Wall clock time and date at job start Wed Apr 1 2020 04:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.50182 * 2 1 4 4 C 1.53199 * 109.49816 * 239.90030 * 2 1 3 5 5 N 1.46924 * 108.77575 * 185.41482 * 4 2 1 6 6 C 1.36944 * 120.63001 * 233.58958 * 5 4 2 7 7 H 1.07998 * 119.99606 * 152.60042 * 6 5 4 8 8 C 1.38812 * 119.99895 * 332.59483 * 6 5 4 9 9 N 1.31622 * 119.99738 * 159.31395 * 8 6 5 10 10 Si 1.86804 * 120.00147 * 339.32077 * 8 6 5 11 11 H 1.48498 * 109.47237 * 92.94790 * 10 8 6 12 12 H 1.48502 * 109.47090 * 212.94607 * 10 8 6 13 13 H 1.48502 * 109.46879 * 332.94925 * 10 8 6 14 14 C 1.46928 * 118.73963 * 53.61107 * 5 4 2 15 15 C 1.53185 * 108.77268 * 306.39097 * 14 5 4 16 16 C 1.53039 * 109.31754 * 54.63656 * 15 14 5 17 17 H 1.08999 * 109.44995 * 58.64499 * 16 15 14 18 18 N 1.46502 * 109.46397 * 178.61243 * 16 15 14 19 19 C 1.34776 * 119.99931 * 275.06778 * 18 16 15 20 20 O 1.21286 * 119.99737 * 359.97438 * 19 18 16 21 21 C 1.50695 * 120.00015 * 179.97438 * 19 18 16 22 22 H 1.09007 * 109.43137 * 60.09690 * 21 19 18 23 23 C 1.53113 * 109.43141 * 179.97438 * 21 19 18 24 24 C 1.53494 * 109.30847 * 189.97897 * 23 21 19 25 25 C 1.50713 * 108.09842 * 311.26688 * 24 23 21 26 26 C 1.33776 * 128.75572 * 195.73276 * 25 24 23 27 27 N 1.34425 * 107.82791 * 179.97438 * 26 25 24 28 28 C 1.30796 * 109.32038 * 0.02562 * 27 26 25 29 29 N 1.34401 * 108.55131 * 0.05558 * 28 27 26 30 30 C 1.46471 * 128.44532 * 179.83096 * 29 28 27 31 31 H 1.08994 * 109.47042 * 299.93615 * 1 2 3 32 32 H 1.08999 * 109.47337 * 59.93514 * 1 2 3 33 33 H 1.09000 * 109.47573 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47585 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46933 * 300.06891 * 3 2 1 36 36 H 1.09005 * 109.47116 * 60.06290 * 3 2 1 37 37 H 1.09003 * 109.58824 * 305.20639 * 4 2 1 38 38 H 1.09005 * 109.58055 * 65.62926 * 4 2 1 39 39 H 0.96999 * 119.99510 * 179.97438 * 9 8 6 40 40 H 1.09003 * 109.58475 * 66.18065 * 14 5 4 41 41 H 1.08997 * 109.58283 * 186.46014 * 14 5 4 42 42 H 1.09000 * 109.50343 * 294.67812 * 15 14 5 43 43 H 1.09010 * 109.49724 * 174.58403 * 15 14 5 44 44 H 0.97001 * 119.99708 * 95.06531 * 18 16 15 45 45 H 1.09000 * 109.49823 * 70.02848 * 23 21 19 46 46 H 1.09006 * 109.50255 * 309.92761 * 23 21 19 47 47 H 1.09001 * 109.75021 * 70.93475 * 24 23 21 48 48 H 1.09000 * 109.74478 * 191.60388 * 24 23 21 49 49 H 1.08002 * 126.06899 * 359.96567 * 26 25 24 50 50 H 1.07994 * 125.72054 * 180.02562 * 28 27 26 51 51 H 1.09004 * 109.60119 * 77.59081 * 30 29 28 52 52 H 1.09001 * 109.60381 * 317.11750 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 3.5046 -0.8296 -1.1693 6 6 4.2936 -0.3800 -2.1944 7 1 5.3004 -0.0447 -1.9937 8 6 3.7993 -0.3554 -3.4913 9 7 4.3572 0.4238 -4.3935 10 14 2.3422 -1.4279 -3.9560 11 1 1.0857 -0.6532 -3.7941 12 1 2.4776 -1.8614 -5.3699 13 1 2.3049 -2.6217 -3.0736 14 6 4.1053 -1.4268 0.0312 15 6 3.5708 -0.6948 1.2661 16 6 2.0408 -0.7228 1.2486 17 1 1.6968 -1.7570 1.2357 18 7 1.5265 -0.0523 2.4453 19 6 1.3984 -0.7373 3.5990 20 8 1.7085 -1.9089 3.6462 21 6 0.8700 -0.0475 4.8301 22 1 -0.1352 0.3257 4.6334 23 6 0.8247 -1.0434 5.9922 24 6 0.0600 -0.4181 7.1671 25 6 0.6124 0.9643 7.4024 26 6 0.4628 1.7551 8.4709 27 7 1.1335 2.8961 8.2356 28 6 1.6921 2.8340 7.0545 29 7 1.3907 1.6470 6.5009 30 6 1.7867 1.1266 5.1903 31 1 -0.3633 0.5128 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1307 1.4417 -0.0005 35 1 1.6766 1.9566 -0.8894 36 1 1.6786 1.9559 0.8906 37 1 1.6052 -1.7221 -1.2976 38 1 1.7638 -0.1585 -2.1389 39 1 4.0120 0.4407 -5.2998 40 1 3.8375 -2.4819 0.0874 41 1 5.1897 -1.3270 -0.0146 42 1 3.9159 0.3391 1.2540 43 1 3.9334 -1.1892 2.1674 44 1 1.2782 0.8846 2.4074 45 1 1.8407 -1.2832 6.3057 46 1 0.3179 -1.9538 5.6717 47 1 -1.0006 -0.3544 6.9241 48 1 0.1970 -1.0264 8.0611 49 1 -0.0974 1.5188 9.3636 50 1 2.2940 3.6071 6.6003 51 1 2.8207 0.7837 5.2302 52 1 1.6881 1.9113 4.4402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940850721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:21 Heat of formation + Delta-G solvation = 43.086612 kcal Electronic energy + Delta-G solvation = -32010.024486 eV Core-core repulsion = 28010.764744 eV Total energy + Delta-G solvation = -3999.259742 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.65379 -40.51150 -38.77177 -36.48696 -34.94165 -33.47948 -33.07831 -32.19172 -31.18219 -30.01930 -28.17594 -27.03583 -26.36023 -25.55116 -24.80345 -23.27518 -22.36218 -21.71016 -20.65703 -20.49963 -19.47306 -18.73023 -17.68782 -17.30571 -16.76909 -16.12354 -15.91686 -15.43307 -15.11244 -14.60489 -14.51577 -14.43651 -14.29331 -14.14850 -14.03731 -13.79961 -13.64840 -13.45770 -13.32818 -12.86315 -12.56200 -12.39165 -12.13309 -12.08021 -11.86527 -11.80908 -11.59752 -11.37362 -11.33738 -11.21576 -10.86571 -10.78086 -10.53690 -10.29211 -10.25642 -10.04573 -9.96901 -9.84610 -9.73342 -9.51541 -8.95577 -8.68540 -8.62986 -7.05165 -6.01631 -3.37635 1.75228 2.24311 2.52164 2.89098 3.00791 3.24859 3.43736 3.45921 3.88946 4.11124 4.19711 4.34959 4.46157 4.48259 4.68287 4.73383 4.76675 4.82614 4.88478 4.94649 5.05002 5.13630 5.14275 5.18429 5.34783 5.40235 5.44025 5.58024 5.61741 5.65788 5.73583 5.76867 5.81032 5.90638 5.98248 6.05394 6.10963 6.16516 6.21054 6.30166 6.35654 6.44521 6.48805 6.54581 6.59407 6.61670 6.72297 6.88507 6.90859 7.38624 7.78658 7.88627 8.05641 8.26075 8.86641 9.65059 10.02100 11.14201 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023062 B = 0.002561 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.839983 B =10931.869519 C =11203.530789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.129 4.129 4 C 0.140 3.860 5 N -0.603 5.603 6 C -0.258 4.258 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.906 5.906 10 Si 0.877 3.123 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.150 3.850 15 C -0.144 4.144 16 C 0.162 3.838 17 H 0.083 0.917 18 N -0.718 5.718 19 C 0.518 3.482 20 O -0.530 6.530 21 C -0.121 4.121 22 H 0.106 0.894 23 C -0.105 4.105 24 C -0.046 4.046 25 C -0.024 4.024 26 C -0.025 4.025 27 N -0.497 5.497 28 C 0.186 3.814 29 N -0.455 5.455 30 C 0.114 3.886 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.033 0.967 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.263 0.737 40 H 0.024 0.976 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.396 0.604 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.168 0.832 50 H 0.205 0.795 51 H 0.093 0.907 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.689 1.659 20.686 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.187 4.187 4 C 0.013 3.987 5 N -0.325 5.325 6 C -0.386 4.386 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.549 5.549 10 Si 0.708 3.292 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.024 3.976 15 C -0.184 4.184 16 C 0.059 3.941 17 H 0.101 0.899 18 N -0.369 5.369 19 C 0.302 3.698 20 O -0.406 6.406 21 C -0.142 4.142 22 H 0.124 0.876 23 C -0.143 4.143 24 C -0.085 4.085 25 C -0.138 4.138 26 C -0.172 4.172 27 N -0.215 5.215 28 C -0.096 4.096 29 N -0.139 5.139 30 C -0.009 4.009 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.231 0.769 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.186 0.814 50 H 0.222 0.778 51 H 0.111 0.889 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.299 1.494 20.913 22.936 hybrid contribution -1.005 -0.620 -1.114 1.623 sum -10.304 0.874 19.799 22.337 Atomic orbital electron populations 1.21833 0.95098 1.01547 1.01293 1.21368 0.94580 0.97148 0.96069 1.21767 1.03130 0.93922 0.99836 1.21410 0.85016 0.96967 0.95286 1.44363 1.00514 1.69915 1.17755 1.18891 0.98518 1.36173 0.85067 0.89621 1.25268 0.97871 0.98559 0.95675 1.69832 1.43185 1.37777 1.04132 0.87034 0.82646 0.82591 0.76935 1.21625 1.23114 1.19501 1.20892 0.97368 0.94161 0.85214 1.22443 0.94418 1.02039 0.99499 1.21008 0.94080 0.96758 0.82275 0.89861 1.46368 1.65650 1.14451 1.10445 1.20113 0.78339 0.87244 0.84068 1.90738 1.49199 1.16005 1.84611 1.21647 1.01007 0.96264 0.95328 0.87600 1.21495 1.02377 0.97882 0.92522 1.20269 0.99451 0.89355 0.99394 1.21216 1.02470 0.97615 0.92530 1.21812 1.04846 0.91309 0.99268 1.70520 1.12944 1.23665 1.14361 1.24849 1.03958 0.88938 0.91867 1.45399 1.39088 1.14722 1.14696 1.21882 0.99753 0.96479 0.82764 0.93224 0.92391 0.92927 0.90510 0.92541 0.94826 0.95588 0.90401 0.92747 0.95774 0.91537 0.91338 0.92348 0.76866 0.90673 0.89245 0.89861 0.89024 0.81429 0.77806 0.88894 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.31 37.16 0.31 -1.52 16 2 C -0.09 -1.36 0.56 -154.39 -0.09 -1.45 16 3 C -0.13 -1.90 7.83 37.16 0.29 -1.61 16 4 C 0.14 2.81 2.88 -3.71 -0.01 2.80 16 5 N -0.60 -13.27 2.21 -172.31 -0.38 -13.65 16 6 C -0.26 -6.81 10.03 -15.06 -0.15 -6.96 16 7 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 8 C 0.03 0.70 5.23 -17.43 -0.09 0.61 16 9 N -0.91 -26.83 13.97 55.49 0.78 -26.05 16 10 Si 0.88 21.61 24.35 -169.99 -4.14 17.47 16 11 H -0.29 -6.80 6.62 56.52 0.37 -6.42 16 12 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 13 H -0.27 -6.59 6.64 56.52 0.38 -6.21 16 14 C 0.15 2.81 6.52 -3.71 -0.02 2.78 16 15 C -0.14 -2.20 5.31 -26.62 -0.14 -2.35 16 16 C 0.16 2.31 1.57 -67.89 -0.11 2.20 16 17 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 18 N -0.72 -7.63 4.19 -53.76 -0.23 -7.86 16 19 C 0.52 5.66 7.10 -10.99 -0.08 5.58 16 20 O -0.53 -7.92 15.47 5.55 0.09 -7.83 16 21 C -0.12 -0.93 2.52 -91.59 -0.23 -1.16 16 22 H 0.11 0.71 8.11 -51.93 -0.42 0.29 16 23 C -0.10 -0.83 4.69 -26.42 -0.12 -0.95 16 24 C -0.05 -0.31 6.31 -27.62 -0.17 -0.48 16 25 C -0.02 -0.21 6.57 -81.71 -0.54 -0.75 16 26 C -0.03 -0.25 11.83 -17.98 -0.21 -0.47 16 27 N -0.50 -5.75 11.27 -14.89 -0.17 -5.92 16 28 C 0.19 1.70 12.66 -90.71 -1.15 0.55 16 29 N -0.46 -3.85 3.13 -114.10 -0.36 -4.21 16 30 C 0.11 0.78 6.12 -3.93 -0.02 0.76 16 31 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.31 5.97 -51.93 -0.31 1.00 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 37 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 38 H 0.08 1.74 4.51 -51.93 -0.23 1.51 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 42 H 0.07 1.04 6.34 -51.93 -0.33 0.71 16 43 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 44 H 0.40 3.33 6.27 -40.82 -0.26 3.08 16 45 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 46 H 0.09 0.76 7.77 -51.93 -0.40 0.36 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 50 H 0.21 1.19 8.06 -52.49 -0.42 0.77 16 51 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 52 H 0.10 0.48 7.84 -51.93 -0.41 0.07 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -32.78 390.06 -9.59 -42.37 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -8.52 Total: 2.19 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -2.54 Total: -2.39 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.36 Total: -57.69 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.14 Total: 17.47 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.78 -9.59 -42.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940850721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.459 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds