Wall clock time and date at job start Wed Apr 1 2020 04:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.49550 * 2 1 4 4 C 1.53194 * 109.49528 * 239.94176 * 2 1 3 5 5 N 1.46934 * 108.77032 * 185.44549 * 4 2 1 6 6 C 1.36943 * 120.60203 * 233.57118 * 5 4 2 7 7 H 1.08001 * 119.99687 * 152.56644 * 6 5 4 8 8 C 1.38807 * 120.00044 * 332.57095 * 6 5 4 9 9 N 1.31627 * 119.99916 * 159.32167 * 8 6 5 10 10 Si 1.86791 * 120.00193 * 339.31891 * 8 6 5 11 11 H 1.48508 * 109.47112 * 92.95295 * 10 8 6 12 12 H 1.48503 * 109.47508 * 212.94916 * 10 8 6 13 13 H 1.48506 * 109.47314 * 332.95497 * 10 8 6 14 14 C 1.46923 * 118.76948 * 53.55431 * 5 4 2 15 15 C 1.53198 * 108.77016 * 306.41210 * 14 5 4 16 16 C 1.53033 * 109.31366 * 54.63580 * 15 14 5 17 17 H 1.09006 * 109.46153 * 58.65163 * 16 15 14 18 18 N 1.46505 * 109.44915 * 178.62076 * 16 15 14 19 19 C 1.34781 * 119.99615 * 275.05921 * 18 16 15 20 20 O 1.21277 * 120.00002 * 0.02562 * 19 18 16 21 21 C 1.50701 * 119.99523 * 179.97438 * 19 18 16 22 22 H 1.08993 * 109.51125 * 300.09370 * 21 19 18 23 23 C 1.53157 * 109.50651 * 179.97438 * 21 19 18 24 24 C 1.53258 * 109.50031 * 170.59062 * 23 21 19 25 25 N 1.46469 * 108.80107 * 50.34419 * 24 23 21 26 26 C 1.36322 * 127.77590 * 162.91588 * 25 24 23 27 27 C 1.34850 * 106.68766 * 180.02562 * 26 25 24 28 28 N 1.34298 * 108.07559 * 359.97438 * 27 26 25 29 29 C 1.30089 * 109.20419 * 359.97438 * 28 27 26 30 30 C 1.51049 * 127.38048 * 180.12873 * 29 28 27 31 31 H 1.08997 * 109.47314 * 59.99567 * 1 2 3 32 32 H 1.08999 * 109.46692 * 299.99392 * 1 2 3 33 33 H 1.08997 * 109.46724 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47170 * 60.00607 * 3 2 1 35 35 H 1.09002 * 109.47017 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47595 * 300.00276 * 3 2 1 37 37 H 1.09004 * 109.58725 * 305.19832 * 4 2 1 38 38 H 1.08996 * 109.59056 * 65.62093 * 4 2 1 39 39 H 0.97001 * 120.00217 * 179.97438 * 9 8 6 40 40 H 1.08998 * 109.58592 * 186.62546 * 14 5 4 41 41 H 1.08994 * 109.70259 * 66.26724 * 14 5 4 42 42 H 1.08992 * 109.49575 * 294.67661 * 15 14 5 43 43 H 1.09005 * 109.51758 * 174.60093 * 15 14 5 44 44 H 0.97000 * 120.00247 * 95.05953 * 18 16 15 45 45 H 1.08997 * 109.46957 * 290.60249 * 23 21 19 46 46 H 1.09001 * 109.46420 * 50.58268 * 23 21 19 47 47 H 1.08999 * 109.58231 * 170.14162 * 24 23 21 48 48 H 1.09000 * 109.58146 * 290.41254 * 24 23 21 49 49 H 1.07998 * 126.65269 * 0.03919 * 26 25 24 50 50 H 1.08001 * 125.96204 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.71581 * 44.24886 * 30 29 28 52 52 H 1.08995 * 109.71542 * 283.59737 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0412 -0.7233 -1.2499 5 7 3.5045 -0.8293 -1.1695 6 6 4.2935 -0.3793 -2.1944 7 1 5.3002 -0.0439 -1.9936 8 6 3.7992 -0.3543 -3.4912 9 7 4.3571 0.4252 -4.3933 10 14 2.3423 -1.4268 -3.9564 11 1 1.0856 -0.6522 -3.7942 12 1 2.4777 -1.8598 -5.3704 13 1 2.3050 -2.6209 -3.0743 14 6 4.1054 -1.4266 0.0309 15 6 3.5709 -0.6946 1.2660 16 6 2.0409 -0.7228 1.2484 17 1 1.6969 -1.7570 1.2356 18 7 1.5269 -0.0521 2.4453 19 6 1.3990 -0.7371 3.5990 20 8 1.7098 -1.9084 3.6464 21 6 0.8708 -0.0471 4.8302 22 1 1.5239 0.7863 5.0889 23 6 0.8248 -1.0418 5.9939 24 6 0.5147 -0.2933 7.2948 25 7 -0.6605 0.5548 7.0829 26 6 -1.4572 1.1292 8.0282 27 6 -2.4100 1.8164 7.3661 28 7 -2.1955 1.6626 6.0493 29 6 -1.1498 0.9097 5.8711 30 6 -0.5441 0.4776 4.5565 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 0.5137 0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6776 1.9562 0.8900 35 1 3.1306 1.4418 -0.0005 36 1 1.6775 1.9564 -0.8899 37 1 1.6052 -1.7212 -1.2987 38 1 1.7637 -0.1572 -2.1390 39 1 4.0120 0.4425 -5.2996 40 1 5.1896 -1.3245 -0.0138 41 1 3.8398 -2.4822 0.0883 42 1 3.9160 0.3392 1.2538 43 1 3.9336 -1.1886 2.1674 44 1 1.2787 0.8848 2.4074 45 1 0.0479 -1.7833 5.8075 46 1 1.7895 -1.5412 6.0832 47 1 0.3090 -1.0109 8.0890 48 1 1.3684 0.3248 7.5730 49 1 -1.3466 1.0495 9.0995 50 1 -3.2066 2.3902 7.8162 51 1 -0.4965 1.3281 3.8764 52 1 -1.1498 -0.3137 4.1151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940851556.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:15 Heat of formation + Delta-G solvation = 22.170482 kcal Electronic energy + Delta-G solvation = -31967.217665 eV Core-core repulsion = 27967.050931 eV Total energy + Delta-G solvation = -4000.166734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.26193 -41.51691 -39.92596 -37.18986 -36.35284 -34.61792 -34.11801 -33.87606 -31.80021 -30.77334 -29.62135 -28.20227 -27.73156 -26.91391 -25.64002 -24.55599 -23.42993 -22.35147 -22.17860 -21.25258 -20.11619 -19.88942 -18.94334 -18.07787 -17.88569 -17.28540 -16.90578 -16.57709 -16.29911 -16.07090 -15.62184 -15.30701 -15.22485 -15.13829 -14.86231 -14.78743 -14.70672 -14.60441 -14.32660 -14.17600 -13.79968 -13.66635 -13.20211 -13.01114 -12.95036 -12.84999 -12.79832 -12.61018 -12.39804 -12.28993 -12.22895 -12.15464 -12.05616 -11.81635 -11.54324 -11.42419 -11.17324 -10.95561 -10.87724 -10.61869 -10.51529 -9.97632 -9.27632 -8.92190 -8.15145 -5.45906 1.12955 1.27933 1.40803 1.48427 1.60541 1.88483 2.13092 2.18209 2.41247 3.06264 3.20967 3.33764 3.52683 3.54073 3.62491 3.64653 3.90667 3.96074 4.04986 4.13104 4.17398 4.27580 4.30661 4.32066 4.47717 4.51961 4.58577 4.59443 4.63749 4.68900 4.69908 4.78943 4.84416 4.87296 4.88148 4.92197 4.96704 5.02399 5.06828 5.10632 5.12592 5.22081 5.34574 5.37359 5.37728 5.54395 5.65407 5.87450 5.88725 6.14427 6.24642 6.58366 6.92306 7.17009 7.26191 7.63358 8.04109 9.04637 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023533 B = 0.002566 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.539209 B =10909.845996 C =11448.768589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 C -0.125 4.125 4 C 0.134 3.866 5 N -0.613 5.613 6 C -0.238 4.238 7 H 0.055 0.945 8 C -0.030 4.030 9 N -0.954 5.954 10 Si 0.935 3.065 11 H -0.273 1.273 12 H -0.314 1.314 13 H -0.267 1.267 14 C 0.146 3.854 15 C -0.131 4.131 16 C 0.175 3.825 17 H 0.067 0.933 18 N -0.706 5.706 19 C 0.523 3.477 20 O -0.573 6.573 21 C -0.100 4.100 22 H 0.125 0.875 23 C -0.113 4.113 24 C 0.104 3.896 25 N -0.456 5.456 26 C -0.043 4.043 27 C -0.063 4.063 28 N -0.528 5.528 29 C 0.192 3.808 30 C -0.020 4.020 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.040 0.960 37 H 0.023 0.977 38 H 0.054 0.946 39 H 0.260 0.740 40 H 0.059 0.941 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.411 0.589 45 H 0.068 0.932 46 H 0.104 0.896 47 H 0.116 0.884 48 H 0.108 0.892 49 H 0.209 0.791 50 H 0.182 0.818 51 H 0.110 0.890 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.890 1.359 28.185 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 C -0.182 4.182 4 C 0.008 3.992 5 N -0.337 5.337 6 C -0.368 4.368 7 H 0.073 0.927 8 C -0.225 4.225 9 N -0.601 5.601 10 Si 0.765 3.235 11 H -0.199 1.199 12 H -0.243 1.243 13 H -0.192 1.192 14 C 0.020 3.980 15 C -0.171 4.171 16 C 0.070 3.930 17 H 0.085 0.915 18 N -0.358 5.358 19 C 0.310 3.690 20 O -0.452 6.452 21 C -0.121 4.121 22 H 0.143 0.857 23 C -0.151 4.151 24 C -0.016 4.016 25 N -0.139 5.139 26 C -0.176 4.176 27 C -0.210 4.210 28 N -0.248 5.248 29 C -0.070 4.070 30 C -0.059 4.059 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.249 0.751 45 H 0.087 0.913 46 H 0.122 0.878 47 H 0.134 0.866 48 H 0.126 0.874 49 H 0.226 0.774 50 H 0.199 0.801 51 H 0.129 0.871 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.990 0.810 27.499 29.625 hybrid contribution -0.058 -0.433 -0.531 0.688 sum -11.048 0.377 26.968 29.146 Atomic orbital electron populations 1.21826 0.92786 1.02053 1.02848 1.21194 0.96325 0.96712 0.94106 1.21712 1.01353 0.93882 1.01285 1.21440 0.83714 0.97008 0.97009 1.44438 1.01279 1.70342 1.17636 1.18815 0.97721 1.34060 0.86188 0.92699 1.25792 1.00875 0.99985 0.95826 1.69951 1.45649 1.40004 1.04462 0.86086 0.80683 0.81056 0.75670 1.19919 1.24289 1.19155 1.21017 0.97104 0.94512 0.85354 1.22262 0.95422 1.01615 0.97775 1.20590 0.93076 0.96063 0.83308 0.91507 1.46089 1.65280 1.15097 1.09334 1.20683 0.77058 0.86535 0.84699 1.90715 1.51549 1.17796 1.85132 1.21384 0.97435 1.00220 0.93091 0.85704 1.21684 1.04878 0.97042 0.91470 1.22248 0.86094 0.93996 0.99304 1.45661 1.23922 1.37962 1.06389 1.23117 0.95111 1.02365 0.97030 1.22786 1.03034 1.06263 0.88938 1.69998 1.16189 1.18753 1.19862 1.23278 0.94736 1.00179 0.88854 1.20100 0.92919 1.02378 0.90487 0.92653 0.89989 0.92956 0.90523 0.93171 0.94033 0.95903 0.92741 0.93065 0.92264 0.95623 0.91153 0.91361 0.75113 0.91348 0.87785 0.86635 0.87358 0.77425 0.80095 0.87133 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.31 71.98 0.60 -2.81 16 2 C -0.08 -2.45 0.56 -52.10 -0.03 -2.48 16 3 C -0.13 -3.67 7.83 71.98 0.56 -3.11 16 4 C 0.13 5.47 2.88 86.36 0.25 5.72 16 5 N -0.61 -27.85 2.21 -699.08 -1.54 -29.40 16 6 C -0.24 -13.14 10.03 84.03 0.84 -12.30 16 7 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16 8 C -0.03 -1.73 5.23 84.86 0.44 -1.28 16 9 N -0.95 -59.23 13.97 21.65 0.30 -58.93 16 10 Si 0.94 46.43 24.35 68.60 1.67 48.10 16 11 H -0.27 -12.69 6.62 99.48 0.66 -12.03 16 12 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 13 H -0.27 -12.91 6.64 99.48 0.66 -12.25 16 14 C 0.15 5.57 6.52 86.36 0.56 6.13 16 15 C -0.13 -3.99 5.31 30.67 0.16 -3.83 16 16 C 0.17 4.86 1.57 45.01 0.07 4.93 16 17 H 0.07 2.14 7.58 -2.38 -0.02 2.13 16 18 N -0.71 -14.08 4.20 -442.40 -1.86 -15.94 16 19 C 0.52 10.57 7.10 87.66 0.62 11.19 16 20 O -0.57 -16.24 15.49 -3.02 -0.05 -16.29 16 21 C -0.10 -1.30 2.54 -11.37 -0.03 -1.33 16 22 H 0.13 1.17 8.12 -2.39 -0.02 1.15 16 23 C -0.11 -1.31 4.67 30.73 0.14 -1.16 16 24 C 0.10 0.78 6.98 86.47 0.60 1.38 16 25 N -0.46 -6.27 3.13 -513.83 -1.61 -7.88 16 26 C -0.04 -0.55 11.64 83.22 0.97 0.42 16 27 C -0.06 -1.13 11.87 83.54 0.99 -0.14 16 28 N -0.53 -12.31 11.24 -187.51 -2.11 -14.41 16 29 C 0.19 3.58 7.65 138.24 1.06 4.64 16 30 C -0.02 -0.29 5.47 30.08 0.16 -0.12 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.54 7.36 -2.39 -0.02 1.53 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.59 6.58 -2.39 -0.02 1.57 16 35 H 0.05 1.74 5.97 -2.39 -0.01 1.73 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.02 0.95 7.07 -2.38 -0.02 0.94 16 38 H 0.05 2.48 4.51 -2.39 -0.01 2.47 16 39 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 41 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 2.15 6.34 -2.39 -0.02 2.13 16 43 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.41 6.19 6.38 -92.71 -0.59 5.60 16 45 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 46 H 0.10 1.22 7.79 -2.39 -0.02 1.20 16 47 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.21 1.00 8.06 -2.91 -0.02 0.98 16 50 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 51 H 0.11 1.37 7.95 -2.38 -0.02 1.35 16 52 H 0.09 1.42 8.11 -2.39 -0.02 1.40 16 Total: -1.00 -75.93 390.39 3.03 -72.90 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.23 Total: 16.02 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 7.99 Total: 5.84 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -6.82 Total: -126.57 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.05 Total: -16.29 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.67 Total: 48.10 kcal Total: -75.93 3.03 -72.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940851556.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.069 kcal (2) G-P(sol) polarization free energy of solvation -75.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds