Wall clock time and date at job start Wed Apr 1 2020 04:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.52651 * 2 1 4 4 C 1.53191 * 109.49473 * 239.91628 * 2 1 3 5 5 N 1.46921 * 108.77894 * 294.68491 * 4 2 1 6 6 C 1.36933 * 120.62932 * 126.37264 * 5 4 2 7 7 H 1.08006 * 119.99695 * 207.70036 * 6 5 4 8 8 C 1.38813 * 120.00639 * 27.70014 * 6 5 4 9 9 N 1.31625 * 119.99472 * 17.34710 * 8 6 5 10 10 Si 1.86796 * 120.00465 * 197.35134 * 8 6 5 11 11 H 1.48502 * 109.47113 * 59.99817 * 10 8 6 12 12 H 1.48507 * 109.47124 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47208 * 299.99687 * 10 8 6 14 14 C 1.46928 * 118.73846 * 306.39085 * 5 4 2 15 15 C 1.53190 * 108.77437 * 53.61276 * 14 5 4 16 16 C 1.53040 * 109.49411 * 120.08215 * 2 1 3 17 17 H 1.09009 * 109.44583 * 178.59959 * 16 2 1 18 18 N 1.46498 * 109.46416 * 298.56260 * 16 2 1 19 19 C 1.34772 * 120.00231 * 205.07230 * 18 16 2 20 20 O 1.21279 * 120.00409 * 0.02562 * 19 18 16 21 21 C 1.50710 * 119.99960 * 179.97438 * 19 18 16 22 22 H 1.08991 * 109.75246 * 299.36011 * 21 19 18 23 23 C 1.53324 * 109.71928 * 178.79360 * 21 19 18 24 24 C 1.53147 * 109.29899 * 192.01325 * 23 21 19 25 25 C 1.53242 * 109.55392 * 69.32134 * 24 23 21 26 26 N 1.46590 * 108.79740 * 309.42414 * 25 24 23 27 27 N 1.39646 * 127.54534 * 197.30869 * 26 25 24 28 28 C 1.31030 * 108.12801 * 179.86960 * 27 26 25 29 29 C 1.40056 * 108.25160 * 0.04313 * 28 27 26 30 30 C 1.34756 * 107.79965 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47547 * 299.91655 * 1 2 3 32 32 H 1.09003 * 109.47524 * 59.91877 * 1 2 3 33 33 H 1.09001 * 109.47638 * 179.91829 * 1 2 3 34 34 H 1.09001 * 109.47443 * 180.08192 * 3 2 1 35 35 H 1.09005 * 109.47341 * 300.08219 * 3 2 1 36 36 H 1.09003 * 109.47353 * 60.08214 * 3 2 1 37 37 H 1.09003 * 109.58147 * 174.89630 * 4 2 1 38 38 H 1.09000 * 109.58725 * 54.47993 * 4 2 1 39 39 H 0.96995 * 119.99793 * 180.02562 * 9 8 6 40 40 H 1.09003 * 109.58757 * 293.82006 * 14 5 4 41 41 H 1.09002 * 109.69993 * 173.46595 * 14 5 4 42 42 H 1.09000 * 109.49653 * 185.41185 * 15 14 5 43 43 H 1.08998 * 109.50089 * 65.31370 * 15 14 5 44 44 H 0.97005 * 119.99394 * 25.06629 * 18 16 2 45 45 H 1.09003 * 109.55810 * 72.00580 * 23 21 19 46 46 H 1.08997 * 109.35761 * 311.90147 * 23 21 19 47 47 H 1.09004 * 109.45873 * 309.30025 * 24 23 21 48 48 H 1.08998 * 109.44556 * 189.34130 * 24 23 21 49 49 H 1.09000 * 109.58515 * 189.62215 * 25 24 23 50 50 H 1.09002 * 109.69581 * 69.28354 * 25 24 23 51 51 H 1.07994 * 125.87115 * 180.02562 * 28 27 26 52 52 H 1.07995 * 126.10268 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4419 0.0000 4 6 2.0412 -0.7239 -1.2496 5 7 1.6514 -2.1382 -1.1696 6 6 0.9631 -2.7311 -2.1941 7 1 0.3069 -3.5650 -1.9923 8 6 1.1084 -2.2607 -3.4919 9 7 2.1333 -1.4958 -3.8036 10 14 -0.1502 -2.7129 -4.7959 11 1 -1.4891 -2.2201 -4.3836 12 1 0.2300 -2.0885 -6.0886 13 1 -0.1926 -4.1890 -4.9522 14 6 2.0139 -2.9041 0.0308 15 6 1.5029 -2.1559 1.2660 16 6 2.0407 -0.7231 1.2484 17 1 3.1305 -0.7445 1.2351 18 7 1.5810 -0.0145 2.4453 19 6 2.2705 -0.1218 3.5984 20 8 3.2717 -0.8045 3.6450 21 6 1.7979 0.6077 4.8296 22 1 1.7889 1.6812 4.6410 23 6 2.7325 0.2982 6.0050 24 6 2.0899 0.7893 7.3055 25 6 0.8731 -0.0813 7.6370 26 7 0.0142 -0.1636 6.4519 27 7 -1.3242 -0.5581 6.3967 28 6 -1.7187 -0.4884 5.1491 29 6 -0.6401 -0.0475 4.3721 30 6 0.4099 0.1430 5.1950 31 1 -0.3634 0.5125 0.8907 32 1 -0.3634 0.5151 -0.8893 33 1 -0.3634 -1.0276 -0.0015 34 1 3.1313 1.4409 -0.0015 35 1 1.6773 1.9566 -0.8893 36 1 1.6797 1.9557 0.8907 37 1 3.1274 -0.6463 -1.2980 38 1 1.6007 -0.2731 -2.1389 39 1 2.2347 -1.1667 -4.7104 40 1 3.0979 -3.0044 0.0867 41 1 1.5572 -3.8928 -0.0124 42 1 1.8479 -2.6629 2.1671 43 1 0.4131 -2.1355 1.2541 44 1 0.7804 0.5320 2.4079 45 1 3.6861 0.8046 5.8560 46 1 2.8957 -0.7779 6.0631 47 1 1.7731 1.8253 7.1853 48 1 2.8154 0.7232 8.1162 49 1 0.3172 0.3662 8.4609 50 1 1.2028 -1.0812 7.9194 51 1 -2.7056 -0.7297 4.7831 52 1 -0.6481 0.1107 3.3038 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940846770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:31 Heat of formation + Delta-G solvation = 57.463337 kcal Electronic energy + Delta-G solvation = -32574.477947 eV Core-core repulsion = 28575.841626 eV Total energy + Delta-G solvation = -3998.636321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.88591 -39.97387 -38.28882 -36.49218 -34.62165 -33.29881 -32.55405 -31.88239 -30.55474 -29.34369 -28.49159 -26.77390 -26.00435 -25.66180 -24.43150 -22.63658 -22.19576 -21.31920 -20.61934 -20.42137 -19.25960 -18.22958 -17.34288 -16.95916 -16.48187 -15.92312 -15.57119 -15.09697 -14.88860 -14.72338 -14.41416 -14.14761 -13.95045 -13.86402 -13.65971 -13.50654 -13.22634 -13.14662 -12.80440 -12.55636 -12.36465 -12.25512 -11.75191 -11.64433 -11.50121 -11.45545 -11.36319 -11.29720 -11.03887 -10.86285 -10.84242 -10.67148 -10.56206 -10.23279 -10.10166 -10.00645 -9.90717 -9.65514 -9.46271 -9.28149 -8.72540 -8.64061 -8.43785 -6.66569 -5.78781 -3.20064 1.63045 2.22124 2.63084 2.76636 3.30222 3.38885 3.44573 3.45663 4.05366 4.15792 4.26641 4.37525 4.49964 4.73542 4.82959 4.87888 4.92925 5.14554 5.20748 5.26711 5.28516 5.33707 5.40762 5.46767 5.51530 5.57550 5.59822 5.66413 5.86306 5.87491 5.90193 5.98709 6.07953 6.10088 6.22846 6.31524 6.41176 6.47005 6.49631 6.51393 6.64469 6.71683 6.75832 6.84243 6.93981 6.99795 7.06267 7.32493 7.54949 7.60256 7.70233 7.80709 8.33111 8.45202 9.21628 9.84949 10.41924 11.29901 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019268 B = 0.002946 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.851698 B = 9502.652393 C =10033.234516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C -0.134 4.134 4 C 0.187 3.813 5 N -0.589 5.589 6 C -0.250 4.250 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.903 5.903 10 Si 0.900 3.100 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.147 3.853 15 C -0.141 4.141 16 C 0.163 3.837 17 H 0.081 0.919 18 N -0.713 5.713 19 C 0.524 3.476 20 O -0.535 6.535 21 C -0.048 4.048 22 H 0.117 0.883 23 C -0.108 4.108 24 C -0.135 4.135 25 C 0.131 3.869 26 N -0.365 5.365 27 N -0.294 5.294 28 C 0.049 3.951 29 C -0.262 4.262 30 C 0.090 3.910 31 H 0.029 0.971 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.019 0.981 38 H 0.093 0.907 39 H 0.254 0.746 40 H 0.019 0.981 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.396 0.604 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.084 0.916 51 H 0.185 0.815 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 8.796 20.506 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.100 4.100 3 C -0.192 4.192 4 C 0.060 3.940 5 N -0.311 5.311 6 C -0.380 4.380 7 H 0.082 0.918 8 C -0.195 4.195 9 N -0.547 5.547 10 Si 0.730 3.270 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.020 3.980 15 C -0.181 4.181 16 C 0.059 3.941 17 H 0.099 0.901 18 N -0.365 5.365 19 C 0.308 3.692 20 O -0.412 6.412 21 C -0.071 4.071 22 H 0.135 0.865 23 C -0.146 4.146 24 C -0.174 4.174 25 C 0.010 3.990 26 N -0.149 5.149 27 N -0.115 5.115 28 C -0.136 4.136 29 C -0.291 4.291 30 C -0.038 4.038 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.233 0.767 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.115 0.885 49 H 0.110 0.890 50 H 0.102 0.898 51 H 0.202 0.798 52 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.875 8.061 21.682 23.208 hybrid contribution -0.871 0.267 -1.591 1.834 sum -2.746 8.328 20.091 21.921 Atomic orbital electron populations 1.21754 0.94681 1.02668 0.99334 1.21570 0.96350 0.94920 0.97140 1.21766 1.00781 0.95978 1.00676 1.20816 0.96289 0.83519 0.93332 1.44032 1.65169 1.05665 1.16197 1.19119 1.17946 1.15098 0.85794 0.91752 1.25007 0.96995 1.00591 0.96906 1.70017 1.27367 1.38456 1.18863 0.86407 0.81474 0.78104 0.81023 1.21044 1.21710 1.20951 1.20873 0.96601 0.94282 0.86222 1.22421 1.01107 0.95268 0.99293 1.21037 0.99240 0.91418 0.82361 0.90108 1.46489 1.29362 1.50306 1.10351 1.19952 0.83748 0.81430 0.84055 1.90713 1.25707 1.40175 1.84615 1.20186 0.90017 1.01617 0.95318 0.86530 1.21504 0.98157 1.03741 0.91211 1.21986 0.96337 0.99848 0.99190 1.21827 0.89931 1.01809 0.85450 1.48652 1.08710 1.51484 1.06063 1.77292 0.90952 1.22296 1.20925 1.23927 1.00166 0.99337 0.90211 1.21165 0.92868 1.14339 1.00713 1.20496 0.95500 1.01610 0.86171 0.95254 0.92893 0.90988 0.93054 0.92556 0.93893 0.96329 0.88878 0.93603 0.96344 0.92638 0.92937 0.91747 0.76661 0.89466 0.89897 0.90506 0.88516 0.88953 0.89773 0.79787 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.83 37.16 0.29 -1.78 16 2 C -0.10 -1.68 0.56 -154.39 -0.09 -1.76 16 3 C -0.13 -2.00 8.31 37.15 0.31 -1.70 16 4 C 0.19 4.21 3.99 -3.71 -0.01 4.19 16 5 N -0.59 -14.12 2.43 -172.32 -0.42 -14.54 16 6 C -0.25 -6.62 9.59 -15.06 -0.14 -6.77 16 7 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 8 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 9 N -0.90 -25.50 11.19 55.49 0.62 -24.88 16 10 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.15 3.11 6.51 -3.71 -0.02 3.09 16 15 C -0.14 -2.53 5.31 -26.61 -0.14 -2.67 16 16 C 0.16 2.72 1.57 -67.89 -0.11 2.62 16 17 H 0.08 1.55 7.58 -51.92 -0.39 1.15 16 18 N -0.71 -9.62 3.71 -53.76 -0.20 -9.82 16 19 C 0.52 7.23 7.05 -10.98 -0.08 7.15 16 20 O -0.54 -9.33 15.47 5.56 0.09 -9.24 16 21 C -0.05 -0.49 2.92 -92.67 -0.27 -0.76 16 22 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 23 C -0.11 -0.94 4.75 -26.49 -0.13 -1.07 16 24 C -0.14 -0.81 5.93 -26.53 -0.16 -0.96 16 25 C 0.13 1.01 7.28 -3.87 -0.03 0.98 16 26 N -0.37 -4.14 4.04 -56.95 -0.23 -4.37 16 27 N -0.29 -3.77 12.62 30.69 0.39 -3.38 16 28 C 0.05 0.56 12.03 -17.21 -0.21 0.36 16 29 C -0.26 -3.02 9.80 -40.13 -0.39 -3.41 16 30 C 0.09 1.02 6.11 -82.22 -0.50 0.52 16 31 H 0.03 0.38 6.58 -51.93 -0.34 0.04 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.32 5.97 -51.93 -0.31 1.01 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.54 7.36 -51.93 -0.38 0.16 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.16 7.94 -51.93 -0.41 0.74 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.15 6.34 -51.93 -0.33 0.82 16 44 H 0.40 4.61 4.26 -40.82 -0.17 4.43 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.89 7.70 -51.93 -0.40 0.49 16 47 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 48 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.19 1.58 8.06 -52.49 -0.42 1.15 16 52 H 0.15 1.58 5.87 -52.49 -0.31 1.27 16 LS Contribution 392.39 15.07 5.91 5.91 Total: -1.00 -31.95 392.39 -9.04 -40.99 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.41 Total: 5.07 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.77 Total: -1.98 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.16 Total: -56.99 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.95 -9.04 -40.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940846770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.455 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds