Wall clock time and date at job start Wed Apr 1 2020 04:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.52242 * 2 1 4 4 C 1.53198 * 109.49734 * 239.91789 * 2 1 3 5 5 N 1.46922 * 108.77332 * 185.40960 * 4 2 1 6 6 C 1.36939 * 120.63181 * 233.58273 * 5 4 2 7 7 H 1.08000 * 119.99929 * 152.63048 * 6 5 4 8 8 C 1.38807 * 119.99991 * 332.63715 * 6 5 4 9 9 N 1.31620 * 120.00085 * 159.33848 * 8 6 5 10 10 Si 1.86799 * 120.00014 * 339.33467 * 8 6 5 11 11 H 1.48501 * 109.47010 * 92.89220 * 10 8 6 12 12 H 1.48497 * 109.47336 * 212.89253 * 10 8 6 13 13 H 1.48503 * 109.47496 * 332.89578 * 10 8 6 14 14 C 1.46927 * 118.73850 * 53.61494 * 5 4 2 15 15 C 1.53194 * 108.77513 * 306.38602 * 14 5 4 16 16 C 1.53036 * 109.31187 * 54.63382 * 15 14 5 17 17 H 1.08998 * 109.45817 * 58.66103 * 16 15 14 18 18 N 1.46502 * 109.46318 * 178.63125 * 16 15 14 19 19 C 1.34781 * 119.99697 * 275.03229 * 18 16 15 20 20 O 1.21570 * 120.00106 * 359.97438 * 19 18 16 21 21 C 1.47711 * 119.99788 * 179.97438 * 19 18 16 22 22 N 1.32207 * 126.67816 * 359.67966 * 21 19 18 23 23 N 1.28845 * 110.15211 * 179.84251 * 22 21 19 24 24 H 0.97001 * 124.98315 * 180.02562 * 23 22 21 25 25 C 1.34311 * 110.03792 * 0.37020 * 23 22 21 26 26 C 1.35590 * 107.21865 * 359.84725 * 25 23 22 27 27 C 1.50379 * 124.61836 * 179.79134 * 26 25 23 28 28 C 1.53476 * 108.28279 * 343.75115 * 27 26 25 29 29 C 1.53098 * 109.51249 * 49.49019 * 28 27 26 30 30 C 1.50716 * 128.90523 * 179.88576 * 25 23 22 31 31 H 1.08997 * 109.47079 * 299.92042 * 1 2 3 32 32 H 1.09000 * 109.47555 * 59.92253 * 1 2 3 33 33 H 1.09001 * 109.47265 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46991 * 180.08496 * 3 2 1 35 35 H 1.09002 * 109.46925 * 300.07635 * 3 2 1 36 36 H 1.08999 * 109.47527 * 60.08337 * 3 2 1 37 37 H 1.09000 * 109.58218 * 65.62641 * 4 2 1 38 38 H 1.08994 * 109.70423 * 305.26816 * 4 2 1 39 39 H 0.97000 * 120.00401 * 179.97438 * 9 8 6 40 40 H 1.08998 * 109.58520 * 186.60226 * 14 5 4 41 41 H 1.09001 * 109.70766 * 66.24118 * 14 5 4 42 42 H 1.09005 * 109.49460 * 294.68370 * 15 14 5 43 43 H 1.09000 * 109.52535 * 174.60782 * 15 14 5 44 44 H 0.97000 * 120.00116 * 95.02171 * 18 16 15 45 45 H 1.08993 * 109.70103 * 103.45354 * 27 26 25 46 46 H 1.09006 * 109.69867 * 224.06108 * 27 26 25 47 47 H 1.09003 * 109.46896 * 289.46917 * 28 27 26 48 48 H 1.09004 * 109.45939 * 169.50246 * 28 27 26 49 49 H 1.09005 * 109.44153 * 169.89208 * 29 28 27 50 50 H 1.08997 * 109.41655 * 49.98399 * 29 28 27 51 51 H 1.08995 * 109.68948 * 283.02928 * 30 25 23 52 52 H 1.09003 * 109.68613 * 43.60475 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4420 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5046 -0.8291 -1.1696 6 6 4.2935 -0.3793 -2.1946 7 1 5.3005 -0.0444 -1.9939 8 6 3.7989 -0.3537 -3.4913 9 7 4.3573 0.4254 -4.3933 10 14 2.3410 -1.4250 -3.9562 11 1 1.0850 -0.6498 -3.7922 12 1 2.4751 -1.8568 -5.3706 13 1 2.3037 -2.6199 -3.0752 14 6 4.1053 -1.4267 0.0307 15 6 3.5709 -0.6950 1.2660 16 6 2.0409 -0.7231 1.2483 17 1 1.6968 -1.7572 1.2354 18 7 1.5265 -0.0526 2.4451 19 6 1.3977 -0.7379 3.5985 20 8 1.7080 -1.9124 3.6457 21 6 0.8797 -0.0617 4.8053 22 7 0.5105 1.2039 4.9044 23 7 0.1060 1.4559 6.1014 24 1 -0.2137 2.3180 6.4105 25 6 0.1991 0.3519 6.8607 26 6 0.6892 -0.6369 6.0729 27 6 0.9534 -2.0440 6.5329 28 6 0.9730 -2.0532 8.0675 29 6 -0.2688 -1.3328 8.5991 30 6 -0.1546 0.1703 8.3144 31 1 -0.3633 0.5126 0.8907 32 1 -0.3634 0.5150 -0.8893 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1313 1.4410 -0.0015 35 1 1.6772 1.9566 -0.8893 36 1 1.6796 1.9558 0.8907 37 1 1.7637 -0.1579 -2.1389 38 1 1.6054 -1.7216 -1.3006 39 1 4.0120 0.4430 -5.2996 40 1 5.1895 -1.3245 -0.0138 41 1 3.8397 -2.4823 0.0880 42 1 3.9160 0.3389 1.2540 43 1 3.9335 -1.1891 2.1673 44 1 1.2788 0.8845 2.4074 45 1 0.1640 -2.7030 6.1715 46 1 1.9174 -2.3805 6.1511 47 1 1.8687 -1.5432 8.4224 48 1 0.9762 -3.0831 8.4244 49 1 -0.3490 -1.4933 9.6743 50 1 -1.1565 -1.7290 8.1060 51 1 0.6259 0.6042 8.9393 52 1 -1.1070 0.6572 8.5242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940861867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:27 Heat of formation + Delta-G solvation = 23.202175 kcal Electronic energy + Delta-G solvation = -31877.439288 eV Core-core repulsion = 27877.317292 eV Total energy + Delta-G solvation = -4000.121996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.84924 -41.34533 -39.54141 -37.81408 -36.37693 -34.43051 -33.98089 -33.59889 -31.85667 -30.91221 -30.38344 -28.25340 -27.77801 -27.11357 -25.20480 -24.66938 -23.80485 -22.99813 -22.20146 -21.17512 -20.01243 -19.97899 -18.95600 -18.69072 -17.86351 -17.28076 -17.02175 -16.71333 -16.08866 -15.91753 -15.57078 -15.43467 -15.23300 -15.01528 -14.81822 -14.65741 -14.54106 -14.44986 -14.27772 -14.06769 -13.88397 -13.72093 -13.22735 -13.04650 -12.97444 -12.88259 -12.66194 -12.42117 -12.31215 -12.07947 -11.87994 -11.84053 -11.72726 -11.66628 -11.58393 -11.55665 -11.45919 -11.22120 -11.05140 -10.66505 -10.40393 -9.97613 -9.61548 -8.93304 -8.14742 -5.45937 0.49712 1.09363 1.28701 1.41349 1.49754 1.84772 2.21814 2.35194 2.41932 3.05503 3.30627 3.37468 3.58853 3.65044 3.86120 3.88374 3.92472 4.06168 4.20515 4.26228 4.28321 4.31669 4.36926 4.46918 4.55663 4.60785 4.65945 4.67942 4.73076 4.77951 4.81096 4.84242 4.92743 4.98038 4.99835 5.02961 5.06495 5.08207 5.15810 5.17912 5.26646 5.30057 5.31582 5.34087 5.48127 5.49440 5.51981 5.59947 5.88218 6.11713 6.14537 6.48692 6.86557 6.91446 7.18300 7.62693 8.04013 9.05010 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025016 B = 0.002568 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.001159 B =10901.272074 C =11204.528401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 C -0.124 4.124 4 C 0.136 3.864 5 N -0.613 5.613 6 C -0.240 4.240 7 H 0.055 0.945 8 C -0.029 4.029 9 N -0.954 5.954 10 Si 0.936 3.064 11 H -0.272 1.272 12 H -0.312 1.312 13 H -0.266 1.266 14 C 0.148 3.852 15 C -0.132 4.132 16 C 0.174 3.826 17 H 0.071 0.929 18 N -0.697 5.697 19 C 0.598 3.402 20 O -0.563 6.563 21 C -0.031 4.031 22 N -0.273 5.273 23 N -0.356 5.356 24 H 0.462 0.538 25 C 0.027 3.973 26 C -0.171 4.171 27 C -0.043 4.043 28 C -0.117 4.117 29 C -0.113 4.113 30 C -0.045 4.045 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.061 0.939 41 H 0.030 0.970 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.410 0.590 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.098 0.902 50 H 0.062 0.938 51 H 0.102 0.898 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.269 2.032 30.975 34.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 C -0.181 4.181 4 C 0.010 3.990 5 N -0.336 5.336 6 C -0.369 4.369 7 H 0.073 0.927 8 C -0.224 4.224 9 N -0.600 5.600 10 Si 0.765 3.235 11 H -0.198 1.198 12 H -0.241 1.241 13 H -0.191 1.191 14 C 0.023 3.977 15 C -0.172 4.172 16 C 0.069 3.931 17 H 0.089 0.911 18 N -0.348 5.348 19 C 0.384 3.616 20 O -0.440 6.440 21 C -0.189 4.189 22 N -0.111 5.111 23 N -0.071 5.071 24 H 0.310 0.690 25 C -0.101 4.101 26 C -0.182 4.182 27 C -0.081 4.081 28 C -0.155 4.155 29 C -0.151 4.151 30 C -0.083 4.083 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.248 0.752 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.117 0.883 50 H 0.081 0.919 51 H 0.120 0.880 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.102 2.196 30.185 33.389 hybrid contribution -0.281 -0.291 -0.870 0.959 sum -14.382 1.905 29.316 32.709 Atomic orbital electron populations 1.21802 0.92876 1.02121 1.02560 1.21198 0.96315 0.96688 0.94070 1.21696 1.01383 0.93988 1.01066 1.21435 0.83764 0.97137 0.96669 1.44427 1.01266 1.70339 1.17612 1.18812 0.97686 1.34222 0.86189 0.92738 1.25793 1.00951 0.99950 0.95740 1.69950 1.45652 1.39969 1.04468 0.86075 0.80609 0.81074 0.75726 1.19838 1.24111 1.19058 1.20994 0.97147 0.94561 0.85011 1.22284 0.95266 1.01572 0.98096 1.20695 0.93258 0.96181 0.82939 0.91130 1.45939 1.64873 1.14971 1.09055 1.17193 0.77060 0.85389 0.81973 1.90755 1.51867 1.16607 1.84762 1.21502 1.09728 0.91835 0.95880 1.73765 1.16892 1.16689 1.03744 1.43068 1.45743 1.12785 1.05516 0.68960 1.21661 1.04307 0.86538 0.97618 1.20163 1.07465 0.98813 0.91716 1.19952 1.01303 0.90209 0.96679 1.21660 0.99128 1.01881 0.92806 1.21586 0.97795 0.93108 1.02596 1.20452 1.03926 0.98642 0.85327 0.90977 0.92105 0.92719 0.93095 0.93518 0.91364 0.92433 0.95517 0.93022 0.92050 0.95235 0.91452 0.91673 0.75201 0.91731 0.92375 0.91533 0.90258 0.88316 0.91875 0.87954 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 8.31 71.98 0.60 -3.29 16 2 C -0.08 -2.74 0.56 -52.10 -0.03 -2.77 16 3 C -0.12 -4.16 7.83 71.98 0.56 -3.59 16 4 C 0.14 5.84 2.89 86.37 0.25 6.09 16 5 N -0.61 -29.18 2.21 -699.10 -1.54 -30.72 16 6 C -0.24 -13.60 10.03 84.03 0.84 -12.76 16 7 H 0.05 3.38 8.06 -2.91 -0.02 3.35 16 8 C -0.03 -1.73 5.23 84.86 0.44 -1.29 16 9 N -0.95 -60.10 13.97 21.65 0.30 -59.79 16 10 Si 0.94 47.19 24.34 68.60 1.67 48.86 16 11 H -0.27 -12.85 6.62 99.48 0.66 -12.19 16 12 H -0.31 -16.04 7.11 99.48 0.71 -15.34 16 13 H -0.27 -13.09 6.64 99.48 0.66 -12.43 16 14 C 0.15 6.09 6.52 86.36 0.56 6.65 16 15 C -0.13 -4.68 5.31 30.67 0.16 -4.51 16 16 C 0.17 5.79 1.57 45.02 0.07 5.86 16 17 H 0.07 2.59 7.57 -2.39 -0.02 2.57 16 18 N -0.70 -20.24 4.29 -445.40 -1.91 -22.15 16 19 C 0.60 18.74 7.79 86.75 0.68 19.42 16 20 O -0.56 -20.83 15.46 -3.94 -0.06 -20.89 16 21 C -0.03 -0.83 7.12 42.14 0.30 -0.53 16 22 N -0.27 -5.96 11.96 -48.62 -0.58 -6.54 16 23 N -0.36 -4.92 6.82 -48.17 -0.33 -5.24 16 24 H 0.46 2.46 8.96 -219.80 -1.97 0.49 16 25 C 0.03 0.39 7.12 41.57 0.30 0.69 16 26 C -0.17 -3.80 5.99 -20.03 -0.12 -3.92 16 27 C -0.04 -0.89 5.54 29.91 0.17 -0.73 16 28 C -0.12 -1.43 5.91 30.79 0.18 -1.25 16 29 C -0.11 -0.82 5.89 30.76 0.18 -0.64 16 30 C -0.04 -0.26 6.31 29.99 0.19 -0.07 16 31 H 0.07 1.77 7.36 -2.39 -0.02 1.76 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.96 5.97 -2.38 -0.01 1.95 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.82 6.58 -2.39 -0.02 1.81 16 37 H 0.06 2.71 4.50 -2.39 -0.01 2.70 16 38 H 0.03 1.16 7.07 -2.39 -0.02 1.14 16 39 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 2.40 6.34 -2.38 -0.02 2.39 16 43 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.41 10.61 6.39 -92.71 -0.59 10.02 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 1.48 7.67 -2.38 -0.02 1.46 16 47 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 48 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 49 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 50 H 0.06 0.56 8.11 -2.39 -0.02 0.54 16 51 H 0.10 0.31 8.14 -2.39 -0.02 0.30 16 52 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 Total: -1.00 -74.80 389.69 1.18 -73.62 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -1.71 Total: 19.49 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 5.33 Total: 3.36 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -4.06 Total: -124.44 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.89 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.67 Total: 48.86 kcal Total: -74.80 1.18 -73.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940861867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.823 kcal (2) G-P(sol) polarization free energy of solvation -74.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds