Wall clock time and date at job start Wed Apr 1 2020 04:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.49299 * 2 1 4 4 C 1.53191 * 109.49776 * 239.90529 * 2 1 3 5 5 N 1.47199 * 108.85509 * 294.69900 * 4 2 1 6 6 C 1.36935 * 120.81754 * 126.33686 * 5 4 2 7 7 H 1.08007 * 119.99920 * 207.54133 * 6 5 4 8 8 C 1.38804 * 120.00238 * 27.53769 * 6 5 4 9 9 N 1.31624 * 120.00025 * 17.25587 * 8 6 5 10 10 Si 1.86801 * 120.00311 * 197.25673 * 8 6 5 11 11 H 1.48505 * 109.47002 * 90.00337 * 10 8 6 12 12 H 1.48506 * 109.47209 * 209.99842 * 10 8 6 13 13 H 1.48497 * 109.47373 * 330.00036 * 10 8 6 14 14 C 1.46928 * 118.55471 * 306.47593 * 5 4 2 15 15 C 1.53196 * 108.89290 * 53.54015 * 14 5 4 16 16 C 1.53036 * 109.50178 * 120.06360 * 2 1 3 17 17 H 1.09003 * 109.44814 * 178.60041 * 16 2 1 18 18 N 1.46499 * 109.45905 * 298.56781 * 16 2 1 19 19 C 1.34781 * 119.99858 * 205.06214 * 18 16 2 20 20 O 1.21285 * 119.99795 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00121 * 180.02562 * 19 18 16 22 22 H 1.09005 * 109.43179 * 300.00532 * 21 19 18 23 23 C 1.53113 * 109.43205 * 180.09983 * 21 19 18 24 24 C 1.53516 * 109.29416 * 169.96523 * 23 21 19 25 25 C 1.50714 * 108.02799 * 48.77082 * 24 23 21 26 26 C 1.33858 * 128.68166 * 164.16446 * 25 24 23 27 27 N 1.34424 * 107.80119 * 180.16121 * 26 25 24 28 28 C 1.30781 * 109.32042 * 0.02562 * 27 26 25 29 29 N 1.34407 * 108.55290 * 359.93206 * 28 27 26 30 30 C 1.46475 * 128.44829 * 180.16685 * 29 28 27 31 31 H 1.08998 * 109.47292 * 299.93165 * 1 2 3 32 32 H 1.08999 * 109.47371 * 59.93617 * 1 2 3 33 33 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47249 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47141 * 300.06372 * 3 2 1 36 36 H 1.09000 * 109.47182 * 60.06801 * 3 2 1 37 37 H 1.09006 * 109.58486 * 54.46541 * 4 2 1 38 38 H 1.08996 * 109.58559 * 174.88996 * 4 2 1 39 39 H 0.96996 * 120.00327 * 179.97438 * 9 8 6 40 40 H 1.09005 * 109.58754 * 293.68378 * 14 5 4 41 41 H 1.09002 * 109.59151 * 173.39841 * 14 5 4 42 42 H 1.09001 * 109.50023 * 65.24409 * 15 14 5 43 43 H 1.08999 * 109.50049 * 185.31311 * 15 14 5 44 44 H 0.96993 * 120.00287 * 25.07108 * 18 16 2 45 45 H 1.08996 * 109.49710 * 289.95672 * 23 21 19 46 46 H 1.08998 * 109.49747 * 50.06452 * 23 21 19 47 47 H 1.08996 * 109.78333 * 289.12669 * 24 23 21 48 48 H 1.08999 * 109.77390 * 168.41215 * 24 23 21 49 49 H 1.08005 * 126.09782 * 0.14863 * 26 25 24 50 50 H 1.08000 * 125.72944 * 179.97438 * 28 27 26 51 51 H 1.09001 * 109.60049 * 42.94568 * 30 29 28 52 52 H 1.09002 * 109.73335 * 282.55387 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0413 -0.7241 -1.2494 5 7 1.6514 -2.1413 -1.1709 6 6 0.9630 -2.7373 -2.1937 7 1 0.3106 -3.5736 -1.9903 8 6 1.1037 -2.2665 -3.4919 9 7 2.1238 -1.4961 -3.8056 10 14 -0.1547 -2.7261 -4.7937 11 1 -1.2423 -1.7150 -4.8096 12 1 0.5025 -2.7671 -6.1248 13 1 -0.7246 -4.0613 -4.4817 14 6 2.0141 -2.9039 0.0315 15 6 1.5031 -2.1554 1.2666 16 6 2.0409 -0.7227 1.2485 17 1 3.1306 -0.7439 1.2351 18 7 1.5811 -0.0137 2.4452 19 6 2.2706 -0.1206 3.5984 20 8 3.2719 -0.8035 3.6451 21 6 1.7974 0.6082 4.8296 22 1 1.7787 1.6800 4.6318 23 6 2.7536 0.3211 5.9906 24 6 2.4202 1.2524 7.1645 25 6 0.9330 1.1903 7.4014 26 6 0.2388 1.5946 8.4721 27 7 -1.0602 1.3384 8.2403 28 6 -1.1891 0.7883 7.0608 29 7 0.0296 0.6793 6.5044 30 6 0.3867 0.1308 5.1940 31 1 -0.3634 0.5128 0.8906 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1305 1.4419 -0.0005 35 1 1.6765 1.9566 -0.8894 36 1 1.6784 1.9560 0.8906 37 1 1.6006 -0.2736 -2.1388 38 1 3.1274 -0.6465 -1.2979 39 1 2.2223 -1.1674 -4.7129 40 1 3.0981 -3.0042 0.0875 41 1 1.5575 -3.8928 -0.0113 42 1 0.4133 -2.1351 1.2547 43 1 1.8477 -2.6625 2.1678 44 1 0.7806 0.5326 2.4078 45 1 2.6423 -0.7165 6.3053 46 1 3.7800 0.4960 5.6683 47 1 2.7116 2.2737 6.9195 48 1 2.9495 0.9228 8.0585 49 1 0.6493 2.0460 9.3633 50 1 -2.1187 0.4749 6.6092 51 1 -0.3224 0.4826 4.4447 52 1 0.3669 -0.9584 5.2332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940850722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:25 Heat of formation + Delta-G solvation = 36.986766 kcal Electronic energy + Delta-G solvation = -31899.646217 eV Core-core repulsion = 27900.121965 eV Total energy + Delta-G solvation = -3999.524251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.62239 -40.36095 -38.51390 -36.40659 -34.73799 -33.40682 -32.92084 -32.13014 -31.02910 -29.41879 -28.10103 -26.87210 -26.03153 -25.50321 -24.77901 -23.18164 -22.03941 -21.67090 -20.69516 -20.35077 -19.41837 -18.39785 -17.52837 -17.20132 -16.66351 -16.05683 -15.75992 -15.33700 -14.93877 -14.49679 -14.46359 -14.25226 -14.12525 -14.01059 -13.91670 -13.59457 -13.46944 -13.36907 -13.24453 -12.77681 -12.44537 -12.29011 -12.02821 -11.75478 -11.59844 -11.54662 -11.39509 -11.31793 -11.14145 -10.95657 -10.76742 -10.66066 -10.33234 -10.22843 -10.18152 -10.05038 -9.92986 -9.81412 -9.73456 -9.49949 -8.82579 -8.59518 -8.52496 -6.75146 -5.85710 -3.27394 1.78567 2.30834 2.59524 2.92014 3.12089 3.32561 3.40269 3.41052 3.94442 4.17091 4.26573 4.38879 4.43352 4.51355 4.74427 4.78419 4.85114 4.99097 5.07912 5.10795 5.18292 5.21831 5.32580 5.44047 5.46067 5.47606 5.49376 5.70864 5.75511 5.82296 5.83177 5.97130 5.98772 6.09000 6.10117 6.20518 6.30618 6.35333 6.37419 6.47682 6.52123 6.60828 6.73381 6.81601 6.88948 6.91691 6.94280 7.23102 7.47358 7.58041 7.73614 7.81504 8.16803 8.37302 9.13738 9.77007 10.33969 11.23131 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.002455 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.381761 B =11402.609550 C =11781.143610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C -0.134 4.134 4 C 0.185 3.815 5 N -0.589 5.589 6 C -0.250 4.250 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.162 3.838 17 H 0.082 0.918 18 N -0.718 5.718 19 C 0.517 3.483 20 O -0.530 6.530 21 C -0.121 4.121 22 H 0.106 0.894 23 C -0.105 4.105 24 C -0.047 4.047 25 C -0.023 4.023 26 C -0.026 4.026 27 N -0.497 5.497 28 C 0.185 3.815 29 N -0.454 5.454 30 C 0.114 3.886 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.094 0.906 38 H 0.020 0.980 39 H 0.254 0.746 40 H 0.019 0.981 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.395 0.605 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.168 0.832 50 H 0.205 0.795 51 H 0.097 0.903 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.341 7.765 18.609 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.099 4.099 3 C -0.192 4.192 4 C 0.058 3.942 5 N -0.311 5.311 6 C -0.380 4.380 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.546 5.546 10 Si 0.730 3.270 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.059 3.941 17 H 0.100 0.900 18 N -0.368 5.368 19 C 0.301 3.699 20 O -0.407 6.407 21 C -0.143 4.143 22 H 0.124 0.876 23 C -0.143 4.143 24 C -0.085 4.085 25 C -0.138 4.138 26 C -0.174 4.174 27 N -0.215 5.215 28 C -0.097 4.097 29 N -0.138 5.138 30 C -0.009 4.009 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.230 0.770 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.110 0.890 49 H 0.186 0.814 50 H 0.222 0.778 51 H 0.115 0.885 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.209 7.406 18.837 20.361 hybrid contribution -0.497 -0.065 -1.401 1.488 sum -2.705 7.341 17.436 19.111 Atomic orbital electron populations 1.21746 0.94711 1.02589 0.99352 1.21562 0.96298 0.94946 0.97110 1.21764 1.00830 0.95910 1.00682 1.20886 0.96389 0.83524 0.93373 1.44103 1.65249 1.05613 1.16153 1.19159 1.18158 1.14871 0.85808 0.91634 1.25015 0.97033 1.00517 0.96939 1.70018 1.27556 1.38261 1.18808 0.86319 0.81136 0.78250 0.81251 1.21472 1.21778 1.20459 1.20868 0.96687 0.94311 0.86169 1.22443 1.00995 0.95264 0.99521 1.21054 0.99364 0.91349 0.82312 0.89995 1.46421 1.29379 1.50455 1.10591 1.20103 0.84102 0.81611 0.84103 1.90735 1.25367 1.39944 1.84607 1.21667 0.94914 1.02271 0.95417 0.87621 1.21497 0.99798 1.00446 0.92543 1.20280 0.88028 1.00760 0.99409 1.21226 0.93366 1.06596 0.92581 1.21834 0.89332 1.06940 0.99250 1.70505 1.19336 1.17189 1.14462 1.24834 0.89170 1.03874 0.91864 1.45375 1.07632 1.45988 1.14796 1.21892 0.96196 1.00109 0.82683 0.95346 0.92841 0.91043 0.93022 0.92509 0.93953 0.88793 0.96201 0.93586 0.96261 0.92574 0.91844 0.92842 0.77034 0.90703 0.89228 0.89840 0.89038 0.81429 0.77847 0.88494 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 7.83 37.16 0.29 -1.65 16 2 C -0.10 -1.58 0.56 -154.39 -0.09 -1.66 16 3 C -0.13 -1.91 8.31 37.16 0.31 -1.60 16 4 C 0.18 4.03 4.01 -3.56 -0.01 4.02 16 5 N -0.59 -13.68 2.45 -172.09 -0.42 -14.10 16 6 C -0.25 -6.47 9.59 -15.06 -0.14 -6.62 16 7 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 8 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 9 N -0.90 -25.08 11.18 55.49 0.62 -24.46 16 10 Si 0.90 20.90 29.59 -169.99 -5.03 15.87 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.15 2.95 6.50 -3.71 -0.02 2.92 16 15 C -0.14 -2.34 5.31 -26.61 -0.14 -2.48 16 16 C 0.16 2.51 1.57 -67.89 -0.11 2.40 16 17 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 18 N -0.72 -8.35 4.19 -53.76 -0.23 -8.58 16 19 C 0.52 6.12 7.10 -10.98 -0.08 6.04 16 20 O -0.53 -8.47 15.47 5.55 0.09 -8.38 16 21 C -0.12 -1.01 2.52 -91.54 -0.23 -1.24 16 22 H 0.11 0.78 8.11 -51.93 -0.42 0.36 16 23 C -0.10 -0.89 4.69 -26.40 -0.12 -1.01 16 24 C -0.05 -0.33 6.31 -27.61 -0.17 -0.50 16 25 C -0.02 -0.22 6.57 -81.73 -0.54 -0.75 16 26 C -0.03 -0.27 11.84 -17.96 -0.21 -0.48 16 27 N -0.50 -5.89 11.27 -14.87 -0.17 -6.05 16 28 C 0.18 1.75 12.66 -90.72 -1.15 0.60 16 29 N -0.45 -4.03 3.13 -114.06 -0.36 -4.38 16 30 C 0.11 0.84 6.12 -3.89 -0.02 0.82 16 31 H 0.03 0.33 6.58 -51.93 -0.34 -0.01 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.24 5.97 -51.93 -0.31 0.93 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.50 7.36 -51.93 -0.38 0.12 16 37 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 42 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.39 3.70 6.29 -40.82 -0.26 3.45 16 45 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 46 H 0.09 0.82 7.77 -51.93 -0.40 0.41 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 50 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 51 H 0.10 0.53 7.85 -51.93 -0.41 0.13 16 52 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -31.51 396.52 -10.64 -42.16 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -8.59 Total: 3.16 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.53 Total: -1.20 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.55 Total: -57.57 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.51 -10.64 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940850722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.143 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds