Wall clock time and date at job start Wed Apr 1 2020 04:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.52070 * 2 1 4 4 C 1.53193 * 109.49624 * 239.91784 * 2 1 3 5 5 N 1.46923 * 108.77497 * 185.40879 * 4 2 1 6 6 C 1.36936 * 120.63549 * 233.63038 * 5 4 2 7 7 H 1.08003 * 119.99852 * 151.83847 * 6 5 4 8 8 C 1.38806 * 119.99642 * 331.84190 * 6 5 4 9 9 N 1.31620 * 120.00350 * 343.06497 * 8 6 5 10 10 Si 1.86804 * 119.99660 * 163.06637 * 8 6 5 11 11 H 1.48502 * 109.47026 * 90.00137 * 10 8 6 12 12 H 1.48498 * 109.47090 * 209.99802 * 10 8 6 13 13 H 1.48492 * 109.47036 * 329.99972 * 10 8 6 14 14 C 1.46931 * 118.73464 * 53.61157 * 5 4 2 15 15 C 1.53190 * 108.77428 * 306.39101 * 14 5 4 16 16 C 1.53035 * 109.49538 * 120.07975 * 2 1 3 17 17 H 1.09008 * 109.46004 * 61.31285 * 16 2 1 18 18 N 1.46497 * 109.46412 * 301.33603 * 16 2 1 19 19 C 1.34772 * 120.00322 * 155.00028 * 18 16 2 20 20 O 1.21288 * 119.99858 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00302 * 180.02562 * 19 18 16 22 22 N 1.46503 * 109.47211 * 180.02562 * 21 19 18 23 23 C 1.34947 * 126.03586 * 125.26038 * 22 21 19 24 24 C 1.35311 * 107.74583 * 180.14643 * 23 22 21 25 25 C 1.50699 * 126.04366 * 179.87513 * 24 23 22 26 26 C 1.53003 * 117.50087 * 239.72015 * 25 24 23 27 27 C 1.53002 * 117.50477 * 171.09508 * 25 24 23 28 28 C 1.39870 * 107.92154 * 359.61207 * 24 23 22 29 29 N 1.30841 * 108.19967 * 0.23927 * 28 24 23 30 30 H 1.09004 * 109.47001 * 299.91839 * 1 2 3 31 31 H 1.08997 * 109.47390 * 59.92231 * 1 2 3 32 32 H 1.09004 * 109.46890 * 179.91824 * 1 2 3 33 33 H 1.08998 * 109.47072 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47427 * 300.07899 * 3 2 1 35 35 H 1.08999 * 109.47437 * 60.08434 * 3 2 1 36 36 H 1.08996 * 109.58920 * 305.20163 * 4 2 1 37 37 H 1.09006 * 109.58408 * 65.48421 * 4 2 1 38 38 H 0.97002 * 119.99546 * 180.02562 * 9 8 6 39 39 H 1.09006 * 109.58501 * 66.17756 * 14 5 4 40 40 H 1.09000 * 109.58656 * 186.45654 * 14 5 4 41 41 H 1.08999 * 109.49800 * 294.67593 * 15 14 5 42 42 H 1.09008 * 109.49604 * 174.58658 * 15 14 5 43 43 H 0.97004 * 120.00204 * 335.00509 * 18 16 2 44 44 H 1.09000 * 109.46683 * 60.00457 * 21 19 18 45 45 H 1.09001 * 109.47347 * 300.00349 * 21 19 18 46 46 H 1.07998 * 126.12622 * 0.02562 * 23 22 21 47 47 H 1.08995 * 115.56057 * 25.40414 * 25 24 23 48 48 H 1.08993 * 117.50080 * 145.01516 * 26 25 24 49 49 H 1.09001 * 117.49900 * 359.97438 * 26 25 24 50 50 H 1.09000 * 117.49200 * 359.97438 * 27 25 24 51 51 H 1.08997 * 117.51781 * 214.97546 * 27 25 24 52 52 H 1.08003 * 125.90451 * 180.25948 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8291 -1.1696 6 6 4.2936 -0.3785 -2.1941 7 1 5.2961 -0.0318 -1.9913 8 6 3.8048 -0.3673 -3.4932 9 7 2.7417 -1.0790 -3.8026 10 14 4.6559 0.6578 -4.8026 11 1 5.7026 -0.1590 -5.4679 12 1 3.6589 1.1008 -5.8100 13 1 5.2827 1.8464 -4.1706 14 6 4.1053 -1.4266 0.0307 15 6 3.5708 -0.6950 1.2659 16 6 2.0408 -0.7230 1.2483 17 1 1.6969 -1.7574 1.2351 18 7 1.5265 -0.0529 2.4453 19 6 1.3985 -0.7382 3.5987 20 8 1.7094 -1.9096 3.6459 21 6 0.8689 -0.0490 4.8298 22 7 0.8266 -1.0012 5.9424 23 6 1.4054 -0.8369 7.1504 24 6 1.1368 -1.9381 7.8895 25 6 1.5891 -2.1877 9.3052 26 6 2.4607 -3.4189 9.5617 27 6 1.0042 -3.4015 10.0302 28 6 0.3601 -2.8011 7.1096 29 7 0.1735 -2.2404 5.9422 30 1 -0.3633 0.5126 0.8908 31 1 -0.3634 0.5150 -0.8892 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1313 1.4411 -0.0005 34 1 1.6773 1.9566 -0.8893 35 1 1.6797 1.9558 0.8907 36 1 1.6053 -1.7216 -1.2980 37 1 1.7616 -0.1592 -2.1391 38 1 2.4004 -1.0714 -4.7105 39 1 3.8375 -2.4818 0.0867 40 1 5.1898 -1.3268 -0.0150 41 1 3.9160 0.3389 1.2541 42 1 3.9334 -1.1897 2.1671 43 1 1.2781 0.8840 2.4077 44 1 -0.1357 0.3251 4.6329 45 1 1.5225 0.7838 5.0895 46 1 1.9814 0.0191 7.4693 47 1 1.7907 -1.2960 9.8987 48 1 3.2355 -3.3371 10.3238 49 1 2.7065 -4.0485 8.7065 50 1 0.2919 -4.0192 9.4832 51 1 0.8209 -3.3086 11.1006 52 1 -0.0203 -3.7638 7.4178 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940850266.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:39 Heat of formation + Delta-G solvation = 71.777229 kcal Electronic energy + Delta-G solvation = -30991.745200 eV Core-core repulsion = 26993.729576 eV Total energy + Delta-G solvation = -3998.015624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.25994 -41.26159 -39.52938 -37.80639 -36.28665 -34.42059 -34.04345 -33.75013 -31.36370 -30.95549 -28.61511 -28.12456 -27.62487 -26.52140 -24.14419 -23.77364 -23.15019 -22.33795 -22.24981 -21.39325 -20.60632 -19.66308 -18.89699 -18.11594 -17.84573 -16.96993 -16.74047 -16.66281 -16.10891 -15.79766 -15.59092 -15.36479 -15.28198 -15.01349 -14.98703 -14.87756 -14.41732 -14.29220 -13.90220 -13.71336 -13.31603 -13.23967 -13.05768 -12.90156 -12.84321 -12.71626 -12.60771 -12.44416 -12.34121 -12.27824 -11.94196 -11.84652 -11.67451 -11.65234 -11.43487 -11.33232 -11.23764 -11.13101 -10.97684 -10.54757 -10.29515 -9.98768 -9.09160 -8.69124 -7.87388 -5.32999 0.94655 1.46759 1.48213 1.51594 1.57873 1.59441 1.82500 2.21174 2.51053 3.21318 3.27969 3.54519 3.62485 3.69910 3.77461 3.94993 4.02213 4.05940 4.10543 4.15249 4.19615 4.28800 4.30919 4.32729 4.43966 4.54480 4.57353 4.64190 4.77487 4.80580 4.85566 4.89117 4.95688 4.95943 5.02431 5.09423 5.09898 5.17790 5.24897 5.28820 5.34478 5.36564 5.42861 5.43606 5.54582 5.60548 5.70230 5.70733 5.74696 6.10623 6.38497 6.58982 6.79664 7.14266 7.27654 7.83578 8.37350 9.19409 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026294 B = 0.002094 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.610054 B =13365.859318 C =13736.749959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.120 4.120 4 C 0.194 3.806 5 N -0.602 5.602 6 C -0.256 4.256 7 H 0.068 0.932 8 C -0.050 4.050 9 N -0.936 5.936 10 Si 0.966 3.034 11 H -0.289 1.289 12 H -0.293 1.293 13 H -0.266 1.266 14 C 0.142 3.858 15 C -0.124 4.124 16 C 0.180 3.820 17 H 0.042 0.958 18 N -0.702 5.702 19 C 0.493 3.507 20 O -0.569 6.569 21 C 0.117 3.883 22 N -0.368 5.368 23 C 0.063 3.937 24 C -0.219 4.219 25 C -0.075 4.075 26 C -0.183 4.183 27 C -0.173 4.173 28 C 0.032 3.968 29 N -0.317 5.317 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.078 0.922 36 H -0.021 1.021 37 H 0.064 0.936 38 H 0.249 0.751 39 H -0.004 1.004 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.416 0.584 44 H 0.139 0.861 45 H 0.174 0.826 46 H 0.214 0.786 47 H 0.128 0.872 48 H 0.108 0.892 49 H 0.075 0.925 50 H 0.089 0.911 51 H 0.111 0.889 52 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 8.257 26.764 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C -0.177 4.177 4 C 0.068 3.932 5 N -0.324 5.324 6 C -0.386 4.386 7 H 0.085 0.915 8 C -0.245 4.245 9 N -0.582 5.582 10 Si 0.794 3.206 11 H -0.216 1.216 12 H -0.219 1.219 13 H -0.191 1.191 14 C 0.016 3.984 15 C -0.164 4.164 16 C 0.075 3.925 17 H 0.060 0.940 18 N -0.356 5.356 19 C 0.279 3.721 20 O -0.447 6.447 21 C -0.007 4.007 22 N -0.150 5.150 23 C -0.082 4.082 24 C -0.231 4.231 25 C -0.094 4.094 26 C -0.220 4.220 27 C -0.210 4.210 28 C -0.154 4.154 29 N -0.138 5.138 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.097 0.903 36 H -0.003 1.003 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.014 0.986 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.255 0.745 44 H 0.157 0.843 45 H 0.191 0.809 46 H 0.231 0.769 47 H 0.146 0.854 48 H 0.126 0.874 49 H 0.094 0.906 50 H 0.107 0.893 51 H 0.129 0.871 52 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.649 7.407 25.351 27.008 hybrid contribution 0.640 -0.146 -0.840 1.066 sum -5.009 7.261 24.511 26.050 Atomic orbital electron populations 1.21728 0.93456 1.00984 1.02493 1.21325 0.95907 0.97230 0.94366 1.21673 1.01343 0.93325 1.01359 1.20610 0.82548 0.94884 0.95157 1.44266 1.02096 1.69510 1.16575 1.19453 0.98267 1.34469 0.86429 0.91465 1.25790 0.99424 1.00275 0.98988 1.70198 1.27326 1.41918 1.18795 0.85309 0.77377 0.79055 0.78891 1.21640 1.21931 1.19105 1.20966 0.96900 0.93525 0.87001 1.22206 0.95371 1.01665 0.97174 1.20496 0.93071 0.95225 0.83726 0.93959 1.45931 1.65665 1.15106 1.08864 1.21260 0.78032 0.87183 0.85661 1.90793 1.50528 1.18309 1.85048 1.21836 1.06950 0.89905 0.82009 1.48133 1.40970 1.14705 1.11235 1.22854 0.98904 1.01471 0.84941 1.19575 1.09071 0.96370 0.98055 1.20261 1.04046 0.93820 0.91238 1.23030 0.94572 1.01213 1.03175 1.23033 0.96085 1.00820 1.01098 1.24035 0.99505 1.00902 0.90989 1.77448 1.19810 0.94916 1.21600 0.90096 0.92547 0.94693 0.92970 0.93758 0.90343 1.00287 0.91778 0.94153 0.98575 0.92342 0.90184 0.92838 0.74536 0.84308 0.80879 0.76931 0.85419 0.87365 0.90633 0.89259 0.87069 0.79859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.31 71.98 0.60 -3.17 16 2 C -0.09 -2.93 0.56 -52.10 -0.03 -2.96 16 3 C -0.12 -3.53 7.83 71.98 0.56 -2.96 16 4 C 0.19 9.24 3.98 86.36 0.34 9.58 16 5 N -0.60 -29.98 2.43 -699.09 -1.70 -31.68 16 6 C -0.26 -13.83 9.58 84.03 0.81 -13.02 16 7 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 8 C -0.05 -2.73 4.92 84.86 0.42 -2.32 16 9 N -0.94 -55.31 11.19 21.65 0.24 -55.07 16 10 Si 0.97 44.24 29.59 68.60 2.03 46.27 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 14 C 0.14 6.24 6.52 86.36 0.56 6.80 16 15 C -0.12 -4.34 5.31 30.67 0.16 -4.18 16 16 C 0.18 5.96 1.57 45.02 0.07 6.03 16 17 H 0.04 1.76 7.58 -2.38 -0.02 1.74 16 18 N -0.70 -16.08 4.29 -442.41 -1.90 -17.98 16 19 C 0.49 12.55 7.82 87.66 0.69 13.23 16 20 O -0.57 -21.69 15.37 -3.06 -0.05 -21.73 16 21 C 0.12 1.72 6.99 85.63 0.60 2.32 16 22 N -0.37 -7.98 3.40 -351.79 -1.20 -9.18 16 23 C 0.06 1.06 11.36 83.54 0.95 2.00 16 24 C -0.22 -4.22 5.76 -20.15 -0.12 -4.34 16 25 C -0.07 -1.04 6.25 -11.54 -0.07 -1.11 16 26 C -0.18 -2.59 10.23 30.60 0.31 -2.28 16 27 C -0.17 -2.17 10.02 30.60 0.31 -1.87 16 28 C 0.03 0.78 11.35 85.24 0.97 1.75 16 29 N -0.32 -9.31 11.64 -57.02 -0.66 -9.97 16 30 H 0.08 1.75 7.36 -2.38 -0.02 1.73 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.76 5.97 -2.39 -0.01 1.74 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.53 6.58 -2.39 -0.02 1.52 16 36 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 37 H 0.06 3.41 6.06 -2.38 -0.01 3.40 16 38 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 39 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 40 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 41 H 0.08 2.57 6.33 -2.39 -0.02 2.56 16 42 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.42 6.14 6.66 -92.71 -0.62 5.53 16 44 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.17 0.75 8.07 -2.39 -0.02 0.73 16 46 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 47 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 49 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.09 1.20 6.97 -2.39 -0.02 1.18 16 51 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.18 3.76 7.19 -2.91 -0.02 3.74 16 Total: -1.00 -80.68 408.14 4.20 -76.48 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.30 Total: 19.35 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 7.13 Total: 3.51 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -5.21 Total: -123.87 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -80.68 4.20 -76.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940850266.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.259 kcal (2) G-P(sol) polarization free energy of solvation -80.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds