Wall clock time and date at job start Wed Apr 1 2020 04:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.49299 * 2 1 4 4 C 1.53191 * 109.49776 * 239.90529 * 2 1 3 5 5 N 1.47199 * 108.85509 * 294.69900 * 4 2 1 6 6 C 1.36935 * 120.81754 * 126.33686 * 5 4 2 7 7 H 1.08007 * 119.99920 * 207.54133 * 6 5 4 8 8 C 1.38804 * 120.00238 * 27.53769 * 6 5 4 9 9 N 1.31624 * 120.00025 * 17.25587 * 8 6 5 10 10 Si 1.86801 * 120.00311 * 197.25673 * 8 6 5 11 11 H 1.48505 * 109.47002 * 90.00337 * 10 8 6 12 12 H 1.48506 * 109.47209 * 209.99842 * 10 8 6 13 13 H 1.48497 * 109.47373 * 330.00036 * 10 8 6 14 14 C 1.46928 * 118.55471 * 306.47593 * 5 4 2 15 15 C 1.53196 * 108.89290 * 53.54015 * 14 5 4 16 16 C 1.53036 * 109.50178 * 120.06360 * 2 1 3 17 17 H 1.09003 * 109.44814 * 178.60041 * 16 2 1 18 18 N 1.46499 * 109.45905 * 298.56781 * 16 2 1 19 19 C 1.34781 * 119.99858 * 205.06214 * 18 16 2 20 20 O 1.21285 * 119.99795 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00121 * 180.02562 * 19 18 16 22 22 H 1.09005 * 109.43179 * 300.00532 * 21 19 18 23 23 C 1.53113 * 109.43205 * 180.09983 * 21 19 18 24 24 C 1.53516 * 109.29416 * 169.96523 * 23 21 19 25 25 C 1.50714 * 108.02799 * 48.77082 * 24 23 21 26 26 C 1.33858 * 128.68166 * 164.16446 * 25 24 23 27 27 N 1.34424 * 107.80119 * 180.16121 * 26 25 24 28 28 C 1.30781 * 109.32042 * 0.02562 * 27 26 25 29 29 N 1.34407 * 108.55290 * 359.93206 * 28 27 26 30 30 C 1.46475 * 128.44829 * 180.16685 * 29 28 27 31 31 H 1.08998 * 109.47292 * 299.93165 * 1 2 3 32 32 H 1.08999 * 109.47371 * 59.93617 * 1 2 3 33 33 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47249 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47141 * 300.06372 * 3 2 1 36 36 H 1.09000 * 109.47182 * 60.06801 * 3 2 1 37 37 H 1.09006 * 109.58486 * 54.46541 * 4 2 1 38 38 H 1.08996 * 109.58559 * 174.88996 * 4 2 1 39 39 H 0.96996 * 120.00327 * 179.97438 * 9 8 6 40 40 H 1.09005 * 109.58754 * 293.68378 * 14 5 4 41 41 H 1.09002 * 109.59151 * 173.39841 * 14 5 4 42 42 H 1.09001 * 109.50023 * 65.24409 * 15 14 5 43 43 H 1.08999 * 109.50049 * 185.31311 * 15 14 5 44 44 H 0.96993 * 120.00287 * 25.07108 * 18 16 2 45 45 H 1.08996 * 109.49710 * 289.95672 * 23 21 19 46 46 H 1.08998 * 109.49747 * 50.06452 * 23 21 19 47 47 H 1.08996 * 109.78333 * 289.12669 * 24 23 21 48 48 H 1.08999 * 109.77390 * 168.41215 * 24 23 21 49 49 H 1.08005 * 126.09782 * 0.14863 * 26 25 24 50 50 H 1.08000 * 125.72944 * 179.97438 * 28 27 26 51 51 H 1.09001 * 109.60049 * 42.94568 * 30 29 28 52 52 H 1.09002 * 109.73335 * 282.55387 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0413 -0.7241 -1.2494 5 7 1.6514 -2.1413 -1.1709 6 6 0.9630 -2.7373 -2.1937 7 1 0.3106 -3.5736 -1.9903 8 6 1.1037 -2.2665 -3.4919 9 7 2.1238 -1.4961 -3.8056 10 14 -0.1547 -2.7261 -4.7937 11 1 -1.2423 -1.7150 -4.8096 12 1 0.5025 -2.7671 -6.1248 13 1 -0.7246 -4.0613 -4.4817 14 6 2.0141 -2.9039 0.0315 15 6 1.5031 -2.1554 1.2666 16 6 2.0409 -0.7227 1.2485 17 1 3.1306 -0.7439 1.2351 18 7 1.5811 -0.0137 2.4452 19 6 2.2706 -0.1206 3.5984 20 8 3.2719 -0.8035 3.6451 21 6 1.7974 0.6082 4.8296 22 1 1.7787 1.6800 4.6318 23 6 2.7536 0.3211 5.9906 24 6 2.4202 1.2524 7.1645 25 6 0.9330 1.1903 7.4014 26 6 0.2388 1.5946 8.4721 27 7 -1.0602 1.3384 8.2403 28 6 -1.1891 0.7883 7.0608 29 7 0.0296 0.6793 6.5044 30 6 0.3867 0.1308 5.1940 31 1 -0.3634 0.5128 0.8906 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1305 1.4419 -0.0005 35 1 1.6765 1.9566 -0.8894 36 1 1.6784 1.9560 0.8906 37 1 1.6006 -0.2736 -2.1388 38 1 3.1274 -0.6465 -1.2979 39 1 2.2223 -1.1674 -4.7129 40 1 3.0981 -3.0042 0.0875 41 1 1.5575 -3.8928 -0.0113 42 1 0.4133 -2.1351 1.2547 43 1 1.8477 -2.6625 2.1678 44 1 0.7806 0.5326 2.4078 45 1 2.6423 -0.7165 6.3053 46 1 3.7800 0.4960 5.6683 47 1 2.7116 2.2737 6.9195 48 1 2.9495 0.9228 8.0585 49 1 0.6493 2.0460 9.3633 50 1 -2.1187 0.4749 6.6092 51 1 -0.3224 0.4826 4.4447 52 1 0.3669 -0.9584 5.2332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940850722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:24 Heat of formation + Delta-G solvation = 19.825102 kcal Electronic energy + Delta-G solvation = -31900.390402 eV Core-core repulsion = 27900.121965 eV Total energy + Delta-G solvation = -4000.268437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.28590 -41.47640 -39.79925 -37.20960 -36.28060 -34.39656 -33.89732 -33.79836 -31.97116 -30.88996 -28.80689 -28.12763 -27.60389 -26.88925 -25.68476 -24.34939 -23.18195 -22.35551 -22.28908 -21.35850 -20.13331 -19.64961 -18.89847 -18.12780 -17.89113 -17.00297 -16.75037 -16.73495 -16.18328 -15.71284 -15.41210 -15.39386 -15.09042 -15.02394 -14.89456 -14.88547 -14.71094 -14.54959 -14.18609 -13.99893 -13.82133 -13.26274 -13.05637 -12.98009 -12.87336 -12.79556 -12.67004 -12.60711 -12.41806 -12.31914 -12.15472 -11.96107 -11.91817 -11.81637 -11.63832 -11.31860 -11.19602 -10.96453 -10.77237 -10.53370 -10.48438 -9.98813 -9.25790 -8.68033 -7.86361 -5.30572 1.13789 1.47359 1.48491 1.49015 1.57144 1.83608 2.14678 2.22528 2.51706 3.28530 3.29863 3.50612 3.56067 3.65625 3.74791 3.78627 3.96535 3.99273 4.10229 4.14643 4.17142 4.26056 4.36081 4.38493 4.45658 4.47945 4.59170 4.65024 4.67415 4.80916 4.83021 4.87559 4.94437 4.97549 4.99236 5.04948 5.07609 5.11787 5.18471 5.26159 5.32677 5.35982 5.44179 5.45078 5.55802 5.62110 5.72031 5.76437 5.82184 6.29732 6.39619 6.55549 7.14133 7.15717 7.23199 7.85714 8.38651 9.20312 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.002455 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.381761 B =11402.609550 C =11781.143610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.192 3.808 5 N -0.603 5.603 6 C -0.254 4.254 7 H 0.067 0.933 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.962 3.038 11 H -0.283 1.283 12 H -0.300 1.300 13 H -0.271 1.271 14 C 0.142 3.858 15 C -0.127 4.127 16 C 0.176 3.824 17 H 0.053 0.947 18 N -0.704 5.704 19 C 0.522 3.478 20 O -0.573 6.573 21 C -0.108 4.108 22 H 0.127 0.873 23 C -0.103 4.103 24 C -0.038 4.038 25 C -0.027 4.027 26 C -0.049 4.049 27 N -0.537 5.537 28 C 0.183 3.817 29 N -0.454 5.454 30 C 0.115 3.885 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.062 0.938 38 H -0.016 1.016 39 H 0.249 0.751 40 H 0.002 0.998 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.412 0.588 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.179 0.821 50 H 0.233 0.767 51 H 0.126 0.874 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.293 8.926 20.276 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.088 4.088 3 C -0.187 4.187 4 C 0.066 3.934 5 N -0.325 5.325 6 C -0.384 4.384 7 H 0.085 0.915 8 C -0.243 4.243 9 N -0.581 5.581 10 Si 0.791 3.209 11 H -0.210 1.210 12 H -0.227 1.227 13 H -0.195 1.195 14 C 0.016 3.984 15 C -0.167 4.167 16 C 0.071 3.929 17 H 0.071 0.929 18 N -0.356 5.356 19 C 0.308 3.692 20 O -0.452 6.452 21 C -0.130 4.130 22 H 0.145 0.855 23 C -0.141 4.141 24 C -0.076 4.076 25 C -0.141 4.141 26 C -0.195 4.195 27 N -0.256 5.256 28 C -0.099 4.099 29 N -0.138 5.138 30 C -0.008 4.008 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.002 0.998 39 H 0.058 0.942 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.250 0.750 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.196 0.804 50 H 0.249 0.751 51 H 0.144 0.856 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.188 8.580 20.542 22.652 hybrid contribution 0.193 -0.496 -1.885 1.959 sum -3.995 8.084 18.657 20.722 Atomic orbital electron populations 1.21673 0.93127 1.01885 1.01081 1.21311 0.97351 0.95550 0.94608 1.21729 1.00205 0.94482 1.02299 1.20682 0.94099 0.83490 0.95139 1.44322 1.65187 1.06512 1.16516 1.19455 1.17751 1.14606 0.86574 0.91537 1.25710 0.98642 1.01146 0.98817 1.70181 1.29332 1.39867 1.18764 0.85345 0.78920 0.78308 0.78351 1.20953 1.22661 1.19535 1.20968 0.95775 0.94825 0.86826 1.22233 1.01540 0.95429 0.97449 1.20572 0.97621 0.91142 0.83536 0.92891 1.46104 1.29935 1.50219 1.09307 1.20632 0.83136 0.80760 0.84680 1.90737 1.27343 1.41817 1.85258 1.21577 0.95418 1.02789 0.93177 0.85487 1.21455 0.99510 1.00018 0.93158 1.20302 0.86843 1.01247 0.99237 1.21502 0.94196 1.06046 0.92373 1.22145 0.89282 1.07788 1.00276 1.70476 1.20314 1.18766 1.16013 1.25403 0.90235 1.02917 0.91366 1.45452 1.07450 1.45757 1.15107 1.21996 0.95947 1.00080 0.82735 0.90665 0.94056 0.92930 0.94107 0.92843 0.90305 0.91937 0.99766 0.94202 0.98047 0.92566 0.90501 0.92176 0.75016 0.92158 0.90015 0.88280 0.87909 0.80411 0.75081 0.85637 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.38 7.83 71.98 0.56 -2.82 16 2 C -0.09 -2.72 0.56 -52.11 -0.03 -2.75 16 3 C -0.13 -3.46 8.31 71.98 0.60 -2.87 16 4 C 0.19 8.67 4.01 86.31 0.35 9.02 16 5 N -0.60 -28.68 2.45 -698.38 -1.71 -30.39 16 6 C -0.25 -13.32 9.59 84.03 0.81 -12.51 16 7 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 8 C -0.05 -2.58 4.92 84.86 0.42 -2.16 16 9 N -0.94 -53.93 11.18 21.65 0.24 -53.68 16 10 Si 0.96 43.51 29.59 68.60 2.03 45.54 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 C 0.14 5.82 6.50 86.36 0.56 6.38 16 15 C -0.13 -4.01 5.31 30.67 0.16 -3.85 16 16 C 0.18 5.21 1.57 45.02 0.07 5.28 16 17 H 0.05 1.92 7.58 -2.39 -0.02 1.91 16 18 N -0.70 -14.02 4.19 -442.39 -1.85 -15.87 16 19 C 0.52 10.94 7.10 87.66 0.62 11.56 16 20 O -0.57 -17.62 15.47 -3.05 -0.05 -17.67 16 21 C -0.11 -1.43 2.52 -11.39 -0.03 -1.46 16 22 H 0.13 1.25 8.11 -2.38 -0.02 1.23 16 23 C -0.10 -1.52 4.69 30.81 0.14 -1.37 16 24 C -0.04 -0.44 6.31 30.03 0.19 -0.25 16 25 C -0.03 -0.42 6.57 40.73 0.27 -0.16 16 26 C -0.05 -0.92 11.84 83.30 0.99 0.06 16 27 N -0.54 -11.82 11.27 -200.97 -2.26 -14.09 16 28 C 0.18 2.95 12.66 180.38 2.28 5.24 16 29 N -0.45 -6.59 3.13 -514.77 -1.61 -8.20 16 30 C 0.11 1.23 6.12 86.49 0.53 1.76 16 31 H 0.07 1.39 6.58 -2.39 -0.02 1.38 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.70 5.97 -2.39 -0.01 1.68 16 34 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.54 7.36 -2.39 -0.02 1.52 16 37 H 0.06 3.22 6.04 -2.38 -0.01 3.21 16 38 H -0.02 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 41 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 42 H 0.08 2.27 6.33 -2.39 -0.02 2.26 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.41 5.55 6.29 -92.71 -0.58 4.97 16 45 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 46 H 0.08 1.36 7.77 -2.39 -0.02 1.34 16 47 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 50 H 0.23 2.01 8.06 -2.91 -0.02 1.99 16 51 H 0.13 0.67 7.85 -2.39 -0.02 0.65 16 52 H 0.09 1.08 8.12 -2.39 -0.02 1.06 16 Total: -1.00 -72.37 396.52 3.61 -68.76 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.33 Total: 16.48 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 8.49 Total: 9.12 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -7.20 Total: -122.23 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.37 3.61 -68.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940850722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.587 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds