Wall clock time and date at job start Wed Apr 1 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 119.99993 * 2 1 4 4 C 1.38465 * 119.99845 * 180.02562 * 2 1 3 5 5 C 1.39391 * 119.53991 * 5.00161 * 4 2 1 6 6 C 1.36858 * 119.38141 * 180.02562 * 5 4 2 7 7 C 1.40349 * 118.48902 * 0.27019 * 6 5 4 8 8 C 1.47542 * 120.47737 * 179.70822 * 7 6 5 9 9 O 1.21592 * 119.99810 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00399 * 180.02562 * 8 7 6 11 11 C 1.46508 * 120.00191 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.45876 * 34.99720 * 11 10 8 13 13 C 1.53044 * 109.45608 * 275.02694 * 11 10 8 14 14 C 1.53195 * 109.30987 * 178.61586 * 13 11 10 15 15 N 1.46925 * 108.77740 * 54.63110 * 14 13 11 16 16 C 1.36940 * 120.63006 * 126.41133 * 15 14 13 17 17 H 1.07998 * 120.00188 * 332.61640 * 16 15 14 18 18 C 1.38815 * 119.99656 * 152.60662 * 16 15 14 19 19 N 1.31616 * 119.99531 * 159.35005 * 18 16 15 20 20 Si 1.86792 * 120.00201 * 339.34665 * 18 16 15 21 21 H 1.48502 * 109.47426 * 92.89161 * 20 18 16 22 22 H 1.48500 * 109.47181 * 212.89251 * 20 18 16 23 23 H 1.48501 * 109.47533 * 332.88710 * 20 18 16 24 24 C 1.46926 * 118.73886 * 306.39526 * 15 14 13 25 25 C 1.53040 * 109.45810 * 154.97497 * 11 10 8 26 26 C 1.52999 * 109.49632 * 301.33130 * 25 11 10 27 27 C 1.52998 * 109.50125 * 61.43279 * 25 11 10 28 28 C 1.39566 * 119.05096 * 359.47575 * 7 6 5 29 29 N 1.31679 * 120.51470 * 0.53892 * 28 7 6 30 30 H 1.08996 * 109.47188 * 270.00257 * 1 2 3 31 31 H 1.08994 * 109.46912 * 29.99941 * 1 2 3 32 32 H 1.09003 * 109.47176 * 149.99999 * 1 2 3 33 33 H 1.09006 * 109.47234 * 239.99714 * 3 2 1 34 34 H 1.09000 * 109.47281 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.47127 * 119.99943 * 3 2 1 36 36 H 1.07997 * 120.31119 * 359.97145 * 5 4 2 37 37 H 1.07999 * 120.75676 * 179.97438 * 6 5 4 38 38 H 0.96998 * 120.00187 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.49980 * 298.56406 * 13 11 10 40 40 H 1.08996 * 109.49929 * 58.62999 * 13 11 10 41 41 H 1.08999 * 109.58590 * 174.42084 * 14 13 11 42 42 H 1.09003 * 109.58385 * 294.70262 * 14 13 11 43 43 H 0.97004 * 119.99971 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.58565 * 173.39483 * 24 15 14 45 45 H 1.09003 * 109.58602 * 293.67214 * 24 15 14 46 46 H 1.08997 * 109.46784 * 60.00589 * 26 25 11 47 47 H 1.08995 * 109.47285 * 180.02562 * 26 25 11 48 48 H 1.09008 * 109.47431 * 300.00889 * 26 25 11 49 49 H 1.08996 * 109.46878 * 60.00085 * 27 25 11 50 50 H 1.09000 * 109.46533 * 179.97438 * 27 25 11 51 51 H 1.09001 * 109.47144 * 299.99736 * 27 25 11 52 52 H 1.07994 * 119.73924 * 180.25082 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1573 -1.1992 -0.0005 5 6 1.4547 -2.3983 -0.1068 6 6 2.1421 -3.5817 -0.1065 7 6 3.5405 -3.5435 0.0076 8 6 4.3247 -4.7932 0.0191 9 8 3.7599 -5.8662 -0.0701 10 7 5.6670 -4.7454 0.1296 11 6 6.4457 -5.9864 0.1416 12 1 5.9762 -6.7161 -0.5182 13 6 6.4943 -6.5440 1.5660 14 6 7.2798 -7.8592 1.5687 15 7 8.5995 -7.6231 0.9677 16 6 9.7429 -7.9718 1.6358 17 1 9.7503 -7.9998 2.7154 18 6 10.8924 -8.2895 0.9253 19 7 12.0680 -8.2269 1.5137 20 14 10.7706 -8.8059 -0.8657 21 1 10.9344 -7.6144 -1.7368 22 1 11.8382 -9.7922 -1.1702 23 1 9.4424 -9.4219 -1.1142 24 6 8.6692 -7.0061 -0.3640 25 6 7.8684 -5.7003 -0.3446 26 6 7.8170 -5.1122 -1.7561 27 6 8.5403 -4.7027 0.6010 28 6 4.1790 -2.3063 0.1050 29 7 3.4794 -1.1907 0.1008 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 2.8242 1.3264 -0.8900 34 1 1.4892 2.0972 -0.0005 35 1 2.8242 1.3264 0.8900 36 1 0.3777 -2.3937 -0.1878 37 1 1.6201 -4.5237 -0.1872 38 1 6.1177 -3.8895 0.2011 39 1 6.9861 -5.8252 2.2215 40 1 5.4797 -6.7249 1.9207 41 1 7.4024 -8.2095 2.5935 42 1 6.7405 -8.6080 0.9886 43 1 12.8712 -8.4493 1.0174 44 1 9.7086 -6.7936 -0.6143 45 1 8.2468 -7.6857 -1.1041 46 1 7.2446 -4.1847 -1.7426 47 1 8.8304 -4.9090 -2.1021 48 1 7.3394 -5.8242 -2.4293 49 1 8.5777 -5.1232 1.6058 50 1 9.5536 -4.4997 0.2544 51 1 7.9685 -3.7749 0.6163 52 1 5.2548 -2.2638 0.1891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940857758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:07 Heat of formation + Delta-G solvation = 41.879173 kcal Electronic energy + Delta-G solvation = -31339.425891 eV Core-core repulsion = 27340.113790 eV Total energy + Delta-G solvation = -3999.312101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.90770 -39.84749 -38.23704 -36.76999 -34.76744 -33.08401 -32.79545 -32.10780 -31.07305 -29.78671 -28.69841 -26.89980 -26.47148 -26.05806 -24.78224 -23.62325 -22.91536 -22.00984 -20.52653 -20.34642 -18.86097 -18.05319 -17.42417 -17.08750 -16.47271 -15.80962 -15.67203 -15.30245 -15.04303 -14.86053 -14.57983 -14.35344 -14.23947 -13.77239 -13.67622 -13.50860 -13.30560 -13.19728 -13.07770 -12.87069 -12.72734 -12.70230 -12.41167 -12.25690 -12.01325 -11.72326 -11.67181 -11.21464 -11.08482 -10.73315 -10.65121 -10.40362 -10.35146 -10.16321 -10.13145 -10.09374 -9.87889 -9.69055 -9.52119 -9.39948 -8.74588 -8.59136 -7.96534 -6.94769 -5.93052 -3.28201 0.67670 1.08984 2.45438 2.93886 3.30994 3.33023 3.50801 3.54139 3.79147 4.06102 4.44739 4.54780 4.60450 4.68414 4.78591 4.81379 4.90330 4.93226 4.95453 5.03141 5.15720 5.22020 5.27786 5.31451 5.36839 5.44244 5.45065 5.64168 5.74525 5.77055 5.87513 5.95470 5.98243 6.05944 6.12329 6.15989 6.26551 6.31542 6.38029 6.42130 6.45344 6.51432 6.61686 6.67665 6.72935 6.81707 6.85922 6.88377 7.05727 7.66911 7.73491 7.98258 8.34946 8.36554 8.96202 9.74306 10.12292 11.22899 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024948 B = 0.002358 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.079477 B =11869.198036 C =12194.441139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.612 5.612 3 C 0.102 3.898 4 C 0.417 3.583 5 C -0.247 4.247 6 C 0.024 3.976 7 C -0.246 4.246 8 C 0.567 3.433 9 O -0.545 6.545 10 N -0.717 5.717 11 C 0.164 3.836 12 H 0.083 0.917 13 C -0.145 4.145 14 C 0.150 3.850 15 N -0.603 5.603 16 C -0.255 4.255 17 H 0.086 0.914 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.878 3.122 21 H -0.288 1.288 22 H -0.304 1.304 23 H -0.270 1.270 24 C 0.140 3.860 25 C -0.089 4.089 26 C -0.140 4.140 27 C -0.130 4.130 28 C 0.188 3.812 29 N -0.544 5.544 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.394 0.606 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.024 0.976 43 H 0.262 0.738 44 H 0.077 0.923 45 H 0.026 0.974 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.076 0.924 50 H 0.055 0.945 51 H 0.034 0.966 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.394 18.857 -4.584 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.325 5.325 3 C -0.040 4.040 4 C 0.182 3.818 5 C -0.272 4.272 6 C -0.002 4.002 7 C -0.254 4.254 8 C 0.354 3.646 9 O -0.423 6.423 10 N -0.368 5.368 11 C 0.061 3.939 12 H 0.101 0.899 13 C -0.185 4.185 14 C 0.024 3.976 15 N -0.326 5.326 16 C -0.383 4.383 17 H 0.103 0.897 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.708 3.292 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.014 3.986 25 C -0.092 4.092 26 C -0.198 4.198 27 C -0.187 4.187 28 C 0.028 3.972 29 N -0.261 5.261 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.230 0.770 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.044 0.956 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.074 0.926 51 H 0.053 0.947 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.292 19.021 -4.562 29.657 hybrid contribution -0.112 -0.575 -1.099 1.245 sum -22.404 18.446 -5.660 29.568 Atomic orbital electron populations 1.21818 0.78149 1.03330 1.01902 1.46202 1.05398 1.03368 1.77506 1.21570 0.96508 0.83475 1.02484 1.18495 0.88573 0.85931 0.88810 1.21159 1.01314 0.91503 1.13214 1.21157 0.92512 0.98508 0.88031 1.20714 0.95217 0.94588 1.14928 1.17908 0.82158 0.88271 0.76313 1.90765 1.70548 1.30446 1.50560 1.46191 1.06079 1.10444 1.74113 1.20963 0.90218 0.84961 0.97770 0.89888 1.22451 1.00108 0.99897 0.96008 1.20897 0.85705 0.93045 0.97962 1.44365 1.02112 1.69177 1.16954 1.18899 0.86715 1.40757 0.91961 0.89654 1.25266 0.95340 0.99441 0.97465 1.69834 0.97214 1.50909 1.37153 0.87025 0.77192 0.78221 0.86721 1.21621 1.23224 1.19494 1.21401 0.98926 0.90373 0.87937 1.21361 0.94228 0.98664 0.94918 1.21835 1.01566 1.00202 0.96179 1.21770 0.99562 0.96177 1.01204 1.22644 0.99347 0.86126 0.89108 1.67238 1.05906 1.31337 1.21626 0.92612 0.90769 0.90758 0.92304 0.91155 0.92024 0.84481 0.83748 0.76976 0.91359 0.92250 0.91624 0.95755 0.92839 0.90485 0.95596 0.93103 0.92470 0.92942 0.90520 0.92594 0.94711 0.82540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 10.24 59.85 0.61 0.99 16 2 N -0.61 -4.62 3.38 -189.70 -0.64 -5.26 16 3 C 0.10 0.64 10.16 59.84 0.61 1.24 16 4 C 0.42 4.18 7.36 -155.27 -1.14 3.04 16 5 C -0.25 -2.27 9.20 -39.65 -0.36 -2.64 16 6 C 0.02 0.26 9.65 -39.29 -0.38 -0.12 16 7 C -0.25 -2.97 5.89 -104.81 -0.62 -3.59 16 8 C 0.57 8.23 7.73 -12.47 -0.10 8.13 16 9 O -0.54 -9.77 16.07 5.29 0.08 -9.69 16 10 N -0.72 -9.71 4.24 -54.80 -0.23 -9.94 16 11 C 0.16 2.68 1.57 -67.88 -0.11 2.57 16 12 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 13 C -0.14 -2.49 5.31 -26.61 -0.14 -2.63 16 14 C 0.15 3.01 6.52 -3.71 -0.02 2.98 16 15 N -0.60 -13.97 2.21 -172.31 -0.38 -14.35 16 16 C -0.26 -6.96 10.04 -15.06 -0.15 -7.11 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 19 N -0.91 -27.51 13.97 55.49 0.78 -26.74 16 20 Si 0.88 22.28 24.34 -169.99 -4.14 18.14 16 21 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 22 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 23 H -0.27 -6.80 6.64 56.52 0.38 -6.42 16 24 C 0.14 2.98 2.89 -3.71 -0.01 2.97 16 25 C -0.09 -1.50 0.56 -154.39 -0.09 -1.59 16 26 C -0.14 -2.03 8.31 37.16 0.31 -1.72 16 27 C -0.13 -2.11 7.83 37.16 0.29 -1.82 16 28 C 0.19 2.03 10.71 -17.12 -0.18 1.85 16 29 N -0.54 -6.09 9.54 -12.14 -0.12 -6.21 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.18 7.92 -51.93 -0.41 -0.23 16 32 H 0.07 0.27 5.95 -51.93 -0.31 -0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.26 7.79 -51.93 -0.40 -0.15 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.14 0.89 5.99 -52.49 -0.31 0.57 16 37 H 0.14 1.51 7.73 -52.49 -0.41 1.11 16 38 H 0.39 4.45 4.71 -40.82 -0.19 4.26 16 39 H 0.07 1.17 6.33 -51.93 -0.33 0.84 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.08 1.80 4.50 -51.93 -0.23 1.57 16 45 H 0.03 0.57 7.07 -51.93 -0.37 0.20 16 46 H 0.05 0.63 7.36 -51.93 -0.38 0.24 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 49 H 0.08 1.42 5.97 -51.93 -0.31 1.11 16 50 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 51 H 0.03 0.44 6.58 -51.93 -0.34 0.10 16 52 H 0.16 1.36 6.41 -52.49 -0.34 1.03 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -33.47 394.61 -8.41 -41.88 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.14 Total: 3.06 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.58 Total: 3.16 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.59 Total: -62.50 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.14 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.47 -8.41 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940857758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.755 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds