Wall clock time and date at job start Wed Apr 1 2020 04:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46495 * 119.99993 * 2 1 4 4 C 1.38465 * 119.99845 * 180.02562 * 2 1 3 5 5 C 1.39391 * 119.53991 * 5.00161 * 4 2 1 6 6 C 1.36858 * 119.38141 * 180.02562 * 5 4 2 7 7 C 1.40349 * 118.48902 * 0.27019 * 6 5 4 8 8 C 1.47542 * 120.47737 * 179.70822 * 7 6 5 9 9 O 1.21592 * 119.99810 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00399 * 180.02562 * 8 7 6 11 11 C 1.46508 * 120.00191 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.45876 * 34.99720 * 11 10 8 13 13 C 1.53044 * 109.45608 * 275.02694 * 11 10 8 14 14 C 1.53195 * 109.30987 * 178.61586 * 13 11 10 15 15 N 1.46925 * 108.77740 * 54.63110 * 14 13 11 16 16 C 1.36940 * 120.63006 * 126.41133 * 15 14 13 17 17 H 1.07998 * 120.00188 * 332.61640 * 16 15 14 18 18 C 1.38815 * 119.99656 * 152.60662 * 16 15 14 19 19 N 1.31616 * 119.99531 * 159.35005 * 18 16 15 20 20 Si 1.86792 * 120.00201 * 339.34665 * 18 16 15 21 21 H 1.48502 * 109.47426 * 92.89161 * 20 18 16 22 22 H 1.48500 * 109.47181 * 212.89251 * 20 18 16 23 23 H 1.48501 * 109.47533 * 332.88710 * 20 18 16 24 24 C 1.46926 * 118.73886 * 306.39526 * 15 14 13 25 25 C 1.53040 * 109.45810 * 154.97497 * 11 10 8 26 26 C 1.52999 * 109.49632 * 301.33130 * 25 11 10 27 27 C 1.52998 * 109.50125 * 61.43279 * 25 11 10 28 28 C 1.39566 * 119.05096 * 359.47575 * 7 6 5 29 29 N 1.31679 * 120.51470 * 0.53892 * 28 7 6 30 30 H 1.08996 * 109.47188 * 270.00257 * 1 2 3 31 31 H 1.08994 * 109.46912 * 29.99941 * 1 2 3 32 32 H 1.09003 * 109.47176 * 149.99999 * 1 2 3 33 33 H 1.09006 * 109.47234 * 239.99714 * 3 2 1 34 34 H 1.09000 * 109.47281 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.47127 * 119.99943 * 3 2 1 36 36 H 1.07997 * 120.31119 * 359.97145 * 5 4 2 37 37 H 1.07999 * 120.75676 * 179.97438 * 6 5 4 38 38 H 0.96998 * 120.00187 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.49980 * 298.56406 * 13 11 10 40 40 H 1.08996 * 109.49929 * 58.62999 * 13 11 10 41 41 H 1.08999 * 109.58590 * 174.42084 * 14 13 11 42 42 H 1.09003 * 109.58385 * 294.70262 * 14 13 11 43 43 H 0.97004 * 119.99971 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.58565 * 173.39483 * 24 15 14 45 45 H 1.09003 * 109.58602 * 293.67214 * 24 15 14 46 46 H 1.08997 * 109.46784 * 60.00589 * 26 25 11 47 47 H 1.08995 * 109.47285 * 180.02562 * 26 25 11 48 48 H 1.09008 * 109.47431 * 300.00889 * 26 25 11 49 49 H 1.08996 * 109.46878 * 60.00085 * 27 25 11 50 50 H 1.09000 * 109.46533 * 179.97438 * 27 25 11 51 51 H 1.09001 * 109.47144 * 299.99736 * 27 25 11 52 52 H 1.07994 * 119.73924 * 180.25082 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1573 -1.1992 -0.0005 5 6 1.4547 -2.3983 -0.1068 6 6 2.1421 -3.5817 -0.1065 7 6 3.5405 -3.5435 0.0076 8 6 4.3247 -4.7932 0.0191 9 8 3.7599 -5.8662 -0.0701 10 7 5.6670 -4.7454 0.1296 11 6 6.4457 -5.9864 0.1416 12 1 5.9762 -6.7161 -0.5182 13 6 6.4943 -6.5440 1.5660 14 6 7.2798 -7.8592 1.5687 15 7 8.5995 -7.6231 0.9677 16 6 9.7429 -7.9718 1.6358 17 1 9.7503 -7.9998 2.7154 18 6 10.8924 -8.2895 0.9253 19 7 12.0680 -8.2269 1.5137 20 14 10.7706 -8.8059 -0.8657 21 1 10.9344 -7.6144 -1.7368 22 1 11.8382 -9.7922 -1.1702 23 1 9.4424 -9.4219 -1.1142 24 6 8.6692 -7.0061 -0.3640 25 6 7.8684 -5.7003 -0.3446 26 6 7.8170 -5.1122 -1.7561 27 6 8.5403 -4.7027 0.6010 28 6 4.1790 -2.3063 0.1050 29 7 3.4794 -1.1907 0.1008 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 2.8242 1.3264 -0.8900 34 1 1.4892 2.0972 -0.0005 35 1 2.8242 1.3264 0.8900 36 1 0.3777 -2.3937 -0.1878 37 1 1.6201 -4.5237 -0.1872 38 1 6.1177 -3.8895 0.2011 39 1 6.9861 -5.8252 2.2215 40 1 5.4797 -6.7249 1.9207 41 1 7.4024 -8.2095 2.5935 42 1 6.7405 -8.6080 0.9886 43 1 12.8712 -8.4493 1.0174 44 1 9.7086 -6.7936 -0.6143 45 1 8.2468 -7.6857 -1.1041 46 1 7.2446 -4.1847 -1.7426 47 1 8.8304 -4.9090 -2.1021 48 1 7.3394 -5.8242 -2.4293 49 1 8.5777 -5.1232 1.6058 50 1 9.5536 -4.4997 0.2544 51 1 7.9685 -3.7749 0.6163 52 1 5.2548 -2.2638 0.1891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940857758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:06 Heat of formation + Delta-G solvation = 20.708642 kcal Electronic energy + Delta-G solvation = -31340.343914 eV Core-core repulsion = 27340.113790 eV Total energy + Delta-G solvation = -4000.230124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.82678 -40.99617 -39.51825 -37.42965 -36.38281 -34.43214 -33.94109 -33.58701 -32.32755 -31.08274 -29.12153 -28.20647 -27.75202 -27.33784 -26.19326 -24.42372 -24.32495 -22.93704 -22.17666 -21.41833 -20.14521 -19.30535 -18.56898 -18.14084 -17.66503 -17.16623 -16.54506 -16.39914 -16.14247 -16.06871 -15.88448 -15.56923 -15.29131 -15.17695 -14.94720 -14.74598 -14.49067 -14.32593 -14.12277 -14.02350 -13.72917 -13.66967 -13.39855 -13.19725 -13.12624 -13.00747 -12.85330 -12.67957 -12.61967 -12.38923 -12.28473 -12.05368 -11.82219 -11.53987 -11.42716 -11.25443 -11.11700 -11.05768 -10.84375 -10.66480 -10.41638 -9.99891 -8.91817 -8.61431 -8.13906 -5.44786 -0.14601 0.33530 1.28931 1.41959 1.50038 1.91966 1.94020 2.18141 2.42446 2.94544 3.07102 3.33755 3.38629 3.62683 3.80643 3.88998 3.90797 3.95722 3.97276 4.12873 4.28896 4.31561 4.32086 4.44601 4.49552 4.54178 4.58816 4.65171 4.69023 4.77295 4.78871 4.84321 4.87072 4.89343 4.94690 4.96754 4.97427 5.02070 5.06119 5.11417 5.18929 5.25071 5.34079 5.36338 5.41136 5.54266 5.65586 5.89088 5.89528 6.15411 6.24041 6.59463 6.92802 7.00341 7.27468 7.63968 8.05184 9.05832 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024948 B = 0.002358 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.079477 B =11869.198036 C =12194.441139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.611 5.611 3 C 0.100 3.900 4 C 0.408 3.592 5 C -0.242 4.242 6 C 0.015 3.985 7 C -0.265 4.265 8 C 0.570 3.430 9 O -0.584 6.584 10 N -0.705 5.705 11 C 0.176 3.824 12 H 0.067 0.933 13 C -0.132 4.132 14 C 0.147 3.853 15 N -0.613 5.613 16 C -0.238 4.238 17 H 0.055 0.945 18 C -0.030 4.030 19 N -0.954 5.954 20 Si 0.936 3.064 21 H -0.271 1.271 22 H -0.313 1.313 23 H -0.268 1.268 24 C 0.135 3.865 25 C -0.081 4.081 26 C -0.137 4.137 27 C -0.126 4.126 28 C 0.193 3.807 29 N -0.561 5.561 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.164 0.836 37 H 0.143 0.857 38 H 0.408 0.592 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.026 0.974 43 H 0.260 0.740 44 H 0.057 0.943 45 H 0.024 0.976 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.051 0.949 49 H 0.049 0.951 50 H 0.045 0.955 51 H 0.075 0.925 52 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.125 21.716 -6.025 33.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.321 5.321 3 C -0.043 4.043 4 C 0.172 3.828 5 C -0.267 4.267 6 C -0.010 4.010 7 C -0.274 4.274 8 C 0.359 3.641 9 O -0.465 6.465 10 N -0.357 5.357 11 C 0.071 3.929 12 H 0.085 0.915 13 C -0.172 4.172 14 C 0.021 3.979 15 N -0.337 5.337 16 C -0.368 4.368 17 H 0.073 0.927 18 C -0.225 4.225 19 N -0.600 5.600 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.242 1.242 23 H -0.192 1.192 24 C 0.009 3.991 25 C -0.083 4.083 26 C -0.195 4.195 27 C -0.183 4.183 28 C 0.033 3.967 29 N -0.279 5.279 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.182 0.818 37 H 0.160 0.840 38 H 0.246 0.754 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.042 0.958 46 H 0.097 0.903 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.064 0.936 51 H 0.093 0.907 52 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -25.089 21.953 -6.020 33.877 hybrid contribution 0.578 -1.344 -0.561 1.567 sum -24.511 20.610 -6.580 32.693 Atomic orbital electron populations 1.22086 0.76115 1.04852 1.02877 1.46570 1.06777 1.02950 1.75825 1.21664 0.97176 0.83864 1.01590 1.18861 0.88578 0.87181 0.88220 1.21369 1.02577 0.90535 1.12186 1.21257 0.92332 0.99188 0.88267 1.20514 0.95512 0.93722 1.17667 1.18237 0.82104 0.88602 0.75136 1.90745 1.71228 1.32083 1.52476 1.45924 1.05844 1.09980 1.73943 1.20618 0.90021 0.85832 0.96448 0.91520 1.22276 0.99625 0.98284 0.97006 1.21004 0.84606 0.94840 0.97432 1.44432 1.01971 1.69701 1.17552 1.18808 0.88001 1.38993 0.90967 0.92745 1.25797 0.95044 1.00423 1.01245 1.69950 0.97882 1.53315 1.38869 0.86075 0.76640 0.78013 0.82722 1.19774 1.24201 1.19242 1.21439 0.98596 0.92502 0.86551 1.21204 0.93684 0.96465 0.96986 1.21819 1.02298 1.01284 0.94055 1.21720 0.99717 0.97597 0.99276 1.22869 1.00199 0.85542 0.88115 1.67307 1.06688 1.31345 1.22604 0.91818 0.88578 0.90013 0.93031 0.88237 0.93062 0.81830 0.83952 0.75377 0.91138 0.91778 0.92181 0.95548 0.93052 0.92520 0.95811 0.90295 0.92260 0.92969 0.93148 0.93628 0.90666 0.80759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.40 10.24 127.77 1.31 1.70 16 2 N -0.61 -7.40 3.38 -754.10 -2.55 -9.94 16 3 C 0.10 0.97 10.16 127.77 1.30 2.27 16 4 C 0.41 7.17 7.36 133.25 0.98 8.15 16 5 C -0.24 -3.86 9.20 22.22 0.20 -3.66 16 6 C 0.02 0.31 9.65 22.46 0.22 0.53 16 7 C -0.27 -5.96 5.89 -19.99 -0.12 -6.08 16 8 C 0.57 15.73 7.73 86.70 0.67 16.40 16 9 O -0.58 -20.59 16.07 -4.00 -0.06 -20.66 16 10 N -0.71 -17.55 4.24 -445.55 -1.89 -19.44 16 11 C 0.18 5.46 1.57 45.02 0.07 5.53 16 12 H 0.07 2.36 7.58 -2.39 -0.02 2.34 16 13 C -0.13 -4.45 5.31 30.67 0.16 -4.28 16 14 C 0.15 5.91 6.52 86.36 0.56 6.47 16 15 N -0.61 -28.66 2.21 -699.07 -1.54 -30.21 16 16 C -0.24 -13.36 10.04 84.03 0.84 -12.52 16 17 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 18 C -0.03 -1.76 5.23 84.86 0.44 -1.32 16 19 N -0.95 -59.64 13.97 21.65 0.30 -59.33 16 20 Si 0.94 46.86 24.34 68.60 1.67 48.53 16 21 H -0.27 -12.68 6.62 99.48 0.66 -12.03 16 22 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 23 H -0.27 -13.12 6.64 99.48 0.66 -12.46 16 24 C 0.13 5.66 2.89 86.36 0.25 5.91 16 25 C -0.08 -2.60 0.56 -52.10 -0.03 -2.63 16 26 C -0.14 -3.59 8.31 71.98 0.60 -3.00 16 27 C -0.13 -3.88 7.83 71.98 0.56 -3.31 16 28 C 0.19 3.73 10.71 85.04 0.91 4.64 16 29 N -0.56 -11.31 9.54 -192.32 -1.84 -13.15 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.10 0.07 7.92 -2.39 -0.02 0.05 16 32 H 0.08 0.29 5.95 -2.39 -0.01 0.27 16 33 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.10 0.37 7.79 -2.39 -0.02 0.35 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.16 1.59 5.99 -2.91 -0.02 1.57 16 37 H 0.14 2.87 7.73 -2.91 -0.02 2.84 16 38 H 0.41 7.88 4.71 -92.71 -0.44 7.45 16 39 H 0.07 2.36 6.33 -2.39 -0.02 2.34 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.06 2.62 4.50 -2.38 -0.01 2.61 16 45 H 0.02 1.02 7.07 -2.39 -0.02 1.00 16 46 H 0.08 1.64 7.36 -2.39 -0.02 1.62 16 47 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 49 H 0.05 1.83 5.97 -2.39 -0.01 1.81 16 50 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.07 1.67 6.58 -2.39 -0.02 1.66 16 52 H 0.18 2.50 6.41 -2.91 -0.02 2.48 16 Total: -1.00 -74.78 394.61 3.44 -71.34 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.40 Total: 18.04 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 8.94 Total: 14.81 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -7.51 Total: -132.07 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.06 Total: -20.66 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.67 Total: 48.53 kcal Total: -74.78 3.44 -71.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940857758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.049 kcal (2) G-P(sol) polarization free energy of solvation -74.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds