Wall clock time and date at job start Wed Apr 1 2020 04:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32136 * 119.90024 * 2 1 4 4 C 1.32090 * 120.07065 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.06306 * 180.02562 * 4 3 2 6 6 C 1.39443 * 119.86918 * 0.02562 * 4 3 2 7 7 C 1.48153 * 120.09389 * 180.02562 * 6 4 3 8 8 O 1.21517 * 120.00139 * 354.23655 * 7 6 4 9 9 N 1.34770 * 120.00084 * 174.24307 * 7 6 4 10 10 C 1.46500 * 120.00413 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.45449 * 325.02236 * 10 9 7 12 12 C 1.53044 * 109.45986 * 84.99463 * 10 9 7 13 13 C 1.53194 * 109.31159 * 181.37488 * 12 10 9 14 14 N 1.46928 * 108.77326 * 305.36980 * 13 12 10 15 15 C 1.36944 * 120.62538 * 233.58190 * 14 13 12 16 16 H 1.08002 * 119.99599 * 150.08982 * 15 14 13 17 17 C 1.38805 * 120.00119 * 330.09318 * 15 14 13 18 18 N 1.31617 * 120.00360 * 334.97696 * 17 15 14 19 19 Si 1.86803 * 120.00034 * 154.98021 * 17 15 14 20 20 H 1.48500 * 109.47145 * 59.99941 * 19 17 15 21 21 H 1.48502 * 109.47250 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47040 * 299.99596 * 19 17 15 23 23 C 1.46915 * 118.74302 * 53.85814 * 14 13 12 24 24 C 1.53033 * 109.45174 * 205.05877 * 10 9 7 25 25 C 1.52994 * 109.49988 * 298.57127 * 24 10 9 26 26 C 1.53005 * 109.49815 * 58.66619 * 24 10 9 27 27 N 1.33000 * 119.80910 * 0.27089 * 6 4 3 28 28 C 1.31806 * 119.92592 * 359.45203 * 27 6 4 29 29 C 1.50693 * 119.93745 * 180.27146 * 28 27 6 30 30 H 1.08994 * 109.47240 * 89.99404 * 1 2 3 31 31 H 1.08998 * 109.46902 * 209.99853 * 1 2 3 32 32 H 1.08999 * 109.46854 * 329.99678 * 1 2 3 33 33 H 1.08994 * 109.47305 * 265.46831 * 5 4 3 34 34 H 1.09002 * 109.47151 * 25.47272 * 5 4 3 35 35 H 1.09001 * 109.46993 * 145.47260 * 5 4 3 36 36 H 0.97003 * 119.99717 * 359.97438 * 9 7 6 37 37 H 1.09000 * 109.49439 * 61.42936 * 12 10 9 38 38 H 1.08999 * 109.52632 * 301.34448 * 12 10 9 39 39 H 1.08995 * 109.58894 * 185.57593 * 13 12 10 40 40 H 1.09003 * 109.70278 * 65.21854 * 13 12 10 41 41 H 0.97008 * 119.99405 * 354.17851 * 18 17 15 42 42 H 1.09001 * 109.58602 * 65.92858 * 23 14 13 43 43 H 1.08998 * 109.59156 * 186.34861 * 23 14 13 44 44 H 1.09006 * 109.47441 * 59.99962 * 25 24 10 45 45 H 1.09000 * 109.47734 * 179.97438 * 25 24 10 46 46 H 1.08999 * 109.47428 * 300.00115 * 25 24 10 47 47 H 1.09006 * 109.46979 * 60.00091 * 26 24 10 48 48 H 1.09000 * 109.47025 * 179.97438 * 26 24 10 49 49 H 1.08994 * 109.47204 * 300.00306 * 26 24 10 50 50 H 1.08998 * 109.47299 * 270.27869 * 29 28 27 51 51 H 1.08999 * 109.47236 * 30.27933 * 29 28 27 52 52 H 1.09000 * 109.47238 * 150.27983 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4866 1.1494 -0.0005 5 6 4.2376 2.4558 0.0001 6 6 4.1847 -0.0577 -0.0016 7 6 5.6662 -0.0591 -0.0016 8 8 6.2748 0.9874 -0.1063 9 7 6.3390 -1.2211 0.1144 10 6 7.8040 -1.2226 0.1139 11 1 8.1675 -0.4438 -0.5564 12 6 8.3146 -0.9547 1.5315 13 6 9.8462 -0.9229 1.5207 14 7 10.3409 -2.1726 0.9271 15 6 11.2489 -2.9505 1.5948 16 1 11.2567 -4.0201 1.4454 17 6 12.1590 -2.3644 2.4636 18 7 12.5034 -1.1041 2.3041 19 14 12.8952 -3.3643 3.8592 20 1 13.6303 -4.5274 3.3007 21 1 13.8322 -2.5141 4.6367 22 1 11.8088 -3.8463 4.7495 23 6 9.8477 -2.5686 -0.3989 24 6 8.3120 -2.5847 -0.3642 25 6 7.8309 -3.6748 0.5955 26 6 7.7740 -2.8662 -1.7686 27 7 3.5166 -1.2078 -0.0076 28 6 2.1986 -1.2026 -0.0015 29 6 1.4415 -2.5055 -0.0021 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 4.4887 2.7311 -1.0242 34 1 3.6145 3.2329 0.4428 35 1 5.1529 2.3485 0.5821 36 1 5.8531 -2.0565 0.1983 37 1 7.9719 -1.7467 2.1974 38 1 7.9333 0.0048 1.8808 39 1 10.2170 -0.8313 2.5415 40 1 10.1920 -0.0754 0.9289 41 1 12.1877 -0.6091 1.5318 42 1 10.1916 -1.8527 -1.1455 43 1 10.2195 -3.5632 -0.6451 44 1 6.7412 -3.6820 0.6204 45 1 8.1926 -4.6448 0.2544 46 1 8.2157 -3.4743 1.5954 47 1 8.1184 -2.0899 -2.4520 48 1 8.1365 -3.8362 -2.1089 49 1 6.6843 -2.8727 -1.7457 50 1 1.2585 -2.8190 -1.0298 51 1 2.0286 -3.2672 0.5110 52 1 0.4896 -2.3729 0.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940875749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:35 Heat of formation + Delta-G solvation = 2.107475 kcal Electronic energy + Delta-G solvation = -31843.632450 eV Core-core repulsion = 27842.595719 eV Total energy + Delta-G solvation = -4001.036731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.65951 -41.29931 -39.67292 -36.75801 -36.11965 -35.39452 -34.59238 -33.24111 -31.73026 -31.16000 -29.86788 -28.24375 -27.73041 -27.29212 -26.48927 -24.72194 -24.17305 -22.99264 -22.44481 -21.71938 -19.96877 -19.47805 -19.36180 -18.30961 -17.10960 -17.03609 -16.35451 -16.17806 -16.15147 -15.95216 -15.64408 -15.31935 -15.30148 -15.12270 -14.58836 -14.49382 -14.35822 -13.99499 -13.94169 -13.78873 -13.73138 -13.56785 -13.39877 -13.15784 -12.94706 -12.87229 -12.79543 -12.71106 -12.58165 -12.49663 -12.41695 -12.34100 -11.93239 -11.88920 -11.81551 -11.63395 -11.48147 -11.22126 -11.10854 -10.44632 -10.23157 -10.21234 -9.89386 -8.91573 -8.22569 -5.40426 -0.76566 -0.12496 1.53532 1.58638 1.66035 1.84467 1.86906 2.52314 2.66350 2.76894 2.87368 3.20558 3.22535 3.47031 3.55307 3.59283 3.78766 3.83034 3.92899 3.97559 4.13759 4.22959 4.30188 4.46353 4.50799 4.53728 4.61914 4.66761 4.69605 4.72940 4.74107 4.78034 4.80260 4.85121 4.87405 4.92988 4.96840 5.00888 5.07187 5.08405 5.12182 5.16902 5.21285 5.26979 5.32246 5.42926 5.47782 5.58055 5.88306 6.01881 6.33586 6.39783 6.60071 7.01660 7.05691 7.77749 8.24387 9.01623 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.002672 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.797771 B =10476.352209 C =10922.809470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.110 3.890 3 N -0.460 5.460 4 C 0.125 3.875 5 C -0.103 4.103 6 C 0.001 3.999 7 C 0.570 3.430 8 O -0.550 6.550 9 N -0.688 5.688 10 C 0.175 3.825 11 H 0.063 0.937 12 C -0.130 4.130 13 C 0.166 3.834 14 N -0.607 5.607 15 C -0.348 4.348 16 H 0.055 0.945 17 C -0.077 4.077 18 N -0.944 5.944 19 Si 1.113 2.887 20 H -0.274 1.274 21 H -0.296 1.296 22 H -0.279 1.279 23 C 0.158 3.842 24 C -0.077 4.077 25 C -0.124 4.124 26 C -0.130 4.130 27 N -0.419 5.419 28 C 0.067 3.933 29 C -0.100 4.100 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.414 0.586 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.045 0.955 40 H -0.002 1.002 41 H 0.252 0.748 42 H 0.009 0.991 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.047 0.953 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.100 0.900 51 H 0.080 0.920 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.546 -3.248 -6.650 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.034 4.034 3 N -0.176 5.176 4 C -0.014 4.014 5 C -0.160 4.160 6 C -0.138 4.138 7 C 0.355 3.645 8 O -0.429 6.429 9 N -0.338 5.338 10 C 0.071 3.929 11 H 0.081 0.919 12 C -0.170 4.170 13 C 0.040 3.960 14 N -0.331 5.331 15 C -0.477 4.477 16 H 0.072 0.928 17 C -0.273 4.273 18 N -0.585 5.585 19 Si 0.937 3.063 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.206 1.206 23 C 0.032 3.968 24 C -0.079 4.079 25 C -0.181 4.181 26 C -0.187 4.187 27 N -0.136 5.136 28 C -0.078 4.078 29 C -0.158 4.158 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.252 0.748 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.016 0.984 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.119 0.881 51 H 0.099 0.901 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -27.006 -2.448 -5.411 27.652 hybrid contribution -0.323 0.171 -1.319 1.369 sum -27.329 -2.276 -6.730 28.238 Atomic orbital electron populations 1.21051 0.84005 1.05830 1.05333 1.23238 1.00675 0.88234 0.91228 1.68390 1.07230 1.30177 1.11769 1.22422 0.90413 0.96678 0.91852 1.20993 0.99782 0.90939 1.04280 1.21699 0.94784 0.91099 1.06220 1.17905 0.85735 0.84155 0.76708 1.90734 1.69271 1.31661 1.51226 1.45914 1.06877 1.09259 1.71785 1.20704 0.78303 0.97898 0.96024 0.91853 1.22295 0.96756 1.00657 0.97286 1.20635 0.91284 0.87377 0.96752 1.44264 1.48499 1.24294 1.16047 1.20155 1.11491 0.90568 1.25509 0.92756 1.27194 0.95716 0.98844 1.05548 1.70903 1.43940 1.12165 1.31532 0.82889 0.75628 0.73838 0.73903 1.19965 1.22224 1.20564 1.21153 0.91471 0.98125 0.86039 1.21255 0.96234 0.93549 0.96895 1.21696 0.99983 0.97464 0.98980 1.21745 1.01061 1.02061 0.93861 1.68136 1.09966 1.27939 1.07555 1.22876 0.89364 0.98862 0.96735 1.20962 0.99929 0.89756 1.05114 0.87664 0.86580 0.89862 0.89592 0.89760 0.88979 0.74758 0.91512 0.93019 0.93689 0.98407 0.93803 0.97266 0.92056 0.91746 0.92145 0.93638 0.93337 0.91025 0.91552 0.88147 0.90093 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 9.78 71.24 0.70 -0.02 16 2 C 0.11 1.85 6.79 42.63 0.29 2.14 16 3 N -0.46 -10.60 10.34 -170.48 -1.76 -12.36 16 4 C 0.12 3.30 6.82 42.81 0.29 3.59 16 5 C -0.10 -2.58 8.98 71.23 0.64 -1.94 16 6 C 0.00 0.03 6.75 41.89 0.28 0.31 16 7 C 0.57 18.06 7.71 86.88 0.67 18.73 16 8 O -0.55 -20.20 12.95 -3.77 -0.05 -20.25 16 9 N -0.69 -20.41 4.28 -445.00 -1.90 -22.31 16 10 C 0.18 6.11 1.57 45.02 0.07 6.18 16 11 H 0.06 2.50 7.58 -2.39 -0.02 2.48 16 12 C -0.13 -5.24 5.31 30.67 0.16 -5.08 16 13 C 0.17 8.22 4.73 86.36 0.41 8.63 16 14 N -0.61 -30.31 2.25 -698.28 -1.57 -31.88 16 15 C -0.35 -19.20 9.46 84.03 0.80 -18.41 16 16 H 0.05 2.97 7.94 -2.91 -0.02 2.94 16 17 C -0.08 -4.38 4.66 84.86 0.40 -3.99 16 18 N -0.94 -58.68 12.50 21.65 0.27 -58.41 16 19 Si 1.11 51.23 29.99 68.60 2.06 53.29 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 23 C 0.16 6.52 5.24 86.51 0.45 6.97 16 24 C -0.08 -2.50 0.56 -51.96 -0.03 -2.53 16 25 C -0.12 -3.76 7.84 71.98 0.56 -3.20 16 26 C -0.13 -3.35 8.31 71.98 0.60 -2.75 16 27 N -0.42 -9.77 9.65 -172.53 -1.67 -11.43 16 28 C 0.07 1.14 6.79 42.68 0.29 1.43 16 29 C -0.10 -0.76 9.78 71.23 0.70 -0.06 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.12 0.11 5.94 -2.39 -0.01 0.10 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.70 5.68 -2.39 -0.01 2.68 16 36 H 0.41 10.77 6.03 -92.71 -0.56 10.21 16 37 H 0.07 2.66 6.34 -2.39 -0.02 2.65 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 2.51 6.47 -2.39 -0.02 2.49 16 40 H 0.00 -0.11 7.87 -2.39 -0.02 -0.13 16 41 H 0.25 16.12 6.82 -92.70 -0.63 15.49 16 42 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 44 H 0.06 1.58 6.58 -2.38 -0.02 1.57 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.04 1.67 5.97 -2.39 -0.01 1.66 16 47 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 48 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.07 1.52 7.36 -2.39 -0.02 1.50 16 50 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 52 H 0.11 0.17 5.94 -2.39 -0.01 0.15 16 Total: -1.00 -72.77 398.37 3.17 -69.60 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.52 Total: 23.72 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 7.28 Total: 10.03 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -6.63 Total: -136.39 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.06 Total: 53.29 kcal Total: -72.77 3.17 -69.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940875749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.706 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds