Wall clock time and date at job start Wed Apr 1 2020 04:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.49711 * 2 1 4 4 C 1.53186 * 109.49622 * 120.06883 * 2 1 3 5 5 N 1.46924 * 108.77973 * 65.31482 * 4 2 1 6 6 C 1.36940 * 120.62988 * 233.58347 * 5 4 2 7 7 H 1.08001 * 120.00070 * 152.60081 * 6 5 4 8 8 C 1.38815 * 120.00237 * 332.60938 * 6 5 4 9 9 N 1.31610 * 120.00352 * 159.29228 * 8 6 5 10 10 Si 1.86806 * 119.99696 * 339.29056 * 8 6 5 11 11 H 1.48501 * 109.46946 * 92.96346 * 10 8 6 12 12 H 1.48496 * 109.46962 * 212.96816 * 10 8 6 13 13 H 1.48503 * 109.47163 * 332.96580 * 10 8 6 14 14 C 1.46927 * 118.74019 * 53.60862 * 5 4 2 15 15 C 1.53192 * 108.88891 * 306.32330 * 14 5 4 16 16 C 1.53042 * 109.49449 * 239.90264 * 2 1 3 17 17 H 1.08997 * 109.45957 * 181.40934 * 16 2 1 18 18 N 1.46504 * 109.46255 * 61.43783 * 16 2 1 19 19 C 1.34769 * 120.00160 * 154.99717 * 18 16 2 20 20 O 1.21278 * 120.00226 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99739 * 179.97438 * 19 18 16 22 22 H 1.08997 * 109.43916 * 300.00243 * 21 19 18 23 23 C 1.53121 * 109.43324 * 180.09891 * 21 19 18 24 24 C 1.53507 * 109.29885 * 169.96952 * 23 21 19 25 25 C 1.50713 * 108.02882 * 48.76709 * 24 23 21 26 26 C 1.33863 * 128.68003 * 164.16576 * 25 24 23 27 27 N 1.34424 * 107.79877 * 180.16516 * 26 25 24 28 28 C 1.30783 * 109.31978 * 0.02562 * 27 26 25 29 29 N 1.34403 * 108.55517 * 359.92929 * 28 27 26 30 30 C 1.46471 * 128.44839 * 180.17346 * 29 28 27 31 31 H 1.09003 * 109.47034 * 299.93311 * 1 2 3 32 32 H 1.09004 * 109.47334 * 59.93608 * 1 2 3 33 33 H 1.09002 * 109.47243 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46745 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47240 * 300.06384 * 3 2 1 36 36 H 1.08993 * 109.47413 * 60.06787 * 3 2 1 37 37 H 1.09004 * 109.58839 * 305.51879 * 4 2 1 38 38 H 1.09007 * 109.58713 * 185.10534 * 4 2 1 39 39 H 0.97002 * 120.00154 * 179.97438 * 9 8 6 40 40 H 1.08999 * 109.58852 * 66.17774 * 14 5 4 41 41 H 1.08999 * 109.58619 * 186.46653 * 14 5 4 42 42 H 1.08999 * 109.49716 * 174.66074 * 15 14 5 43 43 H 1.09005 * 109.49704 * 294.74882 * 15 14 5 44 44 H 0.96998 * 119.99652 * 334.99569 * 18 16 2 45 45 H 1.09001 * 109.49251 * 289.96393 * 23 21 19 46 46 H 1.08999 * 109.49983 * 50.06156 * 23 21 19 47 47 H 1.08999 * 109.78611 * 289.12681 * 24 23 21 48 48 H 1.09003 * 109.77769 * 168.40916 * 24 23 21 49 49 H 1.08004 * 126.09721 * 0.14715 * 26 25 24 50 50 H 1.08001 * 125.71854 * 179.97438 * 28 27 26 51 51 H 1.09001 * 109.60645 * 42.94520 * 30 29 28 52 52 H 1.09002 * 109.59783 * 282.47428 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0412 -0.7235 1.2497 5 7 1.6515 -2.1379 1.1701 6 6 0.9639 -2.7309 2.1952 7 1 0.3114 -3.5678 1.9948 8 6 1.1054 -2.2561 3.4920 9 7 0.1842 -2.5209 4.3939 10 14 2.6034 -1.2415 3.9568 11 1 2.2935 0.2017 3.7943 12 1 2.9662 -1.5138 5.3708 13 1 3.7412 -1.6058 3.0748 14 6 2.0139 -2.9041 -0.0300 15 6 1.5025 -2.1593 -1.2672 16 6 2.0407 -0.7235 -1.2482 17 1 3.1304 -0.7451 -1.2350 18 7 1.5810 -0.0151 -2.4454 19 6 2.2697 -0.1238 -3.5987 20 8 3.2697 -0.8083 -3.6457 21 6 1.7965 0.6045 -4.8303 22 1 0.7934 0.2656 -5.0891 23 6 2.7488 0.3114 -5.9929 24 6 2.1362 0.8419 -7.2966 25 6 1.6808 2.2582 -7.0556 26 6 1.3608 3.1984 -7.9531 27 7 1.0156 4.3092 -7.2794 28 6 1.1131 4.0839 -5.9948 29 7 1.5235 2.8171 -5.8126 30 6 1.7709 2.1122 -4.5528 31 1 -0.3633 0.5128 0.8906 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1307 1.4417 -0.0005 35 1 1.6766 1.9566 -0.8894 36 1 1.6786 1.9559 0.8905 37 1 1.6008 -0.2725 2.1390 38 1 3.1275 -0.6460 1.2982 39 1 0.2833 -2.1894 5.3001 40 1 3.0978 -3.0044 -0.0860 41 1 1.5573 -3.8928 0.0160 42 1 1.8474 -2.6688 -2.1669 43 1 0.4127 -2.1391 -1.2551 44 1 0.7810 0.5321 -2.4078 45 1 3.7048 0.8031 -5.8128 46 1 2.9023 -0.7646 -6.0751 47 1 1.2842 0.2247 -7.5818 48 1 2.8844 0.8255 -8.0892 49 1 1.3774 3.0847 -9.0271 50 1 0.8989 4.7962 -5.2118 51 1 0.9746 2.3393 -3.8441 52 1 2.7303 2.4253 -4.1409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940850723.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:29 Heat of formation + Delta-G solvation = 42.998421 kcal Electronic energy + Delta-G solvation = -32012.907895 eV Core-core repulsion = 28013.644329 eV Total energy + Delta-G solvation = -3999.263566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.67052 -40.50727 -38.76624 -36.49424 -34.94233 -33.47352 -33.09408 -32.18885 -31.19065 -30.01040 -28.17522 -27.04440 -26.35520 -25.56952 -24.81005 -23.27576 -22.36238 -21.72556 -20.65152 -20.49990 -19.50832 -18.68797 -17.73507 -17.30962 -16.76567 -16.15600 -15.84630 -15.46718 -15.11679 -14.59678 -14.52289 -14.43224 -14.31844 -14.25542 -13.90511 -13.80483 -13.69979 -13.47061 -13.32533 -12.86581 -12.56206 -12.39800 -12.15718 -12.05520 -11.87915 -11.81652 -11.60290 -11.37910 -11.33654 -11.20829 -10.86279 -10.78294 -10.54175 -10.29055 -10.26754 -10.04766 -9.97225 -9.86378 -9.73495 -9.51512 -8.95185 -8.68605 -8.63702 -7.05094 -6.01502 -3.37460 1.74009 2.24069 2.50868 2.87863 3.00799 3.24573 3.43646 3.45783 3.87533 4.10705 4.19352 4.34049 4.46117 4.46386 4.66496 4.72361 4.75775 4.82247 4.88161 4.93894 5.04114 5.12873 5.15251 5.17074 5.34628 5.39797 5.43340 5.58132 5.61533 5.65770 5.72577 5.76707 5.79402 5.90195 5.97943 6.04289 6.10623 6.15714 6.21429 6.30237 6.35098 6.43496 6.48653 6.54843 6.59280 6.61972 6.72861 6.87068 6.91537 7.38705 7.77354 7.88762 8.05698 8.26231 8.86811 9.65169 10.02237 11.14331 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023113 B = 0.002591 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.169594 B =10805.944898 C =11359.079806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.139 4.139 4 C 0.140 3.860 5 N -0.603 5.603 6 C -0.258 4.258 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.906 5.906 10 Si 0.877 3.123 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.150 3.850 15 C -0.144 4.144 16 C 0.162 3.838 17 H 0.083 0.917 18 N -0.718 5.718 19 C 0.518 3.482 20 O -0.530 6.530 21 C -0.121 4.121 22 H 0.107 0.893 23 C -0.105 4.105 24 C -0.047 4.047 25 C -0.024 4.024 26 C -0.026 4.026 27 N -0.496 5.496 28 C 0.185 3.815 29 N -0.455 5.455 30 C 0.114 3.886 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.026 0.974 39 H 0.263 0.737 40 H 0.024 0.976 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.396 0.604 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.091 0.909 49 H 0.169 0.831 50 H 0.205 0.795 51 H 0.097 0.903 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 9.944 -20.610 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 C -0.197 4.197 4 C 0.013 3.987 5 N -0.325 5.325 6 C -0.386 4.386 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.549 5.549 10 Si 0.708 3.292 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.023 3.977 15 C -0.184 4.184 16 C 0.059 3.941 17 H 0.101 0.899 18 N -0.369 5.369 19 C 0.302 3.698 20 O -0.405 6.405 21 C -0.143 4.143 22 H 0.125 0.875 23 C -0.143 4.143 24 C -0.085 4.085 25 C -0.138 4.138 26 C -0.173 4.173 27 N -0.214 5.214 28 C -0.097 4.097 29 N -0.139 5.139 30 C -0.009 4.009 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.231 0.769 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.102 0.898 48 H 0.110 0.890 49 H 0.186 0.814 50 H 0.222 0.778 51 H 0.115 0.885 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.330 10.113 -20.646 23.108 hybrid contribution 0.578 0.264 0.962 1.153 sum 2.908 10.376 -19.685 22.441 Atomic orbital electron populations 1.21770 0.93774 1.03306 0.99834 1.21365 0.97029 0.94692 0.96086 1.21831 1.00853 0.95794 1.01245 1.21405 0.96736 0.85258 0.95262 1.44357 1.65791 1.04624 1.17765 1.18892 1.18809 1.15871 0.85069 0.89623 1.25266 0.97684 0.98749 0.95673 1.69826 1.32746 1.48196 1.04152 0.87035 0.85880 0.79361 0.76939 1.21629 1.23115 1.19504 1.20895 0.96878 0.94664 0.85225 1.22499 1.01495 0.94949 0.99480 1.21069 0.99332 0.91484 0.82232 0.89868 1.46366 1.29616 1.50523 1.10402 1.20105 0.83823 0.81848 0.83985 1.90735 1.25259 1.40278 1.84277 1.21671 1.03140 0.93738 0.95726 0.87475 1.21499 0.97846 1.03443 0.91492 1.20280 1.01038 0.88912 0.98256 1.21227 1.09870 0.97985 0.84694 1.21842 1.06571 0.89462 0.99409 1.70509 1.20887 1.27305 1.02739 1.24833 1.03697 0.85386 0.95824 1.45367 1.50161 1.11731 1.06596 1.21895 1.03767 0.90924 0.84295 0.92545 0.94797 0.90510 0.92916 0.93316 0.92356 0.90404 0.95603 0.92744 0.95765 0.91556 0.92268 0.91343 0.76870 0.90734 0.89189 0.89784 0.89011 0.81402 0.77848 0.88482 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 7.83 37.16 0.29 -1.63 16 2 C -0.09 -1.35 0.56 -154.39 -0.09 -1.44 16 3 C -0.14 -1.76 8.31 37.15 0.31 -1.45 16 4 C 0.14 2.81 2.88 -3.71 -0.01 2.80 16 5 N -0.60 -13.30 2.21 -172.32 -0.38 -13.68 16 6 C -0.26 -6.82 10.03 -15.06 -0.15 -6.97 16 7 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 8 C 0.03 0.70 5.23 -17.43 -0.09 0.61 16 9 N -0.91 -26.84 13.97 55.49 0.78 -26.07 16 10 Si 0.88 21.59 24.35 -169.99 -4.14 17.45 16 11 H -0.29 -6.78 6.62 56.52 0.37 -6.41 16 12 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 13 H -0.27 -6.58 6.64 56.52 0.38 -6.21 16 14 C 0.15 2.82 6.51 -3.71 -0.02 2.79 16 15 C -0.14 -2.24 5.34 -26.45 -0.14 -2.38 16 16 C 0.16 2.31 1.57 -67.73 -0.11 2.21 16 17 H 0.08 1.36 7.58 -51.93 -0.39 0.96 16 18 N -0.72 -7.64 4.20 -53.61 -0.22 -7.86 16 19 C 0.52 5.66 7.10 -10.99 -0.08 5.58 16 20 O -0.53 -7.91 15.48 5.56 0.09 -7.83 16 21 C -0.12 -0.93 2.52 -91.54 -0.23 -1.16 16 22 H 0.11 0.73 8.11 -51.93 -0.42 0.31 16 23 C -0.10 -0.82 4.69 -26.41 -0.12 -0.95 16 24 C -0.05 -0.31 6.31 -27.61 -0.17 -0.48 16 25 C -0.02 -0.21 6.57 -81.73 -0.54 -0.74 16 26 C -0.03 -0.26 11.84 -17.95 -0.21 -0.47 16 27 N -0.50 -5.69 11.27 -14.87 -0.17 -5.86 16 28 C 0.18 1.66 12.66 -90.72 -1.15 0.51 16 29 N -0.45 -3.78 3.13 -114.06 -0.36 -4.14 16 30 C 0.11 0.76 6.12 -3.89 -0.02 0.73 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.38 6.58 -51.93 -0.34 0.04 16 33 H 0.08 1.33 5.97 -51.93 -0.31 1.02 16 34 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.05 0.48 7.37 -51.93 -0.38 0.10 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.74 4.51 -51.93 -0.23 1.50 16 38 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 44 H 0.40 3.34 6.29 -40.82 -0.26 3.08 16 45 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 46 H 0.09 0.77 7.77 -51.93 -0.40 0.36 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.17 1.31 8.06 -52.48 -0.42 0.88 16 50 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 51 H 0.10 0.46 7.85 -51.93 -0.41 0.05 16 52 H 0.09 0.63 8.12 -51.93 -0.42 0.21 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -32.83 390.13 -9.59 -42.42 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.52 Total: 2.12 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.54 Total: -2.43 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.36 Total: -57.61 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.45 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.83 -9.59 -42.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940850723.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.418 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds