Wall clock time and date at job start Wed Apr 1 2020 04:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32136 * 119.90024 * 2 1 4 4 C 1.32090 * 120.07065 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.06306 * 180.02562 * 4 3 2 6 6 C 1.39443 * 119.86918 * 0.02562 * 4 3 2 7 7 C 1.48153 * 120.09389 * 180.02562 * 6 4 3 8 8 O 1.21517 * 120.00139 * 354.23655 * 7 6 4 9 9 N 1.34770 * 120.00084 * 174.24307 * 7 6 4 10 10 C 1.46500 * 120.00413 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.45449 * 325.02236 * 10 9 7 12 12 C 1.53044 * 109.45986 * 84.99463 * 10 9 7 13 13 C 1.53194 * 109.31159 * 181.37488 * 12 10 9 14 14 N 1.46928 * 108.77326 * 305.36980 * 13 12 10 15 15 C 1.36944 * 120.62538 * 233.58190 * 14 13 12 16 16 H 1.08002 * 119.99599 * 150.08982 * 15 14 13 17 17 C 1.38805 * 120.00119 * 330.09318 * 15 14 13 18 18 N 1.31617 * 120.00360 * 334.97696 * 17 15 14 19 19 Si 1.86803 * 120.00034 * 154.98021 * 17 15 14 20 20 H 1.48500 * 109.47145 * 59.99941 * 19 17 15 21 21 H 1.48502 * 109.47250 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47040 * 299.99596 * 19 17 15 23 23 C 1.46915 * 118.74302 * 53.85814 * 14 13 12 24 24 C 1.53033 * 109.45174 * 205.05877 * 10 9 7 25 25 C 1.52994 * 109.49988 * 298.57127 * 24 10 9 26 26 C 1.53005 * 109.49815 * 58.66619 * 24 10 9 27 27 N 1.33000 * 119.80910 * 0.27089 * 6 4 3 28 28 C 1.31806 * 119.92592 * 359.45203 * 27 6 4 29 29 C 1.50693 * 119.93745 * 180.27146 * 28 27 6 30 30 H 1.08994 * 109.47240 * 89.99404 * 1 2 3 31 31 H 1.08998 * 109.46902 * 209.99853 * 1 2 3 32 32 H 1.08999 * 109.46854 * 329.99678 * 1 2 3 33 33 H 1.08994 * 109.47305 * 265.46831 * 5 4 3 34 34 H 1.09002 * 109.47151 * 25.47272 * 5 4 3 35 35 H 1.09001 * 109.46993 * 145.47260 * 5 4 3 36 36 H 0.97003 * 119.99717 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.49439 * 61.42936 * 12 10 9 38 38 H 1.08999 * 109.52632 * 301.34448 * 12 10 9 39 39 H 1.08995 * 109.58894 * 185.57593 * 13 12 10 40 40 H 1.09003 * 109.70278 * 65.21854 * 13 12 10 41 41 H 0.97008 * 119.99405 * 354.17851 * 18 17 15 42 42 H 1.09001 * 109.58602 * 65.92858 * 23 14 13 43 43 H 1.08998 * 109.59156 * 186.34861 * 23 14 13 44 44 H 1.09006 * 109.47441 * 59.99962 * 25 24 10 45 45 H 1.09000 * 109.47734 * 179.97438 * 25 24 10 46 46 H 1.08999 * 109.47428 * 300.00115 * 25 24 10 47 47 H 1.09006 * 109.46979 * 60.00091 * 26 24 10 48 48 H 1.09000 * 109.47025 * 179.97438 * 26 24 10 49 49 H 1.08994 * 109.47204 * 300.00306 * 26 24 10 50 50 H 1.08998 * 109.47299 * 270.27869 * 29 28 27 51 51 H 1.08999 * 109.47236 * 30.27933 * 29 28 27 52 52 H 1.09000 * 109.47238 * 150.27983 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4866 1.1494 -0.0005 5 6 4.2376 2.4558 0.0001 6 6 4.1847 -0.0577 -0.0016 7 6 5.6662 -0.0591 -0.0016 8 8 6.2748 0.9874 -0.1063 9 7 6.3390 -1.2211 0.1144 10 6 7.8040 -1.2226 0.1139 11 1 8.1675 -0.4438 -0.5564 12 6 8.3146 -0.9547 1.5315 13 6 9.8462 -0.9229 1.5207 14 7 10.3409 -2.1726 0.9271 15 6 11.2489 -2.9505 1.5948 16 1 11.2567 -4.0201 1.4454 17 6 12.1590 -2.3644 2.4636 18 7 12.5034 -1.1041 2.3041 19 14 12.8952 -3.3643 3.8592 20 1 13.6303 -4.5274 3.3007 21 1 13.8322 -2.5141 4.6367 22 1 11.8088 -3.8463 4.7495 23 6 9.8477 -2.5686 -0.3989 24 6 8.3120 -2.5847 -0.3642 25 6 7.8309 -3.6748 0.5955 26 6 7.7740 -2.8662 -1.7686 27 7 3.5166 -1.2078 -0.0076 28 6 2.1986 -1.2026 -0.0015 29 6 1.4415 -2.5055 -0.0021 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 4.4887 2.7311 -1.0242 34 1 3.6145 3.2329 0.4428 35 1 5.1529 2.3485 0.5821 36 1 5.8531 -2.0565 0.1983 37 1 7.9719 -1.7467 2.1974 38 1 7.9333 0.0048 1.8808 39 1 10.2170 -0.8313 2.5415 40 1 10.1920 -0.0754 0.9289 41 1 12.1877 -0.6091 1.5318 42 1 10.1916 -1.8527 -1.1455 43 1 10.2195 -3.5632 -0.6451 44 1 6.7412 -3.6820 0.6204 45 1 8.1926 -4.6448 0.2544 46 1 8.2157 -3.4743 1.5954 47 1 8.1184 -2.0899 -2.4520 48 1 8.1365 -3.8362 -2.1089 49 1 6.6843 -2.8727 -1.7457 50 1 1.2585 -2.8190 -1.0298 51 1 2.0286 -3.2672 0.5110 52 1 0.4896 -2.3729 0.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940875749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:36 Heat of formation + Delta-G solvation = 21.894329 kcal Electronic energy + Delta-G solvation = -31842.774427 eV Core-core repulsion = 27842.595719 eV Total energy + Delta-G solvation = -4000.178709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.74949 -39.95882 -38.25456 -35.45068 -34.79264 -34.58764 -33.18713 -31.41770 -30.46637 -29.94960 -29.10555 -26.95934 -26.67461 -25.74101 -24.82998 -23.86227 -22.73232 -21.91783 -20.70297 -20.45142 -18.73672 -18.35768 -17.48242 -16.98898 -16.11046 -15.75662 -15.47791 -14.95001 -14.70875 -14.33515 -14.07745 -13.98554 -13.80684 -13.63448 -13.55814 -13.46346 -13.41512 -13.25253 -12.97344 -12.82851 -12.46918 -12.42292 -12.32314 -12.19900 -11.99139 -11.83455 -11.61167 -11.30667 -11.08688 -10.97347 -10.91424 -10.70758 -10.58693 -10.33210 -10.10740 -10.03023 -9.93349 -9.85623 -9.34067 -9.21968 -9.19809 -8.69581 -8.33228 -6.85476 -6.04765 -3.23633 0.14331 0.73581 2.62103 3.05236 3.47899 3.50133 3.53297 3.64656 3.66547 3.71466 4.04887 4.32098 4.59579 4.59967 4.77473 4.88361 4.98446 5.01863 5.08034 5.15649 5.18187 5.29539 5.31595 5.36442 5.44194 5.51982 5.54173 5.59549 5.71759 5.77392 5.79054 5.90823 5.92002 5.98811 6.09371 6.15329 6.21729 6.29752 6.34849 6.41544 6.48726 6.54284 6.70336 6.72829 6.80378 6.88128 6.90107 7.08285 7.20850 7.36334 7.65587 8.03875 8.22579 8.59781 9.13081 9.85812 10.31396 11.23046 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.002672 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.797771 B =10476.352209 C =10922.809470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.104 3.896 3 N -0.444 5.444 4 C 0.139 3.861 5 C -0.109 4.109 6 C 0.026 3.974 7 C 0.570 3.430 8 O -0.524 6.524 9 N -0.697 5.697 10 C 0.162 3.838 11 H 0.083 0.917 12 C -0.145 4.145 13 C 0.156 3.844 14 N -0.595 5.595 15 C -0.350 4.350 16 H 0.055 0.945 17 C -0.022 4.022 18 N -0.913 5.913 19 Si 1.063 2.937 20 H -0.293 1.293 21 H -0.286 1.286 22 H -0.294 1.294 23 C 0.162 3.838 24 C -0.088 4.088 25 C -0.131 4.131 26 C -0.137 4.137 27 N -0.407 5.407 28 C 0.067 3.933 29 C -0.102 4.102 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.405 0.595 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.019 0.981 41 H 0.270 0.730 42 H 0.018 0.982 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.055 0.945 49 H 0.048 0.952 50 H 0.083 0.917 51 H 0.082 0.918 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.662 -0.809 -6.114 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.038 4.038 3 N -0.159 5.159 4 C -0.001 4.001 5 C -0.166 4.166 6 C -0.115 4.115 7 C 0.354 3.646 8 O -0.401 6.401 9 N -0.347 5.347 10 C 0.059 3.941 11 H 0.101 0.899 12 C -0.185 4.185 13 C 0.029 3.971 14 N -0.318 5.318 15 C -0.479 4.479 16 H 0.072 0.928 17 C -0.225 4.225 18 N -0.553 5.553 19 Si 0.893 3.107 20 H -0.220 1.220 21 H -0.212 1.212 22 H -0.221 1.221 23 C 0.035 3.965 24 C -0.091 4.091 25 C -0.188 4.188 26 C -0.195 4.195 27 N -0.124 5.124 28 C -0.077 4.077 29 C -0.160 4.160 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.242 0.758 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.037 0.963 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.102 0.898 51 H 0.101 0.899 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.106 0.004 -4.845 23.608 hybrid contribution -1.352 -0.574 -1.427 2.048 sum -24.458 -0.570 -6.272 25.256 Atomic orbital electron populations 1.20838 0.87444 1.04301 1.03781 1.22413 0.98562 0.88952 0.93875 1.68318 1.07911 1.28794 1.10918 1.22383 0.89666 0.96787 0.91244 1.21117 1.00436 0.90472 1.04593 1.22080 0.96036 0.90091 1.03325 1.17586 0.84691 0.84691 0.77626 1.90741 1.68318 1.30772 1.50221 1.46184 1.08205 1.08776 1.71544 1.21072 0.76795 0.97951 0.98285 0.89858 1.22521 0.99853 1.00758 0.95375 1.20891 0.88807 0.88119 0.99264 1.44105 1.48616 1.24535 1.14508 1.19901 1.11832 0.90275 1.25869 0.92765 1.25846 0.94898 0.98583 1.03151 1.70776 1.41923 1.10946 1.31611 0.83561 0.76005 0.74748 0.76434 1.22023 1.21155 1.22091 1.21001 0.88718 0.98624 0.88194 1.21421 0.99272 0.93753 0.94613 1.21777 0.98291 0.97614 1.01135 1.21812 1.00124 1.01334 0.96259 1.68148 1.08567 1.28702 1.06999 1.22099 0.90080 0.96923 0.98605 1.20769 0.99308 0.92223 1.03652 0.89547 0.89586 0.89898 0.89542 0.91052 0.86957 0.75820 0.91767 0.92647 0.90285 0.96282 0.91959 0.96401 0.92162 0.94549 0.93035 0.90636 0.92995 0.92619 0.93263 0.89848 0.89914 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 9.78 36.01 0.35 -0.24 16 2 C 0.10 1.03 6.79 -82.28 -0.56 0.47 16 3 N -0.44 -5.44 10.34 -5.24 -0.05 -5.49 16 4 C 0.14 1.85 6.82 -82.04 -0.56 1.29 16 5 C -0.11 -1.32 8.98 36.00 0.32 -1.00 16 6 C 0.03 0.37 6.75 -82.84 -0.56 -0.19 16 7 C 0.57 8.94 7.71 -12.19 -0.09 8.84 16 8 O -0.52 -9.21 12.95 5.35 0.07 -9.14 16 9 N -0.70 -10.52 4.28 -54.61 -0.23 -10.75 16 10 C 0.16 2.80 1.57 -67.89 -0.11 2.69 16 11 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 12 C -0.14 -2.81 5.31 -26.61 -0.14 -2.96 16 13 C 0.16 3.63 4.73 -3.71 -0.02 3.62 16 14 N -0.59 -14.35 2.25 -172.06 -0.39 -14.74 16 15 C -0.35 -9.47 9.46 -15.06 -0.14 -9.61 16 16 H 0.05 1.48 7.94 -52.49 -0.42 1.06 16 17 C -0.02 -0.62 4.66 -17.43 -0.08 -0.70 16 18 N -0.91 -27.20 12.50 55.49 0.69 -26.51 16 19 Si 1.06 25.04 29.99 -169.99 -5.10 19.95 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.16 3.30 5.24 -3.49 -0.02 3.28 16 24 C -0.09 -1.46 0.56 -154.17 -0.09 -1.55 16 25 C -0.13 -2.10 7.84 37.15 0.29 -1.81 16 26 C -0.14 -1.93 8.31 37.16 0.31 -1.62 16 27 N -0.41 -5.12 9.65 -5.88 -0.06 -5.18 16 28 C 0.07 0.67 6.79 -82.43 -0.56 0.11 16 29 C -0.10 -0.61 9.78 36.00 0.35 -0.26 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.28 5.94 -51.93 -0.31 -0.02 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.11 1.54 5.68 -51.93 -0.29 1.25 16 36 H 0.41 5.63 6.03 -40.82 -0.25 5.38 16 37 H 0.06 1.26 6.34 -51.93 -0.33 0.93 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 2.07 6.47 -51.93 -0.34 1.73 16 40 H 0.02 0.47 7.87 -51.93 -0.41 0.06 16 41 H 0.27 8.12 6.82 -40.82 -0.28 7.85 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 44 H 0.04 0.50 6.58 -51.93 -0.34 0.16 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 1.42 5.97 -51.93 -0.31 1.11 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.05 0.64 7.36 -51.93 -0.38 0.26 16 50 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 52 H 0.08 0.30 5.94 -51.93 -0.31 -0.01 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -31.55 398.37 -8.57 -40.12 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -8.21 Total: 5.38 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.30 Total: 0.37 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.04 Total: -62.68 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.10 Total: 19.95 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.55 -8.57 -40.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940875749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.018 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds