Wall clock time and date at job start Wed Apr 1 2020 04:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.49442 * 2 1 4 4 C 1.53193 * 109.50156 * 239.90495 * 2 1 3 5 5 N 1.46921 * 108.77477 * 294.68032 * 4 2 1 6 6 C 1.36932 * 120.63449 * 126.38743 * 5 4 2 7 7 H 1.08001 * 120.00567 * 207.68938 * 6 5 4 8 8 C 1.38816 * 119.99918 * 27.68482 * 6 5 4 9 9 N 1.31623 * 119.99748 * 17.35457 * 8 6 5 10 10 Si 1.86801 * 120.00255 * 197.36032 * 8 6 5 11 11 H 1.48499 * 109.47108 * 59.99538 * 10 8 6 12 12 H 1.48501 * 109.47078 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46872 * 299.99914 * 10 8 6 14 14 C 1.46938 * 118.76297 * 306.41304 * 5 4 2 15 15 C 1.53189 * 108.77456 * 53.55243 * 14 5 4 16 16 C 1.53037 * 109.33791 * 305.41669 * 15 14 5 17 17 H 1.08994 * 109.45815 * 301.32280 * 16 15 14 18 18 N 1.46506 * 109.45643 * 181.36782 * 16 15 14 19 19 C 1.34772 * 119.99788 * 85.00079 * 18 16 15 20 20 O 1.21279 * 120.00447 * 359.97438 * 19 18 16 21 21 C 1.50704 * 119.99895 * 179.97438 * 19 18 16 22 22 H 1.09004 * 109.51125 * 299.90789 * 21 19 18 23 23 C 1.53151 * 109.51274 * 179.76205 * 21 19 18 24 24 C 1.53257 * 109.50184 * 170.59404 * 23 21 19 25 25 N 1.46468 * 108.79577 * 50.36656 * 24 23 21 26 26 C 1.36316 * 127.77481 * 162.85604 * 25 24 23 27 27 C 1.34847 * 106.68879 * 180.10599 * 26 25 24 28 28 N 1.34286 * 108.07397 * 359.97438 * 27 26 25 29 29 C 1.30088 * 109.21189 * 359.96665 * 28 27 26 30 30 C 1.51046 * 127.39173 * 180.09145 * 29 28 27 31 31 H 1.09001 * 109.47391 * 299.93180 * 1 2 3 32 32 H 1.08996 * 109.47493 * 59.93961 * 1 2 3 33 33 H 1.09007 * 109.46324 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.46810 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.46738 * 300.06305 * 3 2 1 36 36 H 1.08998 * 109.47197 * 60.06421 * 3 2 1 37 37 H 1.08999 * 109.58535 * 54.46977 * 4 2 1 38 38 H 1.09002 * 109.58755 * 174.89381 * 4 2 1 39 39 H 0.96998 * 119.99441 * 180.02562 * 9 8 6 40 40 H 1.08997 * 109.56093 * 293.78048 * 14 5 4 41 41 H 1.09009 * 109.61544 * 173.35538 * 14 5 4 42 42 H 1.08999 * 109.49928 * 185.44060 * 15 14 5 43 43 H 1.09008 * 109.49628 * 65.38290 * 15 14 5 44 44 H 0.97000 * 119.99832 * 264.99773 * 18 16 15 45 45 H 1.09000 * 109.46656 * 290.60016 * 23 21 19 46 46 H 1.09002 * 109.46285 * 50.57699 * 23 21 19 47 47 H 1.09006 * 109.56469 * 290.57603 * 24 23 21 48 48 H 1.08998 * 109.70309 * 170.23424 * 24 23 21 49 49 H 1.08001 * 126.65157 * 0.10003 * 26 25 24 50 50 H 1.08004 * 125.95652 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.71404 * 44.35798 * 30 29 28 52 52 H 1.08999 * 109.71812 * 283.72223 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4424 0.0000 4 6 2.0414 -0.7241 -1.2494 5 7 1.6517 -2.1384 -1.1690 6 6 0.9637 -2.7319 -2.1934 7 1 0.3078 -3.5659 -1.9917 8 6 1.1093 -2.2617 -3.4914 9 7 2.1340 -1.4966 -3.8031 10 14 -0.1492 -2.7144 -4.7955 11 1 -1.4881 -2.2219 -4.3835 12 1 0.2318 -2.0912 -6.0885 13 1 -0.1912 -4.1906 -4.9514 14 6 2.0135 -2.9043 0.0316 15 6 1.5032 -2.1553 1.2666 16 6 2.0409 -0.7227 1.2485 17 1 3.1305 -0.7439 1.2355 18 7 1.5811 -0.0137 2.4453 19 6 2.2705 -0.1205 3.5984 20 8 3.2714 -0.8040 3.6455 21 6 1.7979 0.6092 4.8293 22 1 1.7810 1.6813 4.6330 23 6 2.7483 0.3164 5.9941 24 6 2.4095 1.2341 7.1739 25 7 0.9711 1.1519 7.4378 26 6 0.3055 1.5357 8.5638 27 6 -0.9993 1.2690 8.3521 28 7 -1.1221 0.7363 7.1255 29 6 0.0524 0.6636 6.5709 30 6 0.3866 0.1334 5.1966 31 1 -0.3634 0.5128 0.8906 32 1 -0.3634 0.5147 -0.8894 33 1 -0.3632 -1.0278 -0.0005 34 1 3.1305 1.4419 -0.0005 35 1 1.6765 1.9566 -0.8894 36 1 1.6784 1.9560 0.8905 37 1 1.6008 -0.2736 -2.1388 38 1 3.1275 -0.6465 -1.2978 39 1 2.2354 -1.1677 -4.7099 40 1 3.0974 -3.0051 0.0874 41 1 1.5545 -3.8921 -0.0123 42 1 1.8482 -2.6622 2.1679 43 1 0.4134 -2.1351 1.2553 44 1 0.7804 0.5327 2.4077 45 1 2.6383 -0.7240 6.2999 46 1 3.7760 0.4953 5.6780 47 1 2.6775 2.2612 6.9262 48 1 2.9619 0.9153 8.0578 49 1 0.7391 1.9690 9.4529 50 1 -1.8050 1.4520 9.0477 51 1 -0.3309 0.5156 4.4706 52 1 0.3565 -0.9562 5.2055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940851554.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:08 Heat of formation + Delta-G solvation = 18.887126 kcal Electronic energy + Delta-G solvation = -31856.834963 eV Core-core repulsion = 27856.525852 eV Total energy + Delta-G solvation = -4000.309111 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.25947 -41.43661 -39.77335 -37.16582 -36.24422 -34.58715 -34.02254 -33.73352 -31.23226 -30.76518 -29.57185 -28.11522 -27.58833 -26.89413 -25.61976 -24.42760 -23.24188 -22.33888 -22.27145 -21.20627 -20.02732 -19.64276 -18.85600 -18.03844 -17.80352 -17.06737 -16.79544 -16.70797 -16.21292 -15.75258 -15.47984 -15.35857 -15.14022 -15.01561 -14.87287 -14.73680 -14.67039 -14.61734 -14.20063 -13.85829 -13.67964 -13.25239 -13.03122 -12.92468 -12.87437 -12.83201 -12.66610 -12.57958 -12.44075 -12.31519 -12.22704 -12.15049 -11.93074 -11.80275 -11.61250 -11.29769 -11.15390 -10.93805 -10.76091 -10.51297 -10.50829 -9.93981 -9.27028 -8.66180 -7.85218 -5.29378 1.13323 1.48585 1.49951 1.56741 1.61302 1.88946 2.16163 2.18921 2.52858 3.21500 3.29955 3.52978 3.54290 3.62794 3.67478 3.77087 4.00507 4.05973 4.13340 4.14563 4.17605 4.28139 4.37887 4.47195 4.50226 4.58930 4.60502 4.65157 4.69029 4.70380 4.84046 4.87857 4.89341 4.92258 4.99855 5.00535 5.05889 5.11144 5.13469 5.28050 5.34314 5.37774 5.38342 5.46682 5.59992 5.62931 5.72890 5.77722 5.88130 6.24824 6.41094 6.60864 7.17335 7.17707 7.28303 7.87434 8.39908 9.21146 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.002432 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.239655 B =11509.547120 C =11866.449354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 C -0.129 4.129 4 C 0.194 3.806 5 N -0.603 5.603 6 C -0.257 4.257 7 H 0.065 0.935 8 C -0.047 4.047 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.276 1.276 12 H -0.296 1.296 13 H -0.279 1.279 14 C 0.144 3.856 15 C -0.128 4.128 16 C 0.177 3.823 17 H 0.055 0.945 18 N -0.706 5.706 19 C 0.521 3.479 20 O -0.576 6.576 21 C -0.098 4.098 22 H 0.127 0.873 23 C -0.113 4.113 24 C 0.105 3.895 25 N -0.456 5.456 26 C -0.042 4.042 27 C -0.063 4.063 28 N -0.528 5.528 29 C 0.192 3.808 30 C -0.019 4.019 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.062 0.938 38 H -0.014 1.014 39 H 0.249 0.751 40 H 0.004 0.996 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.411 0.589 45 H 0.066 0.934 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.210 0.790 50 H 0.183 0.817 51 H 0.109 0.891 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 11.217 24.488 26.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.067 3.933 5 N -0.325 5.325 6 C -0.387 4.387 7 H 0.083 0.917 8 C -0.242 4.242 9 N -0.580 5.580 10 Si 0.791 3.209 11 H -0.202 1.202 12 H -0.222 1.222 13 H -0.205 1.205 14 C 0.017 3.983 15 C -0.168 4.168 16 C 0.072 3.928 17 H 0.074 0.926 18 N -0.357 5.357 19 C 0.308 3.692 20 O -0.455 6.455 21 C -0.120 4.120 22 H 0.145 0.855 23 C -0.151 4.151 24 C -0.015 4.015 25 N -0.139 5.139 26 C -0.175 4.175 27 C -0.210 4.210 28 N -0.248 5.248 29 C -0.071 4.071 30 C -0.059 4.059 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.004 0.996 39 H 0.058 0.942 40 H 0.022 0.978 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.249 0.751 45 H 0.085 0.915 46 H 0.122 0.878 47 H 0.127 0.873 48 H 0.134 0.866 49 H 0.227 0.773 50 H 0.200 0.800 51 H 0.128 0.872 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.262 10.545 23.985 26.232 hybrid contribution 0.089 -0.117 -0.876 0.888 sum -1.173 10.429 23.109 25.381 Atomic orbital electron populations 1.21674 0.93412 1.01761 1.00971 1.21324 0.97135 0.95699 0.94720 1.21721 1.00270 0.94377 1.02269 1.20628 0.94154 0.83455 0.95033 1.44255 1.65171 1.06569 1.16525 1.19413 1.17731 1.14932 0.86596 0.91714 1.25710 0.98609 1.01125 0.98793 1.70178 1.29058 1.39922 1.18862 0.85424 0.79436 0.77800 0.78288 1.20228 1.22229 1.20498 1.20963 0.95825 0.94719 0.86744 1.22243 1.01379 0.95680 0.97511 1.20563 0.97641 0.91021 0.83590 0.92634 1.46113 1.29962 1.50196 1.09417 1.20748 0.82902 0.80817 0.84751 1.90713 1.27433 1.42100 1.85299 1.21387 0.95423 1.02583 0.92604 0.85505 1.21683 1.00770 1.00158 0.92516 1.22250 0.76441 1.02607 1.00247 1.45667 1.09161 1.45826 1.13250 1.23124 0.93272 1.07883 0.93270 1.22791 0.96930 1.06209 0.95087 1.69992 1.24103 1.20888 1.09833 1.23237 0.84450 1.03616 0.95749 1.20084 0.95371 1.01233 0.89175 0.90964 0.93960 0.93127 0.93894 0.92823 0.90402 0.91932 0.99603 0.94163 0.97820 0.92622 0.92251 0.90911 0.75144 0.91470 0.87831 0.87255 0.86554 0.77328 0.80033 0.87228 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.73 7.83 71.98 0.56 -3.17 16 2 C -0.09 -2.90 0.56 -52.10 -0.03 -2.93 16 3 C -0.13 -3.62 8.31 71.99 0.60 -3.02 16 4 C 0.19 9.00 3.99 86.36 0.34 9.34 16 5 N -0.60 -29.59 2.43 -699.07 -1.70 -31.29 16 6 C -0.26 -13.83 9.58 84.04 0.81 -13.03 16 7 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 8 C -0.05 -2.58 4.91 84.86 0.42 -2.17 16 9 N -0.93 -54.60 11.19 21.65 0.24 -54.36 16 10 Si 0.96 44.40 29.59 68.60 2.03 46.43 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 C 0.14 6.11 6.52 86.36 0.56 6.68 16 15 C -0.13 -4.39 5.31 30.67 0.16 -4.22 16 16 C 0.18 5.60 1.57 45.02 0.07 5.67 16 17 H 0.06 2.09 7.57 -2.39 -0.02 2.07 16 18 N -0.71 -16.06 4.19 -442.41 -1.86 -17.92 16 19 C 0.52 11.90 7.10 87.66 0.62 12.53 16 20 O -0.58 -18.15 15.49 -3.03 -0.05 -18.20 16 21 C -0.10 -1.45 2.55 -11.35 -0.03 -1.48 16 22 H 0.13 1.34 8.12 -2.39 -0.02 1.32 16 23 C -0.11 -1.49 4.67 30.73 0.14 -1.35 16 24 C 0.11 0.89 6.98 86.47 0.60 1.49 16 25 N -0.46 -6.70 3.13 -513.84 -1.61 -8.32 16 26 C -0.04 -0.56 11.64 83.22 0.97 0.40 16 27 C -0.06 -1.18 11.87 83.54 0.99 -0.19 16 28 N -0.53 -12.89 11.24 -187.52 -2.11 -15.00 16 29 C 0.19 3.83 7.65 138.24 1.06 4.88 16 30 C -0.02 -0.32 5.46 30.09 0.16 -0.16 16 31 H 0.07 1.61 6.58 -2.39 -0.02 1.59 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.79 5.97 -2.38 -0.01 1.77 16 34 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.65 7.36 -2.39 -0.02 1.63 16 37 H 0.06 3.29 6.04 -2.39 -0.01 3.28 16 38 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 40 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.06 2.32 7.93 -2.38 -0.02 2.30 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 2.40 6.34 -2.38 -0.02 2.38 16 44 H 0.41 7.15 6.37 -92.71 -0.59 6.56 16 45 H 0.07 1.11 8.12 -2.39 -0.02 1.09 16 46 H 0.10 1.38 7.79 -2.39 -0.02 1.36 16 47 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 48 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.21 1.11 8.06 -2.91 -0.02 1.08 16 50 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 51 H 0.11 1.58 7.94 -2.39 -0.02 1.56 16 52 H 0.08 1.60 8.11 -2.39 -0.02 1.58 16 Total: -1.00 -73.77 396.77 3.29 -70.48 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.32 Total: 18.89 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 8.02 Total: 9.28 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -7.03 Total: -126.88 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.05 Total: -18.20 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -73.77 3.29 -70.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940851554.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.368 kcal (2) G-P(sol) polarization free energy of solvation -73.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds