Wall clock time and date at job start Wed Apr 1 2020 04:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.52382 * 2 1 4 4 C 1.53195 * 109.49736 * 120.08193 * 2 1 3 5 5 N 1.46925 * 108.77529 * 174.58849 * 4 2 1 6 6 C 1.36939 * 120.63374 * 126.36528 * 5 4 2 7 7 H 1.07999 * 120.00256 * 205.10094 * 6 5 4 8 8 C 1.38817 * 119.99653 * 25.10295 * 6 5 4 9 9 N 1.31615 * 120.00027 * 202.47368 * 8 6 5 10 10 Si 1.86799 * 120.00080 * 22.46567 * 8 6 5 11 11 H 1.48501 * 109.47227 * 264.61906 * 10 8 6 12 12 H 1.48507 * 109.47013 * 24.61697 * 10 8 6 13 13 H 1.48500 * 109.47047 * 144.61775 * 10 8 6 14 14 C 1.46925 * 118.73730 * 306.64378 * 5 4 2 15 15 C 1.52758 * 109.01062 * 53.30908 * 14 5 4 16 16 C 1.53035 * 109.49736 * 239.92140 * 2 1 3 17 17 H 1.09000 * 109.46259 * 298.69992 * 16 2 1 18 18 N 1.46496 * 109.46274 * 58.67379 * 16 2 1 19 19 C 1.34784 * 120.00347 * 204.99653 * 18 16 2 20 20 O 1.21280 * 119.99485 * 0.02562 * 19 18 16 21 21 C 1.50695 * 119.99932 * 180.02562 * 19 18 16 22 22 N 1.46507 * 109.46832 * 180.02562 * 21 19 18 23 23 C 1.34943 * 126.03794 * 124.71794 * 22 21 19 24 24 C 1.35314 * 107.74680 * 179.84169 * 23 22 21 25 25 C 1.50703 * 126.04336 * 180.16055 * 24 23 22 26 26 C 1.52993 * 117.49947 * 188.89989 * 25 24 23 27 27 C 1.52995 * 60.00153 * 252.50947 * 26 25 24 28 28 C 1.39874 * 107.91818 * 0.41602 * 24 23 22 29 29 N 1.30837 * 108.20259 * 359.74381 * 28 24 23 30 30 H 1.08995 * 109.47141 * 299.91605 * 1 2 3 31 31 H 1.09003 * 109.47244 * 59.91785 * 1 2 3 32 32 H 1.09007 * 109.47147 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47579 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47153 * 300.08710 * 3 2 1 35 35 H 1.09004 * 109.47249 * 60.07927 * 3 2 1 36 36 H 1.08997 * 109.58681 * 54.80289 * 4 2 1 37 37 H 1.09007 * 109.58318 * 294.37178 * 4 2 1 38 38 H 0.96995 * 120.00385 * 180.02562 * 9 8 6 39 39 H 1.09008 * 109.58687 * 173.14309 * 14 5 4 40 40 H 1.08993 * 109.58516 * 293.56677 * 14 5 4 41 41 H 1.09000 * 109.56519 * 185.55204 * 15 14 5 42 42 H 1.08998 * 109.38826 * 65.51666 * 15 14 5 43 43 H 0.96999 * 119.99840 * 25.00828 * 18 16 2 44 44 H 1.09001 * 109.47376 * 299.99959 * 21 19 18 45 45 H 1.08997 * 109.47237 * 60.00530 * 21 19 18 46 46 H 1.08000 * 126.12659 * 359.97438 * 23 22 21 47 47 H 1.08997 * 115.54295 * 334.61194 * 25 24 23 48 48 H 1.09000 * 117.50158 * 359.97438 * 26 25 24 49 49 H 1.09001 * 117.50094 * 145.02030 * 26 25 24 50 50 H 1.09002 * 117.50216 * 252.51072 * 27 26 25 51 51 H 1.09010 * 117.51655 * 107.48302 * 27 26 25 52 52 H 1.08000 * 125.89662 * 179.71749 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2936 -0.3784 2.1941 7 1 5.3126 -0.0783 1.9991 8 6 3.7837 -0.3074 3.4832 9 7 4.3315 0.5029 4.3639 10 14 2.3199 -1.3617 3.9681 11 1 1.0706 -0.5727 3.8195 12 1 2.2579 -2.5570 3.0889 13 1 2.4674 -1.7937 5.3812 14 6 4.1055 -1.4215 -0.0332 15 6 3.5708 -0.6950 -1.2660 16 6 2.0407 -0.7230 -1.2483 17 1 1.6967 -1.7572 -1.2353 18 7 1.5267 -0.0527 -2.4453 19 6 1.3987 -0.7379 -3.5989 20 8 1.7087 -1.9095 -3.6458 21 6 0.8705 -0.0482 -4.8302 22 7 0.8268 -1.0006 -5.9426 23 6 -0.2573 -1.3022 -6.6874 24 6 0.1180 -2.2183 -7.6099 25 6 -0.7713 -2.8381 -8.6568 26 6 -0.2019 -4.0044 -9.4669 27 6 -0.3843 -2.6344 -10.1230 28 6 1.4758 -2.4928 -7.4162 29 7 1.9017 -1.7634 -6.4170 30 1 -0.3633 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1312 1.4411 -0.0005 34 1 1.6772 1.9566 -0.8892 35 1 1.6796 1.9558 0.8907 36 1 1.6053 -1.7216 1.2980 37 1 1.7637 -0.1579 2.1389 38 1 3.9755 0.5522 5.2648 39 1 5.1896 -1.3158 0.0100 40 1 3.8412 -2.4773 -0.0915 41 1 3.9334 -1.1896 -2.1670 42 1 3.9159 0.3389 -1.2546 43 1 1.2786 0.8842 -2.4076 44 1 -0.1339 0.3270 -4.6339 45 1 1.5249 0.7840 -5.0895 46 1 -1.2466 -0.8854 -6.5698 47 1 -1.8340 -2.8636 -8.4156 48 1 0.8160 -4.3233 -9.2429 49 1 -0.8900 -4.7978 -9.7587 50 1 -1.1924 -2.5264 -10.8465 51 1 0.5134 -2.0518 -10.3304 52 1 2.0698 -3.1872 -7.9918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940850265.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:36 Heat of formation + Delta-G solvation = 99.402448 kcal Electronic energy + Delta-G solvation = -31072.903515 eV Core-core repulsion = 27076.085811 eV Total energy + Delta-G solvation = -3996.817704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.50913 -40.16582 -38.40022 -37.24077 -34.82733 -33.41157 -33.01959 -32.08132 -30.42704 -30.13037 -27.79040 -26.97038 -26.24674 -24.90442 -23.14279 -22.88920 -22.59835 -21.46620 -20.59334 -20.52015 -19.82066 -18.61802 -17.49709 -17.29555 -16.66983 -16.00885 -15.65151 -15.57246 -15.03945 -14.79196 -14.43294 -14.38976 -14.25582 -13.96301 -13.70834 -13.54763 -13.39009 -13.02171 -12.86776 -12.62531 -12.43812 -12.22922 -12.06528 -11.80981 -11.79283 -11.75688 -11.28220 -11.16042 -11.11997 -10.81012 -10.73559 -10.71995 -10.51496 -10.47453 -10.20959 -10.12532 -9.93135 -9.75382 -9.48871 -9.39287 -8.85058 -8.64731 -8.39789 -7.03119 -5.97240 -3.30003 1.67273 2.18038 2.52547 2.57254 3.14215 3.28648 3.47507 3.50357 3.75244 4.18142 4.48065 4.50562 4.53815 4.62478 4.66192 4.73198 4.80015 4.87103 4.92592 4.97242 5.11775 5.19653 5.22623 5.37107 5.39417 5.45255 5.61019 5.65540 5.68634 5.79569 5.80952 5.85590 5.86621 5.97751 5.99575 6.05680 6.17333 6.22199 6.30232 6.37126 6.41991 6.45882 6.54885 6.60248 6.65334 6.68567 6.76348 6.79362 6.98514 7.48516 7.57008 7.91324 8.18201 8.29687 8.91187 9.70032 10.06741 11.18474 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.002157 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.223100 B =12978.495946 C =13111.187001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.256 4.256 7 H 0.087 0.913 8 C 0.023 3.977 9 N -0.906 5.906 10 Si 0.875 3.125 11 H -0.290 1.290 12 H -0.270 1.270 13 H -0.303 1.303 14 C 0.151 3.849 15 C -0.144 4.144 16 C 0.166 3.834 17 H 0.081 0.919 18 N -0.719 5.719 19 C 0.496 3.504 20 O -0.510 6.510 21 C 0.115 3.885 22 N -0.360 5.360 23 C 0.058 3.942 24 C -0.206 4.206 25 C -0.072 4.072 26 C -0.176 4.176 27 C -0.177 4.177 28 C 0.045 3.955 29 N -0.259 5.259 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.055 0.945 36 H 0.026 0.974 37 H 0.077 0.923 38 H 0.262 0.738 39 H 0.066 0.934 40 H 0.024 0.976 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.397 0.603 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.172 0.828 47 H 0.107 0.893 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.090 0.254 -25.010 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.092 4.092 3 C -0.187 4.187 4 C 0.014 3.986 5 N -0.325 5.325 6 C -0.384 4.384 7 H 0.105 0.895 8 C -0.175 4.175 9 N -0.549 5.549 10 Si 0.705 3.295 11 H -0.218 1.218 12 H -0.195 1.195 13 H -0.232 1.232 14 C 0.024 3.976 15 C -0.184 4.184 16 C 0.063 3.937 17 H 0.099 0.901 18 N -0.372 5.372 19 C 0.279 3.721 20 O -0.384 6.384 21 C -0.011 4.011 22 N -0.142 5.142 23 C -0.087 4.087 24 C -0.217 4.217 25 C -0.091 4.091 26 C -0.214 4.214 27 C -0.214 4.214 28 C -0.143 4.143 29 N -0.078 5.078 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.232 0.768 44 H 0.140 0.860 45 H 0.131 0.869 46 H 0.189 0.811 47 H 0.125 0.875 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.112 0.888 52 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -11.800 -0.135 -23.988 26.733 hybrid contribution -1.770 -0.272 0.028 1.791 sum -13.570 -0.407 -23.959 27.538 Atomic orbital electron populations 1.21828 0.95123 1.01487 1.01262 1.21377 0.94574 0.97206 0.96057 1.21769 1.03185 0.93878 0.99859 1.21385 0.84994 0.96962 0.95212 1.44368 1.00527 1.70121 1.17521 1.18908 0.97373 1.36508 0.85599 0.89540 1.25201 0.97819 0.98712 0.95797 1.69849 1.43241 1.36332 1.05452 0.87066 0.82756 0.82609 0.77045 1.21759 1.19465 1.23150 1.20803 0.97350 0.94260 0.85175 1.22370 0.94490 1.02084 0.99499 1.20956 0.94061 0.96608 0.82081 0.90059 1.46223 1.66349 1.14462 1.10145 1.20427 0.79488 0.87818 0.84391 1.90799 1.48006 1.15699 1.83889 1.21514 1.04898 0.90625 0.84046 1.47923 1.07197 1.33430 1.25612 1.22155 0.93099 0.99435 0.94047 1.19235 0.94670 1.05058 1.02766 1.20152 0.97667 1.01559 0.89762 1.22960 1.02609 0.91662 1.04122 1.23016 1.03434 0.99909 0.95081 1.23734 0.94548 0.99753 0.96218 1.77546 1.09936 1.07926 1.12431 0.92430 0.93166 0.92999 0.90507 0.94667 0.92591 0.95597 0.90486 0.92822 0.91558 0.95806 0.92199 0.91345 0.76807 0.85976 0.86875 0.81067 0.87461 0.88658 0.88712 0.88879 0.88814 0.80474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.31 37.16 0.31 -1.58 16 2 C -0.09 -1.44 0.56 -154.39 -0.09 -1.53 16 3 C -0.13 -2.01 7.83 37.16 0.29 -1.72 16 4 C 0.14 2.95 2.89 -3.71 -0.01 2.94 16 5 N -0.60 -13.82 2.24 -172.58 -0.39 -14.20 16 6 C -0.26 -6.92 10.05 -15.06 -0.15 -7.07 16 7 H 0.09 2.51 8.04 -52.49 -0.42 2.08 16 8 C 0.02 0.66 5.22 -17.43 -0.09 0.57 16 9 N -0.91 -27.21 13.97 55.49 0.78 -26.44 16 10 Si 0.87 22.04 24.36 -169.99 -4.14 17.89 16 11 H -0.29 -6.99 6.68 56.52 0.38 -6.61 16 12 H -0.27 -6.75 6.53 56.52 0.37 -6.38 16 13 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 14 C 0.15 3.00 6.49 -3.93 -0.03 2.97 16 15 C -0.14 -2.44 5.29 -26.83 -0.14 -2.58 16 16 C 0.17 2.59 1.57 -67.89 -0.11 2.48 16 17 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 18 N -0.72 -8.54 4.29 -53.77 -0.23 -8.77 16 19 C 0.50 6.39 7.82 -10.98 -0.09 6.30 16 20 O -0.51 -9.16 15.37 5.56 0.09 -9.08 16 21 C 0.11 1.00 6.99 -5.19 -0.04 0.96 16 22 N -0.36 -4.12 3.40 -62.55 -0.21 -4.33 16 23 C 0.06 0.54 11.36 -17.23 -0.20 0.35 16 24 C -0.21 -2.05 5.76 -105.05 -0.61 -2.66 16 25 C -0.07 -0.55 6.25 -91.77 -0.57 -1.13 16 26 C -0.18 -1.20 10.02 -26.74 -0.27 -1.47 16 27 C -0.18 -1.16 10.23 -26.73 -0.27 -1.43 16 28 C 0.04 0.52 11.35 -17.36 -0.20 0.33 16 29 N -0.26 -3.68 11.64 30.63 0.36 -3.32 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.54 7.37 -51.93 -0.38 0.16 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.38 5.97 -51.93 -0.31 1.07 16 34 H 0.03 0.41 6.58 -51.93 -0.34 0.07 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.03 0.56 7.08 -51.93 -0.37 0.19 16 37 H 0.08 1.78 4.38 -51.93 -0.23 1.55 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.07 1.32 7.92 -51.92 -0.41 0.90 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.15 6.34 -51.93 -0.33 0.82 16 43 H 0.40 3.57 6.66 -40.82 -0.27 3.30 16 44 H 0.12 0.57 8.07 -51.93 -0.42 0.15 16 45 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 47 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 0.65 6.97 -51.93 -0.36 0.29 16 49 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 52 H 0.18 1.64 7.19 -52.49 -0.38 1.27 16 LS Contribution 401.53 15.07 6.05 6.05 Total: -1.00 -34.98 401.53 -8.41 -43.39 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.46 Total: 3.07 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.25 Total: -4.27 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.30 Total: -57.06 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.98 -8.41 -43.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940850265.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.791 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds