Wall clock time and date at job start Wed Apr 1 2020 04:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.52253 * 2 1 4 4 C 1.53192 * 109.49609 * 239.92298 * 2 1 3 5 5 N 1.46934 * 108.77309 * 185.41063 * 4 2 1 6 6 C 1.36932 * 120.62934 * 233.62654 * 5 4 2 7 7 H 1.08000 * 120.00125 * 151.82323 * 6 5 4 8 8 C 1.38817 * 120.00160 * 331.82381 * 6 5 4 9 9 N 1.31618 * 119.99902 * 343.07346 * 8 6 5 10 10 Si 1.86802 * 119.99895 * 163.07014 * 8 6 5 11 11 H 1.48502 * 109.47088 * 0.02562 * 10 8 6 12 12 H 1.48491 * 109.46904 * 120.00156 * 10 8 6 13 13 H 1.48501 * 109.46908 * 240.00114 * 10 8 6 14 14 C 1.46921 * 118.73745 * 53.60761 * 5 4 2 15 15 C 1.53190 * 108.77605 * 306.38895 * 14 5 4 16 16 C 1.53038 * 109.50021 * 120.08114 * 2 1 3 17 17 H 1.08998 * 109.46150 * 61.31201 * 16 2 1 18 18 N 1.46499 * 109.46027 * 301.33822 * 16 2 1 19 19 C 1.34777 * 120.00011 * 155.00181 * 18 16 2 20 20 O 1.21272 * 119.99943 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99676 * 180.02562 * 19 18 16 22 22 H 1.09003 * 109.72400 * 59.38233 * 21 19 18 23 23 C 1.53446 * 109.72084 * 179.97438 * 21 19 18 24 24 C 1.53149 * 109.19473 * 168.21725 * 23 21 19 25 25 C 1.53243 * 109.55660 * 290.56684 * 24 23 21 26 26 N 1.46591 * 108.79746 * 50.58088 * 25 24 23 27 27 N 1.39654 * 127.54933 * 162.65272 * 26 25 24 28 28 C 1.31019 * 108.12762 * 180.10181 * 27 26 25 29 29 C 1.40065 * 108.25412 * 359.97248 * 28 27 26 30 30 C 1.34743 * 107.79774 * 359.97438 * 29 28 27 31 31 H 1.08998 * 109.46888 * 299.91541 * 1 2 3 32 32 H 1.09000 * 109.47163 * 59.92046 * 1 2 3 33 33 H 1.08998 * 109.46729 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47180 * 180.08426 * 3 2 1 35 35 H 1.09007 * 109.47305 * 300.08054 * 3 2 1 36 36 H 1.08993 * 109.47375 * 60.07949 * 3 2 1 37 37 H 1.09002 * 109.58592 * 305.18958 * 4 2 1 38 38 H 1.08994 * 109.59228 * 65.62297 * 4 2 1 39 39 H 0.96998 * 119.99823 * 180.02562 * 9 8 6 40 40 H 1.09001 * 109.58961 * 66.17801 * 14 5 4 41 41 H 1.08999 * 109.58722 * 186.60241 * 14 5 4 42 42 H 1.09000 * 109.49748 * 294.68567 * 15 14 5 43 43 H 1.09006 * 109.49695 * 174.58665 * 15 14 5 44 44 H 0.97000 * 119.99879 * 334.99881 * 18 16 2 45 45 H 1.09004 * 109.51426 * 48.30416 * 23 21 19 46 46 H 1.09000 * 109.56191 * 288.16134 * 23 21 19 47 47 H 1.09000 * 109.45810 * 170.53872 * 24 23 21 48 48 H 1.09000 * 109.45514 * 50.58932 * 24 23 21 49 49 H 1.09008 * 109.58353 * 290.78533 * 25 24 23 50 50 H 1.08998 * 109.58287 * 170.37777 * 25 24 23 51 51 H 1.08000 * 125.87511 * 179.97438 * 28 27 26 52 52 H 1.08000 * 126.10163 * 179.72056 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5046 -0.8290 -1.1697 6 6 4.2935 -0.3783 -2.1941 7 1 5.2960 -0.0314 -1.9914 8 6 3.8049 -0.3674 -3.4934 9 7 2.7419 -1.0793 -3.8027 10 14 4.6559 0.6576 -4.8028 11 1 5.8191 1.3596 -4.2034 12 1 5.1240 -0.2286 -5.8984 13 1 3.7013 1.6563 -5.3475 14 6 4.1053 -1.4266 0.0306 15 6 3.5709 -0.6949 1.2659 16 6 2.0408 -0.7231 1.2483 17 1 1.6970 -1.7573 1.2351 18 7 1.5266 -0.0530 2.4453 19 6 1.3986 -0.7383 3.5987 20 8 1.7088 -1.9097 3.6456 21 6 0.8691 -0.0490 4.8298 22 1 -0.1315 0.3364 4.6339 23 6 0.8212 -1.0418 5.9988 24 6 0.5679 -0.2753 7.3003 25 6 1.8036 0.5597 7.6526 26 7 2.1956 1.3425 6.4768 27 7 3.0320 2.4603 6.4387 28 6 3.1211 2.8604 5.1943 29 6 2.3429 2.0068 4.4021 30 6 1.7874 1.0850 5.2129 31 1 -0.3633 0.5125 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1312 1.4411 -0.0015 35 1 1.6772 1.9567 -0.8893 36 1 1.6796 1.9558 0.8906 37 1 1.6053 -1.7216 -1.2980 38 1 1.7637 -0.1579 -2.1389 39 1 2.4006 -1.0720 -4.7106 40 1 3.8376 -2.4817 0.0866 41 1 5.1896 -1.3244 -0.0139 42 1 3.9159 0.3390 1.2540 43 1 3.9335 -1.1896 2.1670 44 1 1.2782 0.8839 2.4076 45 1 1.7720 -1.5705 6.0667 46 1 0.0165 -1.7589 5.8360 47 1 0.3662 -0.9825 8.1048 48 1 -0.2910 0.3834 7.1724 49 1 2.6212 -0.1012 7.9407 50 1 1.5671 1.2323 8.4771 51 1 3.6958 3.7034 4.8402 52 1 2.2083 2.0776 3.3329 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940846769.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:26 Heat of formation + Delta-G solvation = 38.020077 kcal Electronic energy + Delta-G solvation = -32561.792614 eV Core-core repulsion = 28562.313170 eV Total energy + Delta-G solvation = -3999.479444 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.71140 -41.23349 -39.65237 -37.25726 -36.24194 -34.51183 -33.90157 -33.39559 -31.39572 -30.95465 -29.28502 -28.11152 -27.58113 -27.10098 -25.65294 -23.91124 -23.16309 -22.27787 -22.15434 -21.62528 -20.06565 -19.57740 -18.88130 -18.14636 -17.60148 -17.07979 -16.74985 -16.54103 -16.00146 -15.69999 -15.51006 -15.34303 -15.30303 -15.04238 -14.93938 -14.80757 -14.66073 -14.30502 -14.09253 -13.81689 -13.38018 -13.23678 -13.06758 -13.03256 -12.86269 -12.70991 -12.61928 -12.42924 -12.35512 -12.29987 -12.07092 -12.00438 -11.88242 -11.81273 -11.62573 -11.61158 -11.28517 -11.19873 -10.91335 -10.52071 -10.16701 -9.94642 -9.52682 -8.65180 -7.84598 -5.29452 0.79733 1.42845 1.47542 1.50348 1.60130 1.72405 1.83975 2.21299 2.53296 3.30571 3.37816 3.41323 3.55191 3.65798 3.71368 3.77736 3.99659 4.02297 4.13591 4.15474 4.23550 4.29148 4.37442 4.46728 4.55821 4.61860 4.63562 4.69196 4.73571 4.79374 4.84233 4.89622 4.92870 4.98765 5.00058 5.00890 5.05870 5.12911 5.13813 5.24359 5.28671 5.33592 5.38104 5.47307 5.58623 5.63959 5.70459 5.73798 5.78473 6.01987 6.41935 6.57047 6.73033 7.17991 7.24029 7.87381 8.40598 9.22055 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.002936 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.023482 B = 9532.991555 C =10063.792205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.121 4.121 4 C 0.196 3.804 5 N -0.602 5.602 6 C -0.255 4.255 7 H 0.065 0.935 8 C -0.046 4.046 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.297 1.297 13 H -0.288 1.288 14 C 0.144 3.856 15 C -0.125 4.125 16 C 0.176 3.824 17 H 0.055 0.945 18 N -0.701 5.701 19 C 0.524 3.476 20 O -0.574 6.574 21 C -0.039 4.039 22 H 0.149 0.851 23 C -0.108 4.108 24 C -0.122 4.122 25 C 0.119 3.881 26 N -0.369 5.369 27 N -0.324 5.324 28 C 0.042 3.958 29 C -0.275 4.275 30 C 0.084 3.916 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.070 0.930 37 H -0.015 1.015 38 H 0.063 0.937 39 H 0.249 0.751 40 H 0.003 0.997 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.409 0.591 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.124 0.876 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.108 0.892 51 H 0.206 0.794 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.640 7.104 22.687 25.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.178 4.178 4 C 0.070 3.930 5 N -0.325 5.325 6 C -0.385 4.385 7 H 0.082 0.918 8 C -0.242 4.242 9 N -0.580 5.580 10 Si 0.791 3.209 11 H -0.192 1.192 12 H -0.224 1.224 13 H -0.215 1.215 14 C 0.018 3.982 15 C -0.165 4.165 16 C 0.072 3.928 17 H 0.073 0.927 18 N -0.354 5.354 19 C 0.310 3.690 20 O -0.453 6.453 21 C -0.062 4.062 22 H 0.166 0.834 23 C -0.146 4.146 24 C -0.160 4.160 25 C -0.001 4.001 26 N -0.153 5.153 27 N -0.145 5.145 28 C -0.143 4.143 29 C -0.304 4.304 30 C -0.044 4.044 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.003 0.997 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.021 0.979 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.249 0.751 45 H 0.076 0.924 46 H 0.114 0.886 47 H 0.142 0.858 48 H 0.108 0.892 49 H 0.102 0.898 50 H 0.126 0.874 51 H 0.222 0.778 52 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.122 6.416 23.928 26.071 hybrid contribution 0.432 0.214 -2.243 2.294 sum -7.690 6.629 21.685 23.944 Atomic orbital electron populations 1.21729 0.93243 1.01395 1.02344 1.21337 0.96102 0.96926 0.94557 1.21678 1.01337 0.93768 1.01021 1.20604 0.82409 0.95068 0.94926 1.44258 1.02179 1.69531 1.16485 1.19469 0.98193 1.34356 0.86489 0.91761 1.25721 0.99415 1.00230 0.98813 1.70185 1.27245 1.41837 1.18724 0.85283 0.78195 0.78317 0.79113 1.19173 1.22402 1.21462 1.20946 0.96707 0.93746 0.86793 1.22208 0.95652 1.01414 0.97228 1.20589 0.92936 0.95705 0.83612 0.92687 1.46219 1.64965 1.14891 1.09298 1.20584 0.77160 0.86508 0.84766 1.90705 1.51272 1.18072 1.85259 1.20240 0.99515 0.92778 0.93624 0.83393 1.21549 1.03995 0.96914 0.92187 1.21976 0.96286 0.99447 0.98331 1.22174 0.98701 0.93885 0.85297 1.48967 1.36526 1.23036 1.06767 1.77241 1.13693 1.01564 1.22034 1.24356 0.99374 1.00740 0.89841 1.21359 1.07710 1.00086 1.01229 1.20659 0.99752 0.97657 0.86341 0.90443 0.92600 0.93869 0.93033 0.93677 0.91082 0.99668 0.91873 0.94161 0.97901 0.92702 0.90878 0.92987 0.75101 0.92354 0.88616 0.85797 0.89188 0.89804 0.87416 0.77755 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 8.31 71.98 0.60 -3.06 16 2 C -0.09 -2.95 0.56 -52.10 -0.03 -2.98 16 3 C -0.12 -3.70 7.83 71.98 0.56 -3.14 16 4 C 0.20 9.13 3.98 86.36 0.34 9.48 16 5 N -0.60 -29.71 2.43 -699.09 -1.70 -31.41 16 6 C -0.25 -13.76 9.58 84.04 0.81 -12.95 16 7 H 0.06 3.42 7.88 -2.91 -0.02 3.40 16 8 C -0.05 -2.55 4.92 84.86 0.42 -2.13 16 9 N -0.93 -54.48 11.20 21.65 0.24 -54.24 16 10 Si 0.96 44.31 29.59 68.60 2.03 46.34 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 13 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 14 C 0.14 6.27 6.52 86.36 0.56 6.84 16 15 C -0.13 -4.46 5.31 30.67 0.16 -4.30 16 16 C 0.18 5.79 1.57 45.02 0.07 5.86 16 17 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 18 N -0.70 -17.30 3.70 -442.42 -1.64 -18.94 16 19 C 0.52 13.44 7.03 87.66 0.62 14.05 16 20 O -0.57 -19.65 15.47 -3.00 -0.05 -19.69 16 21 C -0.04 -0.68 2.91 -12.08 -0.04 -0.72 16 22 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 23 C -0.11 -1.62 4.76 30.79 0.15 -1.47 16 24 C -0.12 -1.03 5.93 30.73 0.18 -0.85 16 25 C 0.12 1.54 7.28 86.44 0.63 2.17 16 26 N -0.37 -7.55 4.04 -334.09 -1.35 -8.89 16 27 N -0.32 -7.76 12.62 -56.80 -0.72 -8.48 16 28 C 0.04 0.87 12.03 85.26 1.03 1.90 16 29 C -0.27 -5.63 9.82 21.91 0.22 -5.42 16 30 C 0.08 1.70 6.11 41.28 0.25 1.95 16 31 H 0.08 1.66 7.36 -2.39 -0.02 1.64 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.81 5.97 -2.39 -0.01 1.79 16 35 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.07 1.57 6.58 -2.39 -0.02 1.55 16 37 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.06 3.32 6.06 -2.39 -0.01 3.30 16 39 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 40 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.05 2.34 7.93 -2.39 -0.02 2.32 16 42 H 0.07 2.51 6.34 -2.39 -0.02 2.49 16 43 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.41 7.99 4.41 -92.71 -0.41 7.58 16 45 H 0.06 1.18 7.70 -2.39 -0.02 1.16 16 46 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.09 0.59 8.12 -2.39 -0.02 0.57 16 49 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 50 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.21 3.07 8.06 -2.91 -0.02 3.05 16 52 H 0.16 2.80 5.95 -2.91 -0.02 2.78 16 Total: -1.00 -72.54 392.62 3.87 -68.67 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.51 Total: 21.41 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 6.53 Total: 5.23 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -5.16 Total: -121.95 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -72.54 3.87 -68.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940846769.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.691 kcal (2) G-P(sol) polarization free energy of solvation -72.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds