Wall clock time and date at job start Wed Apr 1 2020 04:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.50182 * 2 1 4 4 C 1.53199 * 109.49816 * 239.90030 * 2 1 3 5 5 N 1.46924 * 108.77575 * 185.41482 * 4 2 1 6 6 C 1.36944 * 120.63001 * 233.58958 * 5 4 2 7 7 H 1.07998 * 119.99606 * 152.60042 * 6 5 4 8 8 C 1.38812 * 119.99895 * 332.59483 * 6 5 4 9 9 N 1.31622 * 119.99738 * 159.31395 * 8 6 5 10 10 Si 1.86804 * 120.00147 * 339.32077 * 8 6 5 11 11 H 1.48498 * 109.47237 * 92.94790 * 10 8 6 12 12 H 1.48502 * 109.47090 * 212.94607 * 10 8 6 13 13 H 1.48502 * 109.46879 * 332.94925 * 10 8 6 14 14 C 1.46928 * 118.73963 * 53.61107 * 5 4 2 15 15 C 1.53185 * 108.77268 * 306.39097 * 14 5 4 16 16 C 1.53039 * 109.31754 * 54.63656 * 15 14 5 17 17 H 1.08999 * 109.44995 * 58.64499 * 16 15 14 18 18 N 1.46502 * 109.46397 * 178.61243 * 16 15 14 19 19 C 1.34776 * 119.99931 * 275.06778 * 18 16 15 20 20 O 1.21286 * 119.99737 * 359.97438 * 19 18 16 21 21 C 1.50695 * 120.00015 * 179.97438 * 19 18 16 22 22 H 1.09007 * 109.43137 * 60.09690 * 21 19 18 23 23 C 1.53113 * 109.43141 * 179.97438 * 21 19 18 24 24 C 1.53494 * 109.30847 * 189.97897 * 23 21 19 25 25 C 1.50713 * 108.09842 * 311.26688 * 24 23 21 26 26 C 1.33776 * 128.75572 * 195.73276 * 25 24 23 27 27 N 1.34425 * 107.82791 * 179.97438 * 26 25 24 28 28 C 1.30796 * 109.32038 * 0.02562 * 27 26 25 29 29 N 1.34401 * 108.55131 * 0.05558 * 28 27 26 30 30 C 1.46471 * 128.44532 * 179.83096 * 29 28 27 31 31 H 1.08994 * 109.47042 * 299.93615 * 1 2 3 32 32 H 1.08999 * 109.47337 * 59.93514 * 1 2 3 33 33 H 1.09000 * 109.47573 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47585 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46933 * 300.06891 * 3 2 1 36 36 H 1.09005 * 109.47116 * 60.06290 * 3 2 1 37 37 H 1.09003 * 109.58824 * 305.20639 * 4 2 1 38 38 H 1.09005 * 109.58055 * 65.62926 * 4 2 1 39 39 H 0.96999 * 119.99510 * 179.97438 * 9 8 6 40 40 H 1.09003 * 109.58475 * 66.18065 * 14 5 4 41 41 H 1.08997 * 109.58283 * 186.46014 * 14 5 4 42 42 H 1.09000 * 109.50343 * 294.67812 * 15 14 5 43 43 H 1.09010 * 109.49724 * 174.58403 * 15 14 5 44 44 H 0.97001 * 119.99708 * 95.06531 * 18 16 15 45 45 H 1.09000 * 109.49823 * 70.02848 * 23 21 19 46 46 H 1.09006 * 109.50255 * 309.92761 * 23 21 19 47 47 H 1.09001 * 109.75021 * 70.93475 * 24 23 21 48 48 H 1.09000 * 109.74478 * 191.60388 * 24 23 21 49 49 H 1.08002 * 126.06899 * 359.96567 * 26 25 24 50 50 H 1.07994 * 125.72054 * 180.02562 * 28 27 26 51 51 H 1.09004 * 109.60119 * 77.59081 * 30 29 28 52 52 H 1.09001 * 109.60381 * 317.11750 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 3.5046 -0.8296 -1.1693 6 6 4.2936 -0.3800 -2.1944 7 1 5.3004 -0.0447 -1.9937 8 6 3.7993 -0.3554 -3.4913 9 7 4.3572 0.4238 -4.3935 10 14 2.3422 -1.4279 -3.9560 11 1 1.0857 -0.6532 -3.7941 12 1 2.4776 -1.8614 -5.3699 13 1 2.3049 -2.6217 -3.0736 14 6 4.1053 -1.4268 0.0312 15 6 3.5708 -0.6948 1.2661 16 6 2.0408 -0.7228 1.2486 17 1 1.6968 -1.7570 1.2357 18 7 1.5265 -0.0523 2.4453 19 6 1.3984 -0.7373 3.5990 20 8 1.7085 -1.9089 3.6462 21 6 0.8700 -0.0475 4.8301 22 1 -0.1352 0.3257 4.6334 23 6 0.8247 -1.0434 5.9922 24 6 0.0600 -0.4181 7.1671 25 6 0.6124 0.9643 7.4024 26 6 0.4628 1.7551 8.4709 27 7 1.1335 2.8961 8.2356 28 6 1.6921 2.8340 7.0545 29 7 1.3907 1.6470 6.5009 30 6 1.7867 1.1266 5.1903 31 1 -0.3633 0.5128 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1307 1.4417 -0.0005 35 1 1.6766 1.9566 -0.8894 36 1 1.6786 1.9559 0.8906 37 1 1.6052 -1.7221 -1.2976 38 1 1.7638 -0.1585 -2.1389 39 1 4.0120 0.4407 -5.2998 40 1 3.8375 -2.4819 0.0874 41 1 5.1897 -1.3270 -0.0146 42 1 3.9159 0.3391 1.2540 43 1 3.9334 -1.1892 2.1674 44 1 1.2782 0.8846 2.4074 45 1 1.8407 -1.2832 6.3057 46 1 0.3179 -1.9538 5.6717 47 1 -1.0006 -0.3544 6.9241 48 1 0.1970 -1.0264 8.0611 49 1 -0.0974 1.5188 9.3636 50 1 2.2940 3.6071 6.6003 51 1 2.8207 0.7837 5.2302 52 1 1.6881 1.9113 4.4402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940850721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:20 Heat of formation + Delta-G solvation = 23.421035 kcal Electronic energy + Delta-G solvation = -32010.877249 eV Core-core repulsion = 28010.764744 eV Total energy + Delta-G solvation = -4000.112506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.28738 -41.55744 -39.96192 -37.23438 -36.39805 -34.49103 -33.96303 -33.87574 -32.26324 -31.24923 -28.83585 -28.20983 -27.75075 -26.90971 -25.68260 -24.51501 -23.34531 -22.36192 -22.19715 -21.41218 -20.18940 -19.92831 -18.98666 -18.16884 -17.96277 -17.25589 -16.76608 -16.73422 -16.19221 -16.07848 -15.59367 -15.31200 -15.19430 -15.04413 -14.97493 -14.88761 -14.69933 -14.58055 -14.35022 -14.18148 -14.01132 -13.71710 -13.21973 -13.02660 -12.99381 -12.88751 -12.70796 -12.63310 -12.41024 -12.30364 -12.15259 -12.07362 -11.96076 -11.83486 -11.55937 -11.44315 -11.20489 -11.02938 -10.83911 -10.64056 -10.48708 -10.02693 -9.26643 -8.93464 -8.16090 -5.46959 1.13127 1.26424 1.40289 1.47315 1.47540 1.82993 2.11978 2.21915 2.40095 3.05520 3.28989 3.32031 3.50945 3.55294 3.62602 3.78236 3.88937 3.94380 3.96211 4.11555 4.17000 4.25127 4.29206 4.30260 4.38673 4.46933 4.48258 4.57697 4.64569 4.67248 4.76018 4.81786 4.83218 4.86134 4.94157 4.94842 5.01050 5.05141 5.07446 5.10702 5.18464 5.20026 5.32956 5.35810 5.43525 5.49599 5.64965 5.81803 5.87764 6.13529 6.29160 6.52982 6.91331 7.13677 7.20965 7.62304 8.02819 9.03697 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023062 B = 0.002561 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.839983 B =10931.869519 C =11203.530789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 C -0.125 4.125 4 C 0.133 3.867 5 N -0.613 5.613 6 C -0.239 4.239 7 H 0.055 0.945 8 C -0.030 4.030 9 N -0.954 5.954 10 Si 0.935 3.065 11 H -0.271 1.271 12 H -0.314 1.314 13 H -0.267 1.267 14 C 0.145 3.855 15 C -0.131 4.131 16 C 0.175 3.825 17 H 0.066 0.934 18 N -0.705 5.705 19 C 0.524 3.476 20 O -0.570 6.570 21 C -0.108 4.108 22 H 0.128 0.872 23 C -0.103 4.103 24 C -0.039 4.039 25 C -0.026 4.026 26 C -0.049 4.049 27 N -0.537 5.537 28 C 0.183 3.817 29 N -0.455 5.455 30 C 0.114 3.886 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.022 0.978 38 H 0.055 0.945 39 H 0.260 0.740 40 H 0.024 0.976 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.412 0.588 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.178 0.822 50 H 0.232 0.768 51 H 0.090 0.910 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.986 2.136 22.780 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 C -0.182 4.182 4 C 0.007 3.993 5 N -0.337 5.337 6 C -0.368 4.368 7 H 0.073 0.927 8 C -0.224 4.224 9 N -0.600 5.600 10 Si 0.765 3.235 11 H -0.198 1.198 12 H -0.244 1.244 13 H -0.192 1.192 14 C 0.020 3.980 15 C -0.170 4.170 16 C 0.070 3.930 17 H 0.084 0.916 18 N -0.357 5.357 19 C 0.310 3.690 20 O -0.448 6.448 21 C -0.130 4.130 22 H 0.146 0.854 23 C -0.141 4.141 24 C -0.077 4.077 25 C -0.141 4.141 26 C -0.195 4.195 27 N -0.256 5.256 28 C -0.099 4.099 29 N -0.138 5.138 30 C -0.008 4.008 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.250 0.750 45 H 0.078 0.922 46 H 0.102 0.898 47 H 0.117 0.883 48 H 0.120 0.880 49 H 0.196 0.804 50 H 0.248 0.752 51 H 0.108 0.892 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.635 1.979 23.061 25.906 hybrid contribution -0.196 -0.796 -1.674 1.864 sum -11.831 1.183 21.388 24.470 Atomic orbital electron populations 1.21819 0.92731 1.02037 1.02859 1.21195 0.96356 0.96795 0.93965 1.21714 1.01400 0.93723 1.01389 1.21447 0.83687 0.97011 0.97107 1.44434 1.01287 1.70349 1.17586 1.18814 0.97726 1.34098 0.86191 0.92703 1.25795 1.00867 0.99962 0.95818 1.69949 1.45633 1.40000 1.04459 0.86090 0.80716 0.81038 0.75661 1.19802 1.24352 1.19232 1.21017 0.97103 0.94467 0.85453 1.22256 0.95410 1.01730 0.97650 1.20593 0.93047 0.96094 0.83297 0.91599 1.46081 1.65299 1.15039 1.09259 1.20571 0.77171 0.86667 0.84571 1.90739 1.50833 1.18027 1.85213 1.21561 1.02020 0.96138 0.93279 0.85445 1.21451 1.01646 0.97914 0.93087 1.20301 0.99936 0.88128 0.99306 1.21510 1.02131 0.98160 0.92258 1.22122 1.05564 0.91481 1.00342 1.70485 1.14366 1.24867 1.15926 1.25393 1.03538 0.89597 0.91403 1.45483 1.38799 1.14498 1.15061 1.22002 0.99242 0.96872 0.82718 0.89891 0.92639 0.93038 0.93151 0.94046 0.90261 0.95992 0.92713 0.93054 0.95808 0.92322 0.90851 0.91541 0.74987 0.92185 0.89826 0.88255 0.87961 0.80449 0.75168 0.89181 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.31 71.98 0.60 -2.47 16 2 C -0.08 -2.27 0.56 -52.10 -0.03 -2.30 16 3 C -0.13 -3.35 7.83 71.98 0.56 -2.79 16 4 C 0.13 5.23 2.88 86.37 0.25 5.48 16 5 N -0.61 -27.07 2.21 -699.08 -1.54 -28.62 16 6 C -0.24 -12.92 10.03 84.03 0.84 -12.07 16 7 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 8 C -0.03 -1.67 5.23 84.86 0.44 -1.23 16 9 N -0.95 -58.38 13.97 21.65 0.30 -58.08 16 10 Si 0.94 45.52 24.35 68.60 1.67 47.19 16 11 H -0.27 -12.31 6.62 99.48 0.66 -11.65 16 12 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 13 H -0.27 -12.71 6.64 99.48 0.66 -12.05 16 14 C 0.15 5.39 6.52 86.36 0.56 5.96 16 15 C -0.13 -3.77 5.31 30.67 0.16 -3.61 16 16 C 0.17 4.51 1.57 45.02 0.07 4.58 16 17 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 18 N -0.70 -12.10 4.19 -442.40 -1.85 -13.95 16 19 C 0.52 9.63 7.10 87.66 0.62 10.26 16 20 O -0.57 -15.76 15.47 -3.05 -0.05 -15.81 16 21 C -0.11 -1.24 2.52 -11.42 -0.03 -1.27 16 22 H 0.13 1.02 8.11 -2.38 -0.02 1.00 16 23 C -0.10 -1.35 4.69 30.80 0.14 -1.20 16 24 C -0.04 -0.40 6.31 30.02 0.19 -0.21 16 25 C -0.03 -0.40 6.57 40.70 0.27 -0.13 16 26 C -0.05 -0.90 11.83 83.28 0.99 0.08 16 27 N -0.54 -11.65 11.27 -201.03 -2.27 -13.92 16 28 C 0.18 2.88 12.66 180.38 2.28 5.17 16 29 N -0.45 -6.27 3.13 -514.89 -1.61 -7.88 16 30 C 0.11 1.10 6.12 86.47 0.53 1.63 16 31 H 0.08 1.32 7.36 -2.39 -0.02 1.30 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.63 5.97 -2.39 -0.01 1.62 16 35 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.08 1.37 6.58 -2.38 -0.02 1.35 16 37 H 0.02 0.89 7.08 -2.39 -0.02 0.87 16 38 H 0.05 2.41 4.51 -2.38 -0.01 2.40 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 42 H 0.07 2.08 6.34 -2.39 -0.02 2.06 16 43 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.41 4.62 6.27 -92.71 -0.58 4.04 16 45 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 46 H 0.08 1.23 7.77 -2.38 -0.02 1.21 16 47 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 49 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 50 H 0.23 1.97 8.06 -2.91 -0.02 1.95 16 51 H 0.09 0.98 8.12 -2.38 -0.02 0.96 16 52 H 0.13 0.55 7.84 -2.39 -0.02 0.53 16 Total: -1.00 -74.66 390.06 3.35 -71.31 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.24 Total: 13.87 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 8.46 Total: 5.88 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -6.98 Total: -122.44 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.05 Total: -15.81 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.67 Total: 47.19 kcal Total: -74.66 3.35 -71.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940850721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.730 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds