Wall clock time and date at job start Wed Apr 1 2020 04:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.52651 * 2 1 4 4 C 1.53191 * 109.49473 * 239.91628 * 2 1 3 5 5 N 1.46921 * 108.77894 * 294.68491 * 4 2 1 6 6 C 1.36933 * 120.62932 * 126.37264 * 5 4 2 7 7 H 1.08006 * 119.99695 * 207.70036 * 6 5 4 8 8 C 1.38813 * 120.00639 * 27.70014 * 6 5 4 9 9 N 1.31625 * 119.99472 * 17.34710 * 8 6 5 10 10 Si 1.86796 * 120.00465 * 197.35134 * 8 6 5 11 11 H 1.48502 * 109.47113 * 59.99817 * 10 8 6 12 12 H 1.48507 * 109.47124 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47208 * 299.99687 * 10 8 6 14 14 C 1.46928 * 118.73846 * 306.39085 * 5 4 2 15 15 C 1.53190 * 108.77437 * 53.61276 * 14 5 4 16 16 C 1.53040 * 109.49411 * 120.08215 * 2 1 3 17 17 H 1.09009 * 109.44583 * 178.59959 * 16 2 1 18 18 N 1.46498 * 109.46416 * 298.56260 * 16 2 1 19 19 C 1.34772 * 120.00231 * 205.07230 * 18 16 2 20 20 O 1.21279 * 120.00409 * 0.02562 * 19 18 16 21 21 C 1.50710 * 119.99960 * 179.97438 * 19 18 16 22 22 H 1.08991 * 109.75246 * 299.36011 * 21 19 18 23 23 C 1.53324 * 109.71928 * 178.79360 * 21 19 18 24 24 C 1.53147 * 109.29899 * 192.01325 * 23 21 19 25 25 C 1.53242 * 109.55392 * 69.32134 * 24 23 21 26 26 N 1.46590 * 108.79740 * 309.42414 * 25 24 23 27 27 N 1.39646 * 127.54534 * 197.30869 * 26 25 24 28 28 C 1.31030 * 108.12801 * 179.86960 * 27 26 25 29 29 C 1.40056 * 108.25160 * 0.04313 * 28 27 26 30 30 C 1.34756 * 107.79965 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.47547 * 299.91655 * 1 2 3 32 32 H 1.09003 * 109.47524 * 59.91877 * 1 2 3 33 33 H 1.09001 * 109.47638 * 179.91829 * 1 2 3 34 34 H 1.09001 * 109.47443 * 180.08192 * 3 2 1 35 35 H 1.09005 * 109.47341 * 300.08219 * 3 2 1 36 36 H 1.09003 * 109.47353 * 60.08214 * 3 2 1 37 37 H 1.09003 * 109.58147 * 174.89630 * 4 2 1 38 38 H 1.09000 * 109.58725 * 54.47993 * 4 2 1 39 39 H 0.96995 * 119.99793 * 180.02562 * 9 8 6 40 40 H 1.09003 * 109.58757 * 293.82006 * 14 5 4 41 41 H 1.09002 * 109.69993 * 173.46595 * 14 5 4 42 42 H 1.09000 * 109.49653 * 185.41185 * 15 14 5 43 43 H 1.08998 * 109.50089 * 65.31370 * 15 14 5 44 44 H 0.97005 * 119.99394 * 25.06629 * 18 16 2 45 45 H 1.09003 * 109.55810 * 72.00580 * 23 21 19 46 46 H 1.08997 * 109.35761 * 311.90147 * 23 21 19 47 47 H 1.09004 * 109.45873 * 309.30025 * 24 23 21 48 48 H 1.08998 * 109.44556 * 189.34130 * 24 23 21 49 49 H 1.09000 * 109.58515 * 189.62215 * 25 24 23 50 50 H 1.09002 * 109.69581 * 69.28354 * 25 24 23 51 51 H 1.07994 * 125.87115 * 180.02562 * 28 27 26 52 52 H 1.07995 * 126.10268 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4419 0.0000 4 6 2.0412 -0.7239 -1.2496 5 7 1.6514 -2.1382 -1.1696 6 6 0.9631 -2.7311 -2.1941 7 1 0.3069 -3.5650 -1.9923 8 6 1.1084 -2.2607 -3.4919 9 7 2.1333 -1.4958 -3.8036 10 14 -0.1502 -2.7129 -4.7959 11 1 -1.4891 -2.2201 -4.3836 12 1 0.2300 -2.0885 -6.0886 13 1 -0.1926 -4.1890 -4.9522 14 6 2.0139 -2.9041 0.0308 15 6 1.5029 -2.1559 1.2660 16 6 2.0407 -0.7231 1.2484 17 1 3.1305 -0.7445 1.2351 18 7 1.5810 -0.0145 2.4453 19 6 2.2705 -0.1218 3.5984 20 8 3.2717 -0.8045 3.6450 21 6 1.7979 0.6077 4.8296 22 1 1.7889 1.6812 4.6410 23 6 2.7325 0.2982 6.0050 24 6 2.0899 0.7893 7.3055 25 6 0.8731 -0.0813 7.6370 26 7 0.0142 -0.1636 6.4519 27 7 -1.3242 -0.5581 6.3967 28 6 -1.7187 -0.4884 5.1491 29 6 -0.6401 -0.0475 4.3721 30 6 0.4099 0.1430 5.1950 31 1 -0.3634 0.5125 0.8907 32 1 -0.3634 0.5151 -0.8893 33 1 -0.3634 -1.0276 -0.0015 34 1 3.1313 1.4409 -0.0015 35 1 1.6773 1.9566 -0.8893 36 1 1.6797 1.9557 0.8907 37 1 3.1274 -0.6463 -1.2980 38 1 1.6007 -0.2731 -2.1389 39 1 2.2347 -1.1667 -4.7104 40 1 3.0979 -3.0044 0.0867 41 1 1.5572 -3.8928 -0.0124 42 1 1.8479 -2.6629 2.1671 43 1 0.4131 -2.1355 1.2541 44 1 0.7804 0.5320 2.4079 45 1 3.6861 0.8046 5.8560 46 1 2.8957 -0.7779 6.0631 47 1 1.7731 1.8253 7.1853 48 1 2.8154 0.7232 8.1162 49 1 0.3172 0.3662 8.4609 50 1 1.2028 -1.0812 7.9194 51 1 -2.7056 -0.7297 4.7831 52 1 -0.6481 0.1107 3.3038 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940846770.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:29 Heat of formation + Delta-G solvation = 38.696219 kcal Electronic energy + Delta-G solvation = -32575.291750 eV Core-core repulsion = 28575.841626 eV Total energy + Delta-G solvation = -3999.450124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.71806 -41.23339 -39.65449 -37.26133 -36.24272 -34.51975 -33.90519 -33.39498 -31.39778 -30.95044 -29.29250 -28.11409 -27.58047 -27.10093 -25.65195 -23.91256 -23.16607 -22.27819 -22.15961 -21.63357 -20.06510 -19.57867 -18.87964 -18.14627 -17.60522 -17.07594 -16.74659 -16.54764 -16.00918 -15.71068 -15.51217 -15.33814 -15.30705 -15.04197 -14.94691 -14.81088 -14.65481 -14.29696 -14.08887 -13.81823 -13.38069 -13.24275 -13.06905 -13.02388 -12.84741 -12.71217 -12.57989 -12.45761 -12.37269 -12.29190 -12.07589 -12.00264 -11.92563 -11.80728 -11.62527 -11.61397 -11.28834 -11.19903 -10.91648 -10.50206 -10.16809 -9.94830 -9.52887 -8.65699 -7.84387 -5.28742 0.79432 1.42949 1.49570 1.50930 1.57764 1.71959 1.83726 2.21110 2.53700 3.30463 3.37552 3.41156 3.54932 3.65794 3.71180 3.77549 3.99386 4.02054 4.13457 4.15295 4.23553 4.29127 4.37239 4.46316 4.55778 4.61618 4.62993 4.69047 4.73581 4.79343 4.84082 4.89392 4.92856 4.98508 4.99833 5.00893 5.05646 5.12657 5.13630 5.24270 5.28469 5.33376 5.37960 5.47184 5.58429 5.63529 5.70207 5.73633 5.78425 6.01771 6.41679 6.56776 6.72876 7.17991 7.23679 7.87651 8.40670 9.22042 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019268 B = 0.002946 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.851698 B = 9502.652393 C =10033.234516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 C -0.129 4.129 4 C 0.196 3.804 5 N -0.602 5.602 6 C -0.258 4.258 7 H 0.065 0.935 8 C -0.046 4.046 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.275 1.275 12 H -0.296 1.296 13 H -0.280 1.280 14 C 0.144 3.856 15 C -0.125 4.125 16 C 0.176 3.824 17 H 0.055 0.945 18 N -0.701 5.701 19 C 0.524 3.476 20 O -0.574 6.574 21 C -0.039 4.039 22 H 0.149 0.851 23 C -0.108 4.108 24 C -0.122 4.122 25 C 0.119 3.881 26 N -0.369 5.369 27 N -0.324 5.324 28 C 0.042 3.958 29 C -0.275 4.275 30 C 0.084 3.916 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.077 0.923 37 H -0.015 1.015 38 H 0.064 0.936 39 H 0.250 0.750 40 H 0.003 0.997 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.409 0.591 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.090 0.910 48 H 0.124 0.876 49 H 0.108 0.892 50 H 0.084 0.916 51 H 0.206 0.794 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.760 10.472 22.649 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.089 4.089 3 C -0.187 4.187 4 C 0.070 3.930 5 N -0.324 5.324 6 C -0.388 4.388 7 H 0.082 0.918 8 C -0.241 4.241 9 N -0.580 5.580 10 Si 0.791 3.209 11 H -0.201 1.201 12 H -0.222 1.222 13 H -0.206 1.206 14 C 0.018 3.982 15 C -0.165 4.165 16 C 0.071 3.929 17 H 0.073 0.927 18 N -0.354 5.354 19 C 0.310 3.690 20 O -0.453 6.453 21 C -0.062 4.062 22 H 0.166 0.834 23 C -0.146 4.146 24 C -0.160 4.160 25 C -0.001 4.001 26 N -0.153 5.153 27 N -0.145 5.145 28 C -0.143 4.143 29 C -0.304 4.304 30 C -0.044 4.044 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.003 0.997 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.021 0.979 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.249 0.751 45 H 0.114 0.886 46 H 0.076 0.924 47 H 0.108 0.892 48 H 0.142 0.858 49 H 0.126 0.874 50 H 0.102 0.898 51 H 0.222 0.778 52 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.291 9.749 23.873 25.996 hybrid contribution -0.367 -0.338 -2.219 2.274 sum -3.658 9.411 21.654 23.892 Atomic orbital electron populations 1.21678 0.93295 1.01823 1.00997 1.21335 0.97263 0.95750 0.94573 1.21729 1.00332 0.94305 1.02346 1.20610 0.94111 0.83363 0.94955 1.44242 1.65133 1.06578 1.16465 1.19413 1.17748 1.15013 0.86607 0.91752 1.25707 0.98596 1.01070 0.98748 1.70179 1.29034 1.39877 1.18885 0.85416 0.79468 0.77746 0.78260 1.20111 1.22211 1.20588 1.20941 0.95769 0.94690 0.86785 1.22207 1.01346 0.95712 0.97239 1.20595 0.97650 0.91007 0.83615 0.92661 1.46240 1.29781 1.50055 1.09333 1.20589 0.82912 0.80765 0.84771 1.90707 1.27510 1.41829 1.85253 1.20217 0.89609 1.02641 0.93691 0.83394 1.21527 0.98576 1.02429 0.92107 1.21972 0.95823 0.99817 0.98400 1.22173 0.90378 1.02525 0.84992 1.48965 1.08516 1.50853 1.06933 1.77244 0.92110 1.23372 1.21806 1.24354 1.01205 0.98809 0.89920 1.21358 0.93058 1.14818 1.01176 1.20667 0.95774 1.01530 0.86452 0.91111 0.93687 0.93061 0.93849 0.92583 0.90460 0.99663 0.91800 0.94139 0.97902 0.92701 0.92978 0.90906 0.75095 0.88595 0.92376 0.89182 0.85785 0.87432 0.89789 0.77757 0.82684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 7.83 71.98 0.56 -3.16 16 2 C -0.09 -2.96 0.56 -52.11 -0.03 -2.99 16 3 C -0.13 -3.67 8.31 71.98 0.60 -3.07 16 4 C 0.20 9.13 3.99 86.36 0.34 9.47 16 5 N -0.60 -29.74 2.43 -699.10 -1.70 -31.44 16 6 C -0.26 -13.93 9.59 84.03 0.81 -13.13 16 7 H 0.06 3.42 7.89 -2.91 -0.02 3.39 16 8 C -0.05 -2.51 4.91 84.86 0.42 -2.10 16 9 N -0.93 -54.50 11.19 21.65 0.24 -54.26 16 10 Si 0.96 44.29 29.59 68.60 2.03 46.32 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 14 C 0.14 6.28 6.51 86.36 0.56 6.85 16 15 C -0.13 -4.47 5.31 30.67 0.16 -4.31 16 16 C 0.18 5.80 1.57 45.02 0.07 5.87 16 17 H 0.06 2.15 7.58 -2.38 -0.02 2.13 16 18 N -0.70 -17.41 3.71 -442.39 -1.64 -19.05 16 19 C 0.52 13.47 7.05 87.66 0.62 14.09 16 20 O -0.57 -19.65 15.47 -3.03 -0.05 -19.70 16 21 C -0.04 -0.68 2.92 -12.12 -0.04 -0.72 16 22 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 23 C -0.11 -1.62 4.75 30.75 0.15 -1.47 16 24 C -0.12 -1.03 5.93 30.72 0.18 -0.85 16 25 C 0.12 1.53 7.28 86.44 0.63 2.16 16 26 N -0.37 -7.54 4.04 -334.10 -1.35 -8.89 16 27 N -0.32 -7.76 12.62 -56.80 -0.72 -8.48 16 28 C 0.04 0.88 12.03 85.25 1.03 1.90 16 29 C -0.27 -5.64 9.80 21.91 0.21 -5.42 16 30 C 0.08 1.69 6.11 41.28 0.25 1.95 16 31 H 0.07 1.58 6.58 -2.39 -0.02 1.56 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.81 5.97 -2.39 -0.01 1.80 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.08 1.67 7.36 -2.39 -0.02 1.65 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.06 3.36 6.04 -2.39 -0.01 3.34 16 39 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 40 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.05 2.34 7.94 -2.39 -0.02 2.32 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 2.51 6.34 -2.39 -0.02 2.49 16 44 H 0.41 8.08 4.26 -92.70 -0.40 7.68 16 45 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.06 1.18 7.70 -2.39 -0.02 1.16 16 47 H 0.09 0.59 8.12 -2.38 -0.02 0.57 16 48 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.21 3.07 8.06 -2.91 -0.02 3.05 16 52 H 0.16 2.80 5.87 -2.91 -0.02 2.78 16 Total: -1.00 -72.41 392.39 3.87 -68.54 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.53 Total: 21.87 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 6.53 Total: 5.09 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -5.16 Total: -122.12 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.70 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.41 3.87 -68.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940846770.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.232 kcal (2) G-P(sol) polarization free energy of solvation -72.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds