * 69.78659 * 23 21 19 47 47 H 1.08999 * 109.61690 * 189.50162 * 24 23 21 48 48 H 1.08998 * 109.69019 * 69.11817 * 24 23 21 49 49 H 1.08004 * 125.71942 * 359.77918 * 26 25 24 50 50 H 1.07993 * 126.10209 * 180.02562 * 28 27 26 51 51 H 1.09002 * 109.74572 * 76.09901 * 30 29 28 52 52 H 1.08997 * 109.78421 * 315.40835 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0413 -0.7241 -1.2494 5 7 1.6514 -2.1413 -1.1709 6 6 0.9630 -2.7373 -2.1937 7 1 0.3106 -3.5736 -1.9903 8 6 1.1037 -2.2665 -3.4919 9 7 2.1238 -1.4961 -3.8056 10 14 -0.1547 -2.7261 -4.7937 11 1 -1.2423 -1.7150 -4.8096 12 1 0.5025 -2.7671 -6.1248 13 1 -0.7246 -4.0613 -4.4817 14 6 2.0141 -2.9039 0.0315 15 6 1.5031 -2.1554 1.2666 16 6 2.0409 -0.7227 1.2485 17 1 3.1306 -0.7439 1.2351 18 7 1.5811 -0.0137 2.4452 19 6 2.2706 -0.1206 3.5984 20 8 3.2719 -0.8035 3.6451 21 6 1.7974 0.6082 4.8296 22 1 0.7949 0.2692 5.0902 23 6 2.7515 0.3206 5.9921 24 6 2.1506 0.8523 7.2980 25 7 1.7443 2.2449 7.0956 26 6 1.4751 3.1800 8.0229 27 7 1.1539 4.2910 7.4122 28 6 1.2068 4.0993 6.0828 29 6 1.5717 2.8297 5.8667 30 6 1.7724 2.1177 4.5536 31 1 -0.3634 0.5128 0.8906 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1305 1.4419 -0.0005 35 1 1.6765 1.9566 -0.8894 36 1 1.6784 1.9560 0.8906 37 1 1.6006 -0.2736 -2.1388 38 1 3.1274 -0.6465 -1.2979 39 1 2.2223 -1.1674 -4.7129 40 1 3.0981 -3.0042 0.0875 41 1 1.5575 -3.8928 -0.0113 42 1 0.4133 -2.1351 1.2547 43 1 1.8477 -2.6625 2.1678 44 1 0.7806 0.5326 2.4078 45 1 2.9074 -0.7549 6.0756 46 1 3.7070 0.8116 5.8070 47 1 2.8960 0.8004 8.0915 48 1 1.2818 0.2541 7.5727 49 1 1.5168 3.0376 9.0926 50 1 0.9930 4.8378 5.3244 51 1 2.7186 2.4256 4.1087 52 1 0.9524 2.3554 3.8760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940846566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:32 Heat of formation + Delta-G solvation = 36.443690 kcal Electronic energy + Delta-G solvation = -31856.515178 eV Core-core repulsion = 27856.967377 eV Total energy + Delta-G solvation = -3999.547801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.61179 -40.26990 -38.44904 -36.41583 -34.66137 -33.54463 -32.77523 -31.99177 -30.78621 -29.56051 -28.20767 -26.81093 -25.96744 -25.37974 -24.78397 -23.23361 -22.01939 -21.69004 -20.64153 -20.18999 -19.41617 -18.27705 -17.50096 -17.24311 -16.57098 -16.15734 -15.61650 -15.33090 -14.89978 -14.46479 -14.38602 -14.22025 -14.07392 -13.94078 -13.83131 -13.53396 -13.41981 -13.39069 -13.17995 -12.72512 -12.41010 -12.28894 -12.14689 -11.69533 -11.56151 -11.52514 -11.42393 -11.33133 -11.09372 -10.91528 -10.73064 -10.61445 -10.28403 -10.23962 -10.13896 -10.00378 -9.82562 -9.79921 -9.67500 -9.42869 -8.73743 -8.60439 -8.48820 -6.71453 -5.82475 -3.24018 1.78032 2.47234 2.62865 2.92078 3.19892 3.35018 3.42488 3.43277 4.03221 4.19854 4.26167 4.38567 4.46225 4.49635 4.72111 4.75922 4.84757 5.04223 5.09335 5.17645 5.23667 5.31007 5.35633 5.37922 5.47605 5.52150 5.53760 5.59028 5.73801 5.81745 5.89804 6.03690 6.04876 6.08308 6.16623 6.26679 6.36504 6.42042 6.43108 6.47838 6.59687 6.66263 6.78184 6.88204 6.92992 6.94200 6.99988 7.27817 7.55842 7.65302 7.76840 7.81224 8.28650 8.40720 9.17109 9.80459 10.37597 11.26333 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.002413 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.606006 B =11599.046213 C =12170.447933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C -0.134 4.134 4 C 0.185 3.815 5 N -0.589 5.589 6 C -0.250 4.250 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.163 3.837 17 H 0.081 0.919 18 N -0.717 5.717 19 C 0.516 3.484 20 O -0.540 6.540 21 C -0.112 4.112 22 H 0.099 0.901 23 C -0.114 4.114 24 C 0.103 3.897 25 N -0.456 5.456 26 C 0.181 3.819 27 N -0.497 5.497 28 C -0.023 4.023 29 C -0.020 4.020 30 C -0.036 4.036 31 H 0.029 0.971 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.019 0.981 39 H 0.254 0.746 40 H 0.019 0.981 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.396 0.604 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.204 0.796 50 H 0.170 0.830 51 H 0.089 0.911 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.940 7.179 20.740 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.099 4.099 3 C -0.192 4.192 4 C 0.058 3.942 5 N -0.311 5.311 6 C -0.379 4.379 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.547 5.547 10 Si 0.730 3.270 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.060 3.940 17 H 0.099 0.901 18 N -0.367 5.367 19 C 0.301 3.699 20 O -0.417 6.417 21 C -0.134 4.134 22 H 0.118 0.882 23 C -0.152 4.152 24 C -0.019 4.019 25 N -0.140 5.140 26 C -0.101 4.101 27 N -0.216 5.216 28 C -0.170 4.170 29 C -0.134 4.134 30 C -0.074 4.074 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.231 0.769 45 H 0.118 0.882 46 H 0.099 0.901 47 H 0.114 0.886 48 H 0.105 0.895 49 H 0.220 0.780 50 H 0.187 0.813 51 H 0.107 0.893 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.339 7.307 21.011 22.286 hybrid contribution -0.806 -0.685 -1.005 1.459 sum -2.145 6.622 20.006 21.182 Atomic orbital electron populations 1.21746 0.94717 1.02566 0.99391 1.21554 0.96295 0.94971 0.97080 1.21763 1.00778 0.95893 1.00737 1.20884 0.96350 0.83496 0.93424 1.44105 1.65253 1.05650 1.16136 1.19160 1.18110 1.14834 0.85815 0.91664 1.25013 0.97042 1.00556 0.96927 1.70019 1.27565 1.38294 1.18779 0.86321 0.81156 0.78233 0.81251 1.21473 1.21802 1.20487 1.20869 0.96643 0.94298 0.86217 1.22440 1.01007 0.95374 0.99411 1.21024 0.99251 0.91326 0.82441 0.90109 1.46361 1.29465 1.50382 1.10477 1.20261 0.83808 0.81467 0.84365 1.90714 1.25531 1.40795 1.84658 1.21437 1.01529 0.95902 0.94536 0.88244 1.21678 0.98862 1.03637 0.91012 1.22069 1.00978 0.79009 0.99830 1.45488 1.50657 1.11312 1.06561 1.24793 1.04392 0.84222 0.96653 1.70501 1.20436 1.24626 1.05987 1.21853 1.07191 0.94654 0.93297 1.21030 1.10126 0.95109 0.87183 1.20177 1.04003 0.91210 0.92044 0.95213 0.92885 0.91126 0.93074 0.92547 0.93805 0.88821 0.96246 0.93609 0.96303 0.92634 0.91866 0.92888 0.76914 0.88225 0.90058 0.88625 0.89491 0.77968 0.81315 0.89300 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 7.83 37.16 0.29 -1.73 16 2 C -0.10 -1.62 0.56 -154.39 -0.09 -1.70 16 3 C -0.13 -1.94 8.31 37.16 0.31 -1.64 16 4 C 0.19 4.10 4.01 -3.56 -0.01 4.09 16 5 N -0.59 -13.92 2.45 -172.09 -0.42 -14.34 16 6 C -0.25 -6.53 9.59 -15.06 -0.14 -6.68 16 7 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 8 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 9 N -0.90 -25.33 11.18 55.49 0.62 -24.71 16 10 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.15 3.01 6.50 -3.71 -0.02 2.99 16 15 C -0.14 -2.43 5.31 -26.61 -0.14 -2.57 16 16 C 0.16 2.61 1.57 -67.89 -0.11 2.50 16 17 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 18 N -0.72 -8.82 4.19 -53.76 -0.23 -9.05 16 19 C 0.52 6.37 7.10 -10.98 -0.08 6.29 16 20 O -0.54 -8.80 15.48 5.55 0.09 -8.72 16 21 C -0.11 -0.97 2.54 -91.47 -0.23 -1.20 16 22 H 0.10 0.75 8.12 -51.93 -0.42 0.33 16 23 C -0.11 -0.89 4.66 -26.54 -0.12 -1.01 16 24 C 0.10 0.60 7.00 -3.92 -0.03 0.57 16 25 N -0.46 -3.80 3.13 -114.09 -0.36 -4.16 16 26 C 0.18 1.61 12.66 -90.71 -1.15 0.46 16 27 N -0.50 -5.82 11.27 -14.87 -0.17 -5.99 16 28 C -0.02 -0.24 11.84 -17.95 -0.21 -0.45 16 29 C -0.02 -0.19 6.57 -81.73 -0.54 -0.73 16 30 C -0.04 -0.29 5.45 -27.63 -0.15 -0.44 16 31 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.52 7.36 -51.93 -0.38 0.14 16 37 H 0.09 2.35 6.04 -51.93 -0.31 2.03 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 42 H 0.06 1.07 6.33 -51.93 -0.33 0.74 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.40 4.05 6.38 -40.82 -0.26 3.78 16 45 H 0.10 0.81 7.77 -51.93 -0.40 0.41 16 46 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 47 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.20 1.03 8.06 -52.48 -0.42 0.61 16 50 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 51 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 52 H 0.09 0.63 7.95 -51.93 -0.41 0.22 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -32.14 396.71 -10.63 -42.76 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.60 Total: 3.39 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.51 Total: -1.25 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.55 Total: -58.24 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.14 -10.63 -42.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940846566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.208 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds