Wall clock time and date at job start Wed Apr 1 2020 04:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.49299 * 2 1 4 4 C 1.53191 * 109.49776 * 239.90529 * 2 1 3 5 5 N 1.47199 * 108.85509 * 294.69900 * 4 2 1 6 6 C 1.36935 * 120.81754 * 126.33686 * 5 4 2 7 7 H 1.08007 * 119.99920 * 207.54133 * 6 5 4 8 8 C 1.38804 * 120.00238 * 27.53769 * 6 5 4 9 9 N 1.31624 * 120.00025 * 17.25587 * 8 6 5 10 10 Si 1.86801 * 120.00311 * 197.25673 * 8 6 5 11 11 H 1.48505 * 109.47002 * 90.00337 * 10 8 6 12 12 H 1.48506 * 109.47209 * 209.99842 * 10 8 6 13 13 H 1.48497 * 109.47373 * 330.00036 * 10 8 6 14 14 C 1.46928 * 118.55471 * 306.47593 * 5 4 2 15 15 C 1.53196 * 108.89290 * 53.54015 * 14 5 4 16 16 C 1.53036 * 109.50178 * 120.06360 * 2 1 3 17 17 H 1.09003 * 109.44814 * 178.60041 * 16 2 1 18 18 N 1.46499 * 109.45905 * 298.56781 * 16 2 1 19 19 C 1.34781 * 119.99858 * 205.06214 * 18 16 2 20 20 O 1.21285 * 119.99795 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00121 * 180.02562 * 19 18 16 22 22 H 1.08996 * 109.49536 * 60.00185 * 21 19 18 23 23 C 1.53109 * 109.49807 * 180.02562 * 21 19 18 24 24 C 1.53268 * 109.71965 * 189.82168 * 23 21 19 25 25 N 1.46475 * 108.71409 * 309.29176 * 24 23 21 26 26 C 1.34414 * 128.44077 * 197.33534 * 25 24 23 27 27 N 1.30781 * 108.54924 * 179.80180 * 26 25 24 28 28 C 1.34425 * 109.32566 * 0.05787 * 27 26 25 29 29 C 1.33863 * 107.79719 * 0.02562 * 28 27 26 30 30 C 1.50708 * 128.68257 * 179.91151 * 29 28 27 31 31 H 1.08998 * 109.47292 * 299.93165 * 1 2 3 32 32 H 1.08999 * 109.47371 * 59.93617 * 1 2 3 33 33 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47249 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47141 * 300.06372 * 3 2 1 36 36 H 1.09000 * 109.47182 * 60.06801 * 3 2 1 37 37 H 1.09006 * 109.58486 * 54.46541 * 4 2 1 38 38 H 1.08996 * 109.58559 * 174.88996 * 4 2 1 39 39 H 0.96996 * 120.00327 * 179.97438 * 9 8 6 40 40 H 1.09005 * 109.58754 * 293.68378 * 14 5 4 41 41 H 1.09002 * 109.59151 * 173.39841 * 14 5 4 42 42 H 1.09001 * 109.50023 * 65.24409 * 15 14 5 43 43 H 1.08999 * 109.50049 * 185.31311 * 15 14 5 44 44 H 0.96993 * 120.00287 * 25.07108 * 18 16 2 45 45 H 1.09000 * 109.43031 * 309.92889 * 23 21 19 46 46 H 1.09006 * 109.43446 * 69.78659 * 23 21 19 47 47 H 1.08999 * 109.61690 * 189.50162 * 24 23 21 48 48 H 1.08998 * 109.69019 * 69.11817 * 24 23 21 49 49 H 1.08004 * 125.71942 * 359.77918 * 26 25 24 50 50 H 1.07993 * 126.10209 * 180.02562 * 28 27 26 51 51 H 1.09002 * 109.74572 * 76.09901 * 30 29 28 52 52 H 1.08997 * 109.78421 * 315.40835 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0413 -0.7241 -1.2494 5 7 1.6514 -2.1413 -1.1709 6 6 0.9630 -2.7373 -2.1937 7 1 0.3106 -3.5736 -1.9903 8 6 1.1037 -2.2665 -3.4919 9 7 2.1238 -1.4961 -3.8056 10 14 -0.1547 -2.7261 -4.7937 11 1 -1.2423 -1.7150 -4.8096 12 1 0.5025 -2.7671 -6.1248 13 1 -0.7246 -4.0613 -4.4817 14 6 2.0141 -2.9039 0.0315 15 6 1.5031 -2.1554 1.2666 16 6 2.0409 -0.7227 1.2485 17 1 3.1306 -0.7439 1.2351 18 7 1.5811 -0.0137 2.4452 19 6 2.2706 -0.1206 3.5984 20 8 3.2719 -0.8035 3.6451 21 6 1.7974 0.6082 4.8296 22 1 0.7949 0.2692 5.0902 23 6 2.7515 0.3206 5.9921 24 6 2.1506 0.8523 7.2980 25 7 1.7443 2.2449 7.0956 26 6 1.4751 3.1800 8.0229 27 7 1.1539 4.2910 7.4122 28 6 1.2068 4.0993 6.0828 29 6 1.5717 2.8297 5.8667 30 6 1.7724 2.1177 4.5536 31 1 -0.3634 0.5128 0.8906 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1305 1.4419 -0.0005 35 1 1.6765 1.9566 -0.8894 36 1 1.6784 1.9560 0.8906 37 1 1.6006 -0.2736 -2.1388 38 1 3.1274 -0.6465 -1.2979 39 1 2.2223 -1.1674 -4.7129 40 1 3.0981 -3.0042 0.0875 41 1 1.5575 -3.8928 -0.0113 42 1 0.4133 -2.1351 1.2547 43 1 1.8477 -2.6625 2.1678 44 1 0.7806 0.5326 2.4078 45 1 2.9074 -0.7549 6.0756 46 1 3.7070 0.8116 5.8070 47 1 2.8960 0.8004 8.0915 48 1 1.2818 0.2541 7.5727 49 1 1.5168 3.0376 9.0926 50 1 0.9930 4.8378 5.3244 51 1 2.7186 2.4256 4.1087 52 1 0.9524 2.3554 3.8760 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940846566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:31 Heat of formation + Delta-G solvation = 18.683127 kcal Electronic energy + Delta-G solvation = -31857.285334 eV Core-core repulsion = 27856.967377 eV Total energy + Delta-G solvation = -4000.317957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.25490 -41.42820 -39.76201 -37.19877 -36.24486 -34.48106 -33.96565 -33.65907 -31.47157 -31.14820 -28.97975 -28.11688 -27.59027 -26.81225 -25.62774 -24.38574 -23.19014 -22.38589 -22.27900 -21.22764 -20.10018 -19.60559 -18.86463 -18.07777 -17.88474 -17.08193 -16.79004 -16.53592 -16.21129 -15.72084 -15.42088 -15.33630 -15.02216 -15.00007 -14.91099 -14.74439 -14.67503 -14.52479 -14.12296 -14.02638 -13.80191 -13.24672 -13.04553 -12.97014 -12.87333 -12.86047 -12.68548 -12.60716 -12.41089 -12.30976 -12.15547 -12.04053 -11.90954 -11.80816 -11.61684 -11.30046 -11.18058 -10.97450 -10.67501 -10.52783 -10.41785 -9.93789 -9.27318 -8.67511 -7.85746 -5.30066 1.14841 1.47806 1.49170 1.57481 1.64277 1.91621 2.17955 2.23461 2.52149 3.29085 3.37564 3.57422 3.60460 3.66398 3.75897 3.78890 3.96601 3.99762 4.10449 4.14173 4.20984 4.31179 4.37012 4.46623 4.47523 4.53322 4.62105 4.67739 4.72034 4.76471 4.82281 4.87976 4.89142 4.95623 4.99482 5.00177 5.05533 5.12173 5.14012 5.27829 5.33502 5.37725 5.44421 5.46165 5.60175 5.62508 5.72492 5.77132 5.81735 6.35545 6.40166 6.62175 7.15609 7.16124 7.30073 7.86123 8.39318 9.20938 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024478 B = 0.002413 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.606006 B =11599.046213 C =12170.447933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.193 3.807 5 N -0.603 5.603 6 C -0.254 4.254 7 H 0.067 0.933 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.963 3.037 11 H -0.283 1.283 12 H -0.299 1.299 13 H -0.270 1.270 14 C 0.143 3.857 15 C -0.127 4.127 16 C 0.176 3.824 17 H 0.052 0.948 18 N -0.705 5.705 19 C 0.518 3.482 20 O -0.580 6.580 21 C -0.100 4.100 22 H 0.122 0.878 23 C -0.113 4.113 24 C 0.106 3.894 25 N -0.457 5.457 26 C 0.184 3.816 27 N -0.540 5.540 28 C -0.046 4.046 29 C -0.024 4.024 30 C -0.031 4.031 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.062 0.938 38 H -0.016 1.016 39 H 0.249 0.751 40 H 0.002 0.998 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.411 0.589 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.118 0.882 48 H 0.109 0.891 49 H 0.236 0.764 50 H 0.176 0.824 51 H 0.080 0.920 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.934 7.574 23.335 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.088 4.088 3 C -0.187 4.187 4 C 0.067 3.933 5 N -0.326 5.326 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.244 4.244 9 N -0.581 5.581 10 Si 0.791 3.209 11 H -0.210 1.210 12 H -0.226 1.226 13 H -0.195 1.195 14 C 0.016 3.984 15 C -0.167 4.167 16 C 0.071 3.929 17 H 0.070 0.930 18 N -0.356 5.356 19 C 0.306 3.694 20 O -0.460 6.460 21 C -0.121 4.121 22 H 0.140 0.860 23 C -0.151 4.151 24 C -0.014 4.014 25 N -0.140 5.140 26 C -0.098 4.098 27 N -0.259 5.259 28 C -0.192 4.192 29 C -0.139 4.139 30 C -0.069 4.069 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.002 0.998 39 H 0.058 0.942 40 H 0.020 0.980 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.249 0.751 45 H 0.115 0.885 46 H 0.082 0.918 47 H 0.136 0.864 48 H 0.127 0.873 49 H 0.252 0.748 50 H 0.193 0.807 51 H 0.099 0.901 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.360 7.704 23.642 25.092 hybrid contribution -0.088 -0.867 -1.767 1.970 sum -3.448 6.838 21.875 23.177 Atomic orbital electron populations 1.21669 0.93265 1.01778 1.01040 1.21310 0.97237 0.95655 0.94620 1.21728 1.00164 0.94412 1.02389 1.20678 0.94078 0.83467 0.95121 1.44325 1.65206 1.06538 1.16515 1.19455 1.17765 1.14620 0.86582 0.91566 1.25718 0.98667 1.01144 0.98822 1.70183 1.29334 1.39854 1.18767 0.85335 0.78895 0.78303 0.78330 1.20978 1.22596 1.19514 1.20967 0.95784 0.94805 0.86797 1.22236 1.01388 0.95595 0.97475 1.20552 0.97503 0.91115 0.83685 0.92978 1.46086 1.30026 1.50171 1.09327 1.20894 0.82839 0.80719 0.84984 1.90712 1.27363 1.42635 1.85283 1.21397 1.02580 0.95636 0.92522 0.86015 1.21640 0.98115 1.03420 0.91896 1.22233 1.02399 0.77715 0.99094 1.45665 1.50106 1.12119 1.06108 1.25430 1.02873 0.83540 0.97994 1.70469 1.22275 1.26427 1.06727 1.22108 1.08120 0.95596 0.93413 1.21121 1.09861 0.94952 0.87932 1.20178 1.04396 0.90438 0.91917 0.90801 0.93982 0.93091 0.94133 0.92818 0.90160 0.91933 0.99758 0.94192 0.97981 0.92549 0.90788 0.92191 0.75082 0.88474 0.91762 0.86417 0.87336 0.74793 0.80721 0.90112 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.58 7.83 71.98 0.56 -3.01 16 2 C -0.09 -2.84 0.56 -52.11 -0.03 -2.87 16 3 C -0.13 -3.59 8.31 71.98 0.60 -3.00 16 4 C 0.19 8.90 4.01 86.31 0.35 9.24 16 5 N -0.60 -29.30 2.45 -698.38 -1.71 -31.01 16 6 C -0.25 -13.54 9.59 84.03 0.81 -12.74 16 7 H 0.07 3.46 7.89 -2.91 -0.02 3.43 16 8 C -0.05 -2.63 4.92 84.86 0.42 -2.21 16 9 N -0.94 -54.51 11.18 21.65 0.24 -54.26 16 10 Si 0.96 44.02 29.59 68.60 2.03 46.05 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 14 C 0.14 5.98 6.50 86.36 0.56 6.54 16 15 C -0.13 -4.22 5.31 30.67 0.16 -4.06 16 16 C 0.18 5.49 1.57 45.02 0.07 5.56 16 17 H 0.05 1.96 7.58 -2.39 -0.02 1.95 16 18 N -0.70 -15.42 4.19 -442.39 -1.86 -17.28 16 19 C 0.52 11.60 7.10 87.66 0.62 12.22 16 20 O -0.58 -18.35 15.48 -3.05 -0.05 -18.39 16 21 C -0.10 -1.40 2.54 -11.34 -0.03 -1.42 16 22 H 0.12 1.26 8.12 -2.39 -0.02 1.24 16 23 C -0.11 -1.47 4.66 30.72 0.14 -1.32 16 24 C 0.11 0.83 7.00 86.47 0.61 1.44 16 25 N -0.46 -6.19 3.13 -514.87 -1.61 -7.80 16 26 C 0.18 2.76 12.66 180.38 2.28 5.05 16 27 N -0.54 -11.80 11.27 -200.97 -2.26 -14.07 16 28 C -0.05 -0.90 11.84 83.30 0.99 0.09 16 29 C -0.02 -0.38 6.57 40.73 0.27 -0.12 16 30 C -0.03 -0.41 5.45 30.01 0.16 -0.24 16 31 H 0.07 1.53 6.58 -2.39 -0.02 1.52 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.73 5.97 -2.39 -0.01 1.72 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.64 7.36 -2.39 -0.02 1.63 16 37 H 0.06 3.28 6.04 -2.38 -0.01 3.27 16 38 H -0.02 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 41 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 42 H 0.07 2.34 6.33 -2.39 -0.02 2.32 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.41 6.59 6.38 -92.71 -0.59 6.00 16 45 H 0.10 1.36 7.77 -2.39 -0.02 1.34 16 46 H 0.06 1.07 8.12 -2.38 -0.02 1.05 16 47 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.24 1.57 8.06 -2.91 -0.02 1.55 16 50 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 51 H 0.08 1.24 8.11 -2.39 -0.02 1.22 16 52 H 0.11 1.05 7.95 -2.39 -0.02 1.04 16 Total: -1.00 -73.73 396.71 3.65 -70.08 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.32 Total: 17.53 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 8.54 Total: 9.15 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -7.20 Total: -124.42 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.05 Total: -18.39 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -73.73 3.65 -70.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940846566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.766 kcal (2) G-P(sol) polarization free energy of solvation -73.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds