Wall clock time and date at job start Wed Apr 1 2020 04:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.52382 * 2 1 4 4 C 1.53195 * 109.49736 * 120.08193 * 2 1 3 5 5 N 1.46925 * 108.77529 * 174.58849 * 4 2 1 6 6 C 1.36939 * 120.63374 * 126.36528 * 5 4 2 7 7 H 1.07999 * 120.00256 * 205.10094 * 6 5 4 8 8 C 1.38817 * 119.99653 * 25.10295 * 6 5 4 9 9 N 1.31615 * 120.00027 * 202.47368 * 8 6 5 10 10 Si 1.86799 * 120.00080 * 22.46567 * 8 6 5 11 11 H 1.48501 * 109.47227 * 264.61906 * 10 8 6 12 12 H 1.48507 * 109.47013 * 24.61697 * 10 8 6 13 13 H 1.48500 * 109.47047 * 144.61775 * 10 8 6 14 14 C 1.46925 * 118.73730 * 306.64378 * 5 4 2 15 15 C 1.52758 * 109.01062 * 53.30908 * 14 5 4 16 16 C 1.53035 * 109.49736 * 239.92140 * 2 1 3 17 17 H 1.09000 * 109.46259 * 298.69992 * 16 2 1 18 18 N 1.46496 * 109.46274 * 58.67379 * 16 2 1 19 19 C 1.34784 * 120.00347 * 204.99653 * 18 16 2 20 20 O 1.21280 * 119.99485 * 0.02562 * 19 18 16 21 21 C 1.50695 * 119.99932 * 180.02562 * 19 18 16 22 22 N 1.46507 * 109.46832 * 180.02562 * 21 19 18 23 23 C 1.34943 * 126.03794 * 124.71794 * 22 21 19 24 24 C 1.35314 * 107.74680 * 179.84169 * 23 22 21 25 25 C 1.50703 * 126.04336 * 180.16055 * 24 23 22 26 26 C 1.52993 * 117.49947 * 188.89989 * 25 24 23 27 27 C 1.52995 * 60.00153 * 252.50947 * 26 25 24 28 28 C 1.39874 * 107.91818 * 0.41602 * 24 23 22 29 29 N 1.30837 * 108.20259 * 359.74381 * 28 24 23 30 30 H 1.08995 * 109.47141 * 299.91605 * 1 2 3 31 31 H 1.09003 * 109.47244 * 59.91785 * 1 2 3 32 32 H 1.09007 * 109.47147 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47579 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47153 * 300.08710 * 3 2 1 35 35 H 1.09004 * 109.47249 * 60.07927 * 3 2 1 36 36 H 1.08997 * 109.58681 * 54.80289 * 4 2 1 37 37 H 1.09007 * 109.58318 * 294.37178 * 4 2 1 38 38 H 0.96995 * 120.00385 * 180.02562 * 9 8 6 39 39 H 1.09008 * 109.58687 * 173.14309 * 14 5 4 40 40 H 1.08993 * 109.58516 * 293.56677 * 14 5 4 41 41 H 1.09000 * 109.56519 * 185.55204 * 15 14 5 42 42 H 1.08998 * 109.38826 * 65.51666 * 15 14 5 43 43 H 0.96999 * 119.99840 * 25.00828 * 18 16 2 44 44 H 1.09001 * 109.47376 * 299.99959 * 21 19 18 45 45 H 1.08997 * 109.47237 * 60.00530 * 21 19 18 46 46 H 1.08000 * 126.12659 * 359.97438 * 23 22 21 47 47 H 1.08997 * 115.54295 * 334.61194 * 25 24 23 48 48 H 1.09000 * 117.50158 * 359.97438 * 26 25 24 49 49 H 1.09001 * 117.50094 * 145.02030 * 26 25 24 50 50 H 1.09002 * 117.50216 * 252.51072 * 27 26 25 51 51 H 1.09010 * 117.51655 * 107.48302 * 27 26 25 52 52 H 1.08000 * 125.89662 * 179.71749 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2936 -0.3784 2.1941 7 1 5.3126 -0.0783 1.9991 8 6 3.7837 -0.3074 3.4832 9 7 4.3315 0.5029 4.3639 10 14 2.3199 -1.3617 3.9681 11 1 1.0706 -0.5727 3.8195 12 1 2.2579 -2.5570 3.0889 13 1 2.4674 -1.7937 5.3812 14 6 4.1055 -1.4215 -0.0332 15 6 3.5708 -0.6950 -1.2660 16 6 2.0407 -0.7230 -1.2483 17 1 1.6967 -1.7572 -1.2353 18 7 1.5267 -0.0527 -2.4453 19 6 1.3987 -0.7379 -3.5989 20 8 1.7087 -1.9095 -3.6458 21 6 0.8705 -0.0482 -4.8302 22 7 0.8268 -1.0006 -5.9426 23 6 -0.2573 -1.3022 -6.6874 24 6 0.1180 -2.2183 -7.6099 25 6 -0.7713 -2.8381 -8.6568 26 6 -0.2019 -4.0044 -9.4669 27 6 -0.3843 -2.6344 -10.1230 28 6 1.4758 -2.4928 -7.4162 29 7 1.9017 -1.7634 -6.4170 30 1 -0.3633 0.5125 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1312 1.4411 -0.0005 34 1 1.6772 1.9566 -0.8892 35 1 1.6796 1.9558 0.8907 36 1 1.6053 -1.7216 1.2980 37 1 1.7637 -0.1579 2.1389 38 1 3.9755 0.5522 5.2648 39 1 5.1896 -1.3158 0.0100 40 1 3.8412 -2.4773 -0.0915 41 1 3.9334 -1.1896 -2.1670 42 1 3.9159 0.3389 -1.2546 43 1 1.2786 0.8842 -2.4076 44 1 -0.1339 0.3270 -4.6339 45 1 1.5249 0.7840 -5.0895 46 1 -1.2466 -0.8854 -6.5698 47 1 -1.8340 -2.8636 -8.4156 48 1 0.8160 -4.3233 -9.2429 49 1 -0.8900 -4.7978 -9.7587 50 1 -1.1924 -2.5264 -10.8465 51 1 0.5134 -2.0518 -10.3304 52 1 2.0698 -3.1872 -7.9918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940850265.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:35 Heat of formation + Delta-G solvation = 76.483405 kcal Electronic energy + Delta-G solvation = -31073.897360 eV Core-core repulsion = 27076.085811 eV Total energy + Delta-G solvation = -3997.811549 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.26554 -41.37020 -39.67565 -37.81027 -36.40911 -34.48658 -34.11432 -33.88805 -31.90882 -31.01201 -28.69313 -28.20221 -27.75108 -26.52587 -24.41122 -23.77805 -23.15447 -22.37719 -22.21059 -21.41331 -20.62604 -19.97456 -18.98693 -18.16876 -17.92466 -17.24971 -16.75972 -16.47912 -16.24657 -16.10332 -15.85678 -15.37602 -15.26240 -15.12062 -14.94277 -14.87847 -14.48448 -14.46198 -14.19705 -13.84278 -13.62607 -13.33287 -13.23629 -13.03760 -12.87987 -12.81007 -12.65469 -12.43645 -12.32146 -12.27395 -12.08780 -11.86496 -11.73947 -11.55412 -11.45559 -11.37445 -11.23739 -11.12490 -11.07455 -10.70506 -10.28469 -10.03204 -9.09647 -8.98982 -8.16903 -5.45460 0.94171 1.25044 1.39434 1.46930 1.51118 1.58137 1.82574 2.19154 2.39023 3.02190 3.21922 3.29336 3.53523 3.59542 3.73799 3.85305 3.93403 4.00331 4.05592 4.14393 4.19600 4.24690 4.28234 4.29425 4.31841 4.45484 4.54532 4.55926 4.64306 4.74021 4.78562 4.81354 4.83900 4.89477 4.91661 4.98050 5.03147 5.09362 5.09696 5.17944 5.18776 5.28764 5.35279 5.37112 5.43135 5.48780 5.63980 5.70321 5.84313 6.10045 6.11334 6.56571 6.79457 6.88426 7.25326 7.60584 8.00647 9.02575 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.002157 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.223100 B =12978.495946 C =13111.187001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 C -0.125 4.125 4 C 0.134 3.866 5 N -0.612 5.612 6 C -0.240 4.240 7 H 0.055 0.945 8 C -0.029 4.029 9 N -0.951 5.951 10 Si 0.934 3.066 11 H -0.271 1.271 12 H -0.270 1.270 13 H -0.312 1.312 14 C 0.147 3.853 15 C -0.131 4.131 16 C 0.179 3.821 17 H 0.059 0.941 18 N -0.703 5.703 19 C 0.495 3.505 20 O -0.566 6.566 21 C 0.116 3.884 22 N -0.368 5.368 23 C 0.063 3.937 24 C -0.219 4.219 25 C -0.079 4.079 26 C -0.182 4.182 27 C -0.169 4.169 28 C 0.033 3.967 29 N -0.316 5.316 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.261 0.739 39 H 0.058 0.942 40 H 0.021 0.979 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.416 0.584 44 H 0.175 0.825 45 H 0.137 0.863 46 H 0.214 0.786 47 H 0.122 0.878 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.109 0.891 51 H 0.085 0.915 52 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.750 1.416 -27.608 32.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.083 4.083 3 C -0.183 4.183 4 C 0.009 3.991 5 N -0.336 5.336 6 C -0.370 4.370 7 H 0.073 0.927 8 C -0.224 4.224 9 N -0.597 5.597 10 Si 0.763 3.237 11 H -0.197 1.197 12 H -0.195 1.195 13 H -0.241 1.241 14 C 0.021 3.979 15 C -0.171 4.171 16 C 0.074 3.926 17 H 0.077 0.923 18 N -0.357 5.357 19 C 0.281 3.719 20 O -0.443 6.443 21 C -0.008 4.008 22 N -0.151 5.151 23 C -0.082 4.082 24 C -0.230 4.230 25 C -0.098 4.098 26 C -0.219 4.219 27 C -0.207 4.207 28 C -0.154 4.154 29 N -0.137 5.137 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.255 0.745 44 H 0.192 0.808 45 H 0.155 0.845 46 H 0.230 0.770 47 H 0.140 0.860 48 H 0.106 0.894 49 H 0.124 0.876 50 H 0.127 0.873 51 H 0.104 0.896 52 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -15.495 1.053 -26.638 30.835 hybrid contribution -0.543 -0.661 0.752 1.139 sum -16.039 0.392 -25.886 30.455 Atomic orbital electron populations 1.21816 0.92356 1.01968 1.03171 1.21207 0.96665 0.96804 0.93630 1.21719 1.01273 0.93644 1.01618 1.21438 0.83558 0.96975 0.97152 1.44426 1.01391 1.70500 1.17263 1.18818 0.96613 1.34778 0.86754 0.92692 1.25719 1.00891 0.99934 0.95895 1.69959 1.45610 1.38332 1.05830 0.86103 0.80778 0.80984 0.75790 1.19741 1.19467 1.24149 1.20892 0.97088 0.94403 0.85512 1.22171 0.95884 1.01617 0.97388 1.20509 0.92714 0.95850 0.83512 0.92292 1.45910 1.65765 1.15163 1.08839 1.21206 0.78177 0.87186 0.85345 1.90792 1.50346 1.18411 1.84770 1.21838 1.08146 0.89836 0.80986 1.48141 1.07062 1.33609 1.26244 1.22842 0.94002 0.98487 0.92852 1.19569 0.94201 1.05528 1.03749 1.20244 0.97988 1.01882 0.89671 1.23034 1.02561 0.92143 1.04182 1.23033 1.03533 0.99309 0.94790 1.24026 0.95847 0.99611 0.95900 1.77450 1.12259 1.09917 1.14027 0.92414 0.89396 0.93302 0.93464 0.89951 0.93793 0.96145 0.92516 0.92995 0.92359 0.96103 0.92411 0.90905 0.74527 0.80821 0.84505 0.76982 0.85985 0.89373 0.87588 0.87313 0.89615 0.79884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.31 71.98 0.60 -2.57 16 2 C -0.08 -2.43 0.56 -52.11 -0.03 -2.46 16 3 C -0.13 -3.58 7.83 71.98 0.56 -3.02 16 4 C 0.13 5.55 2.89 86.36 0.25 5.80 16 5 N -0.61 -28.54 2.24 -699.92 -1.57 -30.11 16 6 C -0.24 -13.44 10.05 84.03 0.84 -12.60 16 7 H 0.06 3.36 8.04 -2.91 -0.02 3.34 16 8 C -0.03 -1.71 5.22 84.86 0.44 -1.26 16 9 N -0.95 -59.00 13.97 21.65 0.30 -58.70 16 10 Si 0.93 46.50 24.36 68.60 1.67 48.17 16 11 H -0.27 -12.52 6.68 99.48 0.67 -11.86 16 12 H -0.27 -13.25 6.53 99.48 0.65 -12.60 16 13 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 14 C 0.15 5.97 6.49 86.22 0.56 6.53 16 15 C -0.13 -4.35 5.29 30.53 0.16 -4.19 16 16 C 0.18 5.25 1.57 45.02 0.07 5.32 16 17 H 0.06 2.05 7.58 -2.39 -0.02 2.04 16 18 N -0.70 -14.13 4.29 -442.41 -1.90 -16.03 16 19 C 0.50 11.30 7.82 87.65 0.69 11.99 16 20 O -0.57 -19.77 15.37 -3.03 -0.05 -19.82 16 21 C 0.12 1.50 6.99 85.63 0.60 2.10 16 22 N -0.37 -7.42 3.40 -351.80 -1.20 -8.61 16 23 C 0.06 0.97 11.36 83.54 0.95 1.92 16 24 C -0.22 -3.97 5.76 -20.14 -0.12 -4.09 16 25 C -0.08 -1.03 6.25 -11.54 -0.07 -1.10 16 26 C -0.18 -2.23 10.02 30.59 0.31 -1.92 16 27 C -0.17 -1.89 10.23 30.59 0.31 -1.58 16 28 C 0.03 0.75 11.35 85.24 0.97 1.72 16 29 N -0.32 -8.80 11.64 -57.02 -0.66 -9.47 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.40 7.37 -2.39 -0.02 1.39 16 32 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.05 1.64 5.97 -2.39 -0.01 1.63 16 34 H 0.08 1.54 6.58 -2.39 -0.02 1.53 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.02 0.87 7.08 -2.39 -0.02 0.86 16 37 H 0.06 2.58 4.38 -2.38 -0.01 2.57 16 38 H 0.26 15.44 8.31 -92.71 -0.77 14.66 16 39 H 0.06 2.41 7.92 -2.38 -0.02 2.39 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 42 H 0.07 2.37 6.34 -2.39 -0.02 2.36 16 43 H 0.42 5.21 6.66 -92.71 -0.62 4.59 16 44 H 0.17 0.42 8.07 -2.39 -0.02 0.40 16 45 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.21 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.09 1.18 6.97 -2.39 -0.02 1.16 16 49 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 52 H 0.18 3.55 7.19 -2.91 -0.02 3.53 16 Total: -1.00 -81.92 401.53 3.90 -78.01 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.21 Total: 15.96 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 7.09 Total: 0.59 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -5.02 Total: -122.92 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.67 Total: 48.17 kcal Total: -81.92 3.90 -78.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940850265.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.497 kcal (2) G-P(sol) polarization free energy of solvation -81.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds