Wall clock time and date at job start Wed Apr 1 2020 04:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.49550 * 2 1 4 4 C 1.53194 * 109.49528 * 239.94176 * 2 1 3 5 5 N 1.46934 * 108.77032 * 185.44549 * 4 2 1 6 6 C 1.36943 * 120.60203 * 233.57118 * 5 4 2 7 7 H 1.08001 * 119.99687 * 152.56644 * 6 5 4 8 8 C 1.38807 * 120.00044 * 332.57095 * 6 5 4 9 9 N 1.31627 * 119.99916 * 159.32167 * 8 6 5 10 10 Si 1.86791 * 120.00193 * 339.31891 * 8 6 5 11 11 H 1.48508 * 109.47112 * 92.95295 * 10 8 6 12 12 H 1.48503 * 109.47508 * 212.94916 * 10 8 6 13 13 H 1.48506 * 109.47314 * 332.95497 * 10 8 6 14 14 C 1.46923 * 118.76948 * 53.55431 * 5 4 2 15 15 C 1.53198 * 108.77016 * 306.41210 * 14 5 4 16 16 C 1.53033 * 109.31366 * 54.63580 * 15 14 5 17 17 H 1.09006 * 109.46153 * 58.65163 * 16 15 14 18 18 N 1.46505 * 109.44915 * 178.62076 * 16 15 14 19 19 C 1.34781 * 119.99615 * 275.05921 * 18 16 15 20 20 O 1.21277 * 120.00002 * 0.02562 * 19 18 16 21 21 C 1.50701 * 119.99523 * 179.97438 * 19 18 16 22 22 H 1.08993 * 109.51125 * 300.09370 * 21 19 18 23 23 C 1.53157 * 109.50651 * 179.97438 * 21 19 18 24 24 C 1.53258 * 109.50031 * 170.59062 * 23 21 19 25 25 N 1.46469 * 108.80107 * 50.34419 * 24 23 21 26 26 C 1.36322 * 127.77590 * 162.91588 * 25 24 23 27 27 C 1.34850 * 106.68766 * 180.02562 * 26 25 24 28 28 N 1.34298 * 108.07559 * 359.97438 * 27 26 25 29 29 C 1.30089 * 109.20419 * 359.97438 * 28 27 26 30 30 C 1.51049 * 127.38048 * 180.12873 * 29 28 27 31 31 H 1.08997 * 109.47314 * 59.99567 * 1 2 3 32 32 H 1.08999 * 109.46692 * 299.99392 * 1 2 3 33 33 H 1.08997 * 109.46724 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47170 * 60.00607 * 3 2 1 35 35 H 1.09002 * 109.47017 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47595 * 300.00276 * 3 2 1 37 37 H 1.09004 * 109.58725 * 305.19832 * 4 2 1 38 38 H 1.08996 * 109.59056 * 65.62093 * 4 2 1 39 39 H 0.97001 * 120.00217 * 179.97438 * 9 8 6 40 40 H 1.08998 * 109.58592 * 186.62546 * 14 5 4 41 41 H 1.08994 * 109.70259 * 66.26724 * 14 5 4 42 42 H 1.08992 * 109.49575 * 294.67661 * 15 14 5 43 43 H 1.09005 * 109.51758 * 174.60093 * 15 14 5 44 44 H 0.97000 * 120.00247 * 95.05953 * 18 16 15 45 45 H 1.08997 * 109.46957 * 290.60249 * 23 21 19 46 46 H 1.09001 * 109.46420 * 50.58268 * 23 21 19 47 47 H 1.08999 * 109.58231 * 170.14162 * 24 23 21 48 48 H 1.09000 * 109.58146 * 290.41254 * 24 23 21 49 49 H 1.07998 * 126.65269 * 0.03919 * 26 25 24 50 50 H 1.08001 * 125.96204 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.71581 * 44.24886 * 30 29 28 52 52 H 1.08995 * 109.71542 * 283.59737 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0412 -0.7233 -1.2499 5 7 3.5045 -0.8293 -1.1695 6 6 4.2935 -0.3793 -2.1944 7 1 5.3002 -0.0439 -1.9936 8 6 3.7992 -0.3543 -3.4912 9 7 4.3571 0.4252 -4.3933 10 14 2.3423 -1.4268 -3.9564 11 1 1.0856 -0.6522 -3.7942 12 1 2.4777 -1.8598 -5.3704 13 1 2.3050 -2.6209 -3.0743 14 6 4.1054 -1.4266 0.0309 15 6 3.5709 -0.6946 1.2660 16 6 2.0409 -0.7228 1.2484 17 1 1.6969 -1.7570 1.2356 18 7 1.5269 -0.0521 2.4453 19 6 1.3990 -0.7371 3.5990 20 8 1.7098 -1.9084 3.6464 21 6 0.8708 -0.0471 4.8302 22 1 1.5239 0.7863 5.0889 23 6 0.8248 -1.0418 5.9939 24 6 0.5147 -0.2933 7.2948 25 7 -0.6605 0.5548 7.0829 26 6 -1.4572 1.1292 8.0282 27 6 -2.4100 1.8164 7.3661 28 7 -2.1955 1.6626 6.0493 29 6 -1.1498 0.9097 5.8711 30 6 -0.5441 0.4776 4.5565 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 0.5137 0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6776 1.9562 0.8900 35 1 3.1306 1.4418 -0.0005 36 1 1.6775 1.9564 -0.8899 37 1 1.6052 -1.7212 -1.2987 38 1 1.7637 -0.1572 -2.1390 39 1 4.0120 0.4425 -5.2996 40 1 5.1896 -1.3245 -0.0138 41 1 3.8398 -2.4822 0.0883 42 1 3.9160 0.3392 1.2538 43 1 3.9336 -1.1886 2.1674 44 1 1.2787 0.8848 2.4074 45 1 0.0479 -1.7833 5.8075 46 1 1.7895 -1.5412 6.0832 47 1 0.3090 -1.0109 8.0890 48 1 1.3684 0.3248 7.5730 49 1 -1.3466 1.0495 9.0995 50 1 -3.2066 2.3902 7.8162 51 1 -0.4965 1.3281 3.8764 52 1 -1.1498 -0.3137 4.1151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940851556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:17 Heat of formation + Delta-G solvation = 43.184062 kcal Electronic energy + Delta-G solvation = -31966.306448 eV Core-core repulsion = 27967.050931 eV Total energy + Delta-G solvation = -3999.255516 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.63096 -40.41568 -38.69091 -36.45062 -34.84539 -33.75564 -32.98808 -32.05349 -30.25695 -30.15804 -28.88679 -26.94313 -26.27748 -25.49376 -24.76965 -23.35658 -22.34141 -21.71323 -20.57612 -20.29298 -19.40701 -18.60580 -17.44174 -17.42568 -16.63972 -16.26916 -15.80800 -15.50858 -15.08638 -14.58059 -14.47883 -14.38849 -14.30271 -14.12148 -13.92690 -13.75981 -13.61472 -13.37331 -13.03839 -12.77430 -12.52328 -12.33226 -12.20239 -12.04838 -11.78384 -11.72629 -11.64105 -11.54923 -11.26070 -11.13850 -10.79254 -10.70530 -10.46321 -10.24130 -10.20175 -9.98068 -9.89750 -9.89203 -9.66356 -9.45722 -8.84905 -8.64675 -8.63266 -6.99590 -5.96947 -3.32652 1.73932 2.42512 2.51294 2.87021 3.07338 3.29906 3.47901 3.50496 3.87329 4.08320 4.18022 4.20608 4.51018 4.61520 4.67553 4.71839 4.76585 4.88519 4.91450 5.03053 5.13873 5.21536 5.23642 5.25023 5.27947 5.40660 5.43220 5.52764 5.65568 5.67207 5.71146 5.82402 5.91237 5.98708 5.99238 6.07196 6.19495 6.25882 6.29028 6.38634 6.45428 6.47490 6.56078 6.60819 6.67288 6.70942 6.79382 6.83637 6.99112 7.51255 7.82708 7.93786 8.17649 8.30806 8.91726 9.70057 10.07432 11.18928 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023533 B = 0.002566 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.539209 B =10909.845996 C =11448.768589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.140 3.860 5 N -0.603 5.603 6 C -0.257 4.257 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.907 5.907 10 Si 0.878 3.122 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.150 3.850 15 C -0.144 4.144 16 C 0.163 3.837 17 H 0.083 0.917 18 N -0.716 5.716 19 C 0.519 3.481 20 O -0.537 6.537 21 C -0.113 4.113 22 H 0.104 0.896 23 C -0.115 4.115 24 C 0.103 3.897 25 N -0.456 5.456 26 C -0.056 4.056 27 C -0.032 4.032 28 N -0.487 5.487 29 C 0.211 3.789 30 C -0.024 4.024 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.024 0.976 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.398 0.602 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.087 0.913 49 H 0.174 0.826 50 H 0.170 0.830 51 H 0.101 0.899 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 1.199 24.704 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.187 4.187 4 C 0.013 3.987 5 N -0.326 5.326 6 C -0.385 4.385 7 H 0.103 0.897 8 C -0.174 4.174 9 N -0.550 5.550 10 Si 0.708 3.292 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.195 1.195 14 C 0.024 3.976 15 C -0.184 4.184 16 C 0.059 3.941 17 H 0.101 0.899 18 N -0.367 5.367 19 C 0.304 3.696 20 O -0.414 6.414 21 C -0.136 4.136 22 H 0.122 0.878 23 C -0.153 4.153 24 C -0.019 4.019 25 N -0.140 5.140 26 C -0.189 4.189 27 C -0.180 4.180 28 N -0.206 5.206 29 C -0.052 4.052 30 C -0.063 4.063 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.233 0.767 45 H 0.101 0.899 46 H 0.121 0.879 47 H 0.112 0.888 48 H 0.106 0.894 49 H 0.191 0.809 50 H 0.187 0.813 51 H 0.119 0.881 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.554 0.648 23.960 25.803 hybrid contribution -0.555 -0.362 0.435 0.793 sum -10.109 0.285 24.396 26.409 Atomic orbital electron populations 1.21840 0.95013 1.01539 1.01434 1.21361 0.94652 0.97138 0.96006 1.21770 1.03063 0.93950 0.99931 1.21410 0.84956 0.96954 0.95341 1.44361 1.00556 1.69904 1.17758 1.18890 0.98507 1.36065 0.85081 0.89666 1.25265 0.97880 0.98595 0.95678 1.69835 1.43226 1.37832 1.04128 0.87028 0.82696 0.82600 0.76856 1.21573 1.23176 1.19507 1.20888 0.97309 0.94151 0.85258 1.22444 0.94543 1.02035 0.99399 1.20985 0.94013 0.96714 0.82374 0.89920 1.46320 1.65494 1.14587 1.10304 1.20166 0.78144 0.87057 0.84215 1.90718 1.50063 1.16042 1.84587 1.21456 0.97549 0.99803 0.94750 0.87835 1.21720 1.05286 0.97375 0.90919 1.22062 0.86388 0.93689 0.99792 1.45455 1.23459 1.38174 1.06866 1.22580 0.96470 1.04180 0.95666 1.22386 1.01522 1.04786 0.89279 1.70074 1.14862 1.17377 1.18263 1.23111 0.94524 0.99776 0.87793 1.20120 0.93096 1.02312 0.90779 0.92422 0.92997 0.92962 0.94648 0.90599 0.92582 0.95617 0.90426 0.92783 0.91625 0.95795 0.91350 0.92370 0.76670 0.89886 0.87929 0.88752 0.89449 0.80851 0.81303 0.88088 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.31 37.16 0.31 -1.62 16 2 C -0.09 -1.42 0.56 -154.39 -0.09 -1.51 16 3 C -0.13 -2.02 7.83 37.16 0.29 -1.73 16 4 C 0.14 2.89 2.88 -3.71 -0.01 2.88 16 5 N -0.60 -13.59 2.21 -172.31 -0.38 -13.97 16 6 C -0.26 -6.90 10.03 -15.06 -0.15 -7.05 16 7 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 8 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 9 N -0.91 -27.20 13.97 55.49 0.78 -26.43 16 10 Si 0.88 21.97 24.35 -169.99 -4.14 17.84 16 11 H -0.29 -6.92 6.62 56.52 0.37 -6.54 16 12 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 13 H -0.27 -6.69 6.64 56.52 0.38 -6.32 16 14 C 0.15 2.89 6.52 -3.71 -0.02 2.86 16 15 C -0.14 -2.30 5.31 -26.61 -0.14 -2.45 16 16 C 0.16 2.43 1.57 -67.89 -0.11 2.32 16 17 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 18 N -0.72 -8.25 4.20 -53.76 -0.23 -8.48 16 19 C 0.52 5.97 7.10 -10.98 -0.08 5.89 16 20 O -0.54 -8.16 15.49 5.56 0.09 -8.07 16 21 C -0.11 -0.92 2.54 -91.50 -0.23 -1.15 16 22 H 0.10 0.71 8.12 -51.93 -0.42 0.29 16 23 C -0.12 -0.83 4.67 -26.52 -0.12 -0.96 16 24 C 0.10 0.58 6.98 -3.93 -0.03 0.56 16 25 N -0.46 -3.86 3.13 -113.76 -0.36 -4.22 16 26 C -0.06 -0.45 11.64 -16.76 -0.20 -0.64 16 27 C -0.03 -0.31 11.87 -17.67 -0.21 -0.52 16 28 N -0.49 -6.01 11.24 -10.62 -0.12 -6.13 16 29 C 0.21 2.20 7.65 -155.25 -1.19 1.01 16 30 C -0.02 -0.21 5.47 -27.52 -0.15 -0.36 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.59 7.36 -51.93 -0.38 0.21 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.43 6.58 -51.93 -0.34 0.09 16 35 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.55 7.07 -51.93 -0.37 0.18 16 38 H 0.08 1.78 4.51 -51.93 -0.23 1.55 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.40 3.82 6.38 -40.82 -0.26 3.56 16 45 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 46 H 0.10 0.75 7.79 -51.93 -0.40 0.35 16 47 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 50 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 51 H 0.10 0.78 7.95 -51.93 -0.41 0.37 16 52 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -33.49 390.39 -9.22 -42.71 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.53 Total: 2.74 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.22 Total: -1.86 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.31 Total: -59.23 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.49 -9.22 -42.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940851556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.892 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds