Wall clock time and date at job start Wed Apr 1 2020 04:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32139 * 119.90333 * 2 1 4 4 C 1.32074 * 120.07438 * 179.75641 * 3 2 1 5 5 C 1.50700 * 120.06705 * 180.27607 * 4 3 2 6 6 C 1.39450 * 119.86816 * 0.49940 * 4 3 2 7 7 C 1.48155 * 120.09355 * 179.77729 * 6 4 3 8 8 O 1.21512 * 119.99866 * 354.03256 * 7 6 4 9 9 N 1.34773 * 119.99668 * 174.02477 * 7 6 4 10 10 C 1.46500 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46238 * 35.00098 * 10 9 7 12 12 C 1.53048 * 109.45837 * 275.02834 * 10 9 7 13 13 C 1.53194 * 109.30986 * 178.62815 * 12 10 9 14 14 N 1.46930 * 108.77441 * 54.63726 * 13 12 10 15 15 C 1.36941 * 120.62999 * 126.41445 * 14 13 12 16 16 H 1.08002 * 119.99487 * 331.28561 * 15 14 13 17 17 C 1.38807 * 119.99952 * 151.29035 * 15 14 13 18 18 N 1.31621 * 119.99929 * 342.02547 * 17 15 14 19 19 Si 1.86800 * 119.99821 * 162.02897 * 17 15 14 20 20 H 1.48500 * 109.47364 * 60.00031 * 19 17 15 21 21 H 1.48507 * 109.46890 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47231 * 299.99726 * 19 17 15 23 23 C 1.46920 * 118.74025 * 306.38713 * 14 13 12 24 24 C 1.53040 * 109.44734 * 154.96946 * 10 9 7 25 25 C 1.53004 * 109.49687 * 301.32593 * 24 10 9 26 26 C 1.52997 * 109.49843 * 61.42745 * 24 10 9 27 27 N 1.32995 * 119.80930 * 359.50261 * 6 4 3 28 28 C 1.31807 * 119.92609 * 0.25271 * 27 6 4 29 29 C 1.50700 * 119.93809 * 180.02562 * 28 27 6 30 30 H 1.09002 * 109.46850 * 269.98098 * 1 2 3 31 31 H 1.08998 * 109.47161 * 29.97404 * 1 2 3 32 32 H 1.08998 * 109.47203 * 149.97869 * 1 2 3 33 33 H 1.09003 * 109.46836 * 263.41663 * 5 4 3 34 34 H 1.08997 * 109.46798 * 23.41056 * 5 4 3 35 35 H 1.08993 * 109.47003 * 143.41761 * 5 4 3 36 36 H 0.96999 * 119.99983 * 0.02562 * 9 7 6 37 37 H 1.08994 * 109.49727 * 298.57614 * 12 10 9 38 38 H 1.09000 * 109.49531 * 58.65007 * 12 10 9 39 39 H 1.08997 * 109.58365 * 174.42309 * 13 12 10 40 40 H 1.09001 * 109.58905 * 294.70946 * 13 12 10 41 41 H 0.97005 * 119.99610 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.59296 * 173.39680 * 23 14 13 43 43 H 1.08999 * 109.58830 * 293.68594 * 23 14 13 44 44 H 1.08998 * 109.46828 * 60.00658 * 25 24 10 45 45 H 1.09003 * 109.46755 * 180.02562 * 25 24 10 46 46 H 1.08998 * 109.47278 * 300.00128 * 25 24 10 47 47 H 1.09004 * 109.47429 * 59.99888 * 26 24 10 48 48 H 1.09006 * 109.47071 * 180.02562 * 26 24 10 49 49 H 1.08998 * 109.46963 * 299.99711 * 26 24 10 50 50 H 1.09000 * 109.47290 * 89.99850 * 29 28 27 51 51 H 1.08996 * 109.46612 * 210.00294 * 29 28 27 52 52 H 1.08999 * 109.46934 * 329.99922 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1455 0.0000 4 6 3.4865 1.1494 0.0049 5 6 4.2376 2.4559 0.0111 6 6 4.1846 -0.0577 -0.0005 7 6 5.6662 -0.0591 -0.0001 8 8 6.2747 0.9875 -0.1045 9 7 6.3388 -1.2212 0.1162 10 6 7.8038 -1.2225 0.1172 11 1 8.1675 -0.3266 0.6204 12 6 8.3146 -1.2398 -1.3254 13 6 9.8462 -1.2065 -1.3210 14 7 10.3409 -2.3145 -0.4924 15 6 11.2488 -3.2089 -0.9932 16 1 11.2714 -3.4196 -2.0523 17 6 12.1398 -3.8449 -0.1398 18 7 12.3652 -3.3545 1.0607 19 14 13.0191 -5.3966 -0.6951 20 1 13.8292 -5.1009 -1.9040 21 1 13.9099 -5.8767 0.3918 22 1 12.0178 -6.4455 -1.0147 23 6 9.8434 -2.4441 0.8839 24 6 8.3118 -2.4634 0.8548 25 6 7.7737 -2.4620 2.2872 26 6 7.8307 -3.7215 0.1291 27 7 3.5166 -1.2078 -0.0006 28 6 2.1986 -1.2026 -0.0005 29 6 1.4414 -2.5056 0.0001 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 4.5246 2.7149 -1.0080 34 1 3.5996 3.2397 0.4192 35 1 5.1318 2.3579 0.6266 36 1 5.8530 -2.0566 0.1992 37 1 7.9720 -2.1476 -1.8218 38 1 7.9329 -0.3681 -1.8570 39 1 10.2170 -1.3183 -2.3398 40 1 10.1899 -0.2577 -0.9090 41 1 12.9877 -3.7992 1.6572 42 1 10.2122 -3.3724 1.3200 43 1 10.1889 -1.5985 1.4786 44 1 6.6840 -2.4729 2.2659 45 1 8.1361 -3.3458 2.8123 46 1 8.1181 -1.5661 2.8038 47 1 8.2157 -3.7224 -0.8907 48 1 8.1923 -4.6051 0.6552 49 1 6.7410 -3.7334 0.1062 50 1 1.2589 -2.8194 1.0278 51 1 0.4894 -2.3727 -0.5138 52 1 2.0283 -3.2671 -0.5135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940875750.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:40 Heat of formation + Delta-G solvation = 24.400361 kcal Electronic energy + Delta-G solvation = -31835.754251 eV Core-core repulsion = 27835.684212 eV Total energy + Delta-G solvation = -4000.070039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.71651 -39.86056 -38.12319 -35.39637 -34.57582 -34.51058 -32.83260 -31.98278 -30.42126 -29.69778 -28.97649 -26.76690 -26.59429 -25.88867 -24.91971 -23.84103 -22.70620 -21.84679 -20.60678 -20.39713 -18.66890 -18.30690 -17.32390 -16.47980 -16.10543 -15.65162 -15.45636 -14.87758 -14.77247 -14.55412 -14.01073 -13.86881 -13.65526 -13.55822 -13.40146 -13.36141 -13.30323 -13.13388 -12.93164 -12.66889 -12.50069 -12.40860 -12.25863 -12.15694 -11.81477 -11.62106 -11.47995 -11.31955 -11.05002 -11.04545 -10.85572 -10.68800 -10.57338 -10.20847 -10.11821 -10.02293 -9.95885 -9.66908 -9.51481 -9.20170 -9.18134 -8.63127 -8.43729 -6.65753 -5.79243 -3.20955 0.17331 0.76595 2.66251 3.11522 3.38386 3.44390 3.45487 3.51456 3.67482 3.70294 4.07921 4.35362 4.49822 4.62239 4.81962 4.90883 5.01891 5.10318 5.20221 5.21399 5.28465 5.33929 5.41935 5.46581 5.55887 5.57587 5.59660 5.61532 5.72802 5.87112 5.93846 5.97593 6.08689 6.11770 6.19002 6.28003 6.33327 6.41920 6.48249 6.49316 6.66917 6.71646 6.83341 6.89511 6.94984 6.99396 7.05852 7.31556 7.39423 7.60108 7.73087 7.81053 8.28241 8.45368 9.21237 9.84572 10.42230 11.29562 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.002633 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.955964 B =10633.187397 C =11261.059976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.104 3.896 3 N -0.444 5.444 4 C 0.138 3.862 5 C -0.105 4.105 6 C 0.027 3.973 7 C 0.570 3.430 8 O -0.526 6.526 9 N -0.696 5.696 10 C 0.162 3.838 11 H 0.084 0.916 12 C -0.143 4.143 13 C 0.148 3.852 14 N -0.589 5.589 15 C -0.252 4.252 16 H 0.064 0.936 17 C 0.005 3.995 18 N -0.901 5.901 19 Si 0.899 3.101 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.188 3.812 24 C -0.096 4.096 25 C -0.135 4.135 26 C -0.128 4.128 27 N -0.406 5.406 28 C 0.067 3.933 29 C -0.102 4.102 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.405 0.595 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.254 0.746 42 H 0.090 0.910 43 H 0.021 0.979 44 H 0.043 0.957 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.070 0.930 48 H 0.052 0.948 49 H 0.031 0.969 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.087 4.114 -0.029 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.039 4.039 3 N -0.160 5.160 4 C -0.002 4.002 5 C -0.162 4.162 6 C -0.115 4.115 7 C 0.353 3.647 8 O -0.403 6.403 9 N -0.346 5.346 10 C 0.058 3.942 11 H 0.102 0.898 12 C -0.183 4.183 13 C 0.021 3.979 14 N -0.311 5.311 15 C -0.381 4.381 16 H 0.082 0.918 17 C -0.194 4.194 18 N -0.545 5.545 19 Si 0.729 3.271 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.061 3.939 24 C -0.099 4.099 25 C -0.193 4.193 26 C -0.185 4.185 27 N -0.124 5.124 28 C -0.077 4.077 29 C -0.160 4.160 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.242 0.758 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.071 0.929 49 H 0.050 0.950 50 H 0.102 0.898 51 H 0.101 0.899 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.418 4.799 0.015 23.904 hybrid contribution 0.182 -1.258 -0.171 1.283 sum -23.235 3.541 -0.156 23.504 Atomic orbital electron populations 1.20834 0.87476 1.04254 1.03781 1.22402 0.98537 0.88959 0.93992 1.68305 1.07921 1.28804 1.10940 1.22376 0.89673 0.96789 0.91397 1.21054 1.00014 0.90438 1.04722 1.22122 0.96141 0.90047 1.03151 1.17588 0.84634 0.84732 0.77723 1.90743 1.68330 1.30949 1.50291 1.46231 1.08381 1.08711 1.71272 1.21112 0.76544 0.99456 0.97048 0.89826 1.22458 0.99304 1.01057 0.95476 1.20869 0.90113 0.91242 0.95680 1.44028 1.48133 1.28146 1.10743 1.19095 1.09448 1.16350 0.93236 0.91802 1.25027 0.96996 1.00156 0.97215 1.70031 1.36980 1.38820 1.08667 0.86421 0.79227 0.83812 0.77621 1.20914 1.21696 1.21053 1.20790 0.85071 1.01807 0.86226 1.21564 1.00997 0.93546 0.93762 1.21772 0.99389 1.01725 0.96375 1.21750 0.97694 0.96909 1.02134 1.68162 1.08540 1.28712 1.06951 1.22104 0.90098 0.96908 0.98556 1.20774 0.99275 0.92244 1.03687 0.89542 0.89941 0.89614 0.89466 0.91142 0.87302 0.75792 0.91783 0.92723 0.92566 0.96190 0.93587 0.89175 0.96143 0.93830 0.92532 0.93048 0.91079 0.92910 0.95024 0.89806 0.89867 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 9.78 36.01 0.35 -0.24 16 2 C 0.10 1.03 6.79 -82.28 -0.56 0.47 16 3 N -0.44 -5.42 10.34 -5.23 -0.05 -5.47 16 4 C 0.14 1.82 6.82 -82.04 -0.56 1.26 16 5 C -0.11 -1.25 8.87 36.01 0.32 -0.93 16 6 C 0.03 0.38 6.75 -82.84 -0.56 -0.18 16 7 C 0.57 8.91 7.71 -12.19 -0.09 8.81 16 8 O -0.53 -9.13 13.00 5.36 0.07 -9.06 16 9 N -0.70 -10.64 4.28 -54.61 -0.23 -10.87 16 10 C 0.16 2.82 1.57 -67.88 -0.11 2.71 16 11 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 12 C -0.14 -2.60 5.31 -26.61 -0.14 -2.74 16 13 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 14 N -0.59 -14.25 2.42 -172.32 -0.42 -14.67 16 15 C -0.25 -6.71 9.57 -15.06 -0.14 -6.86 16 16 H 0.06 1.69 7.89 -52.49 -0.41 1.27 16 17 C 0.00 0.13 4.88 -17.43 -0.09 0.05 16 18 N -0.90 -25.65 11.31 55.49 0.63 -25.02 16 19 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.19 4.29 3.98 -3.71 -0.01 4.27 16 24 C -0.10 -1.73 0.56 -154.38 -0.09 -1.82 16 25 C -0.13 -2.15 8.31 37.16 0.31 -1.84 16 26 C -0.13 -2.21 7.83 37.16 0.29 -1.91 16 27 N -0.41 -5.19 9.65 -5.88 -0.06 -5.24 16 28 C 0.07 0.68 6.79 -82.42 -0.56 0.12 16 29 C -0.10 -0.64 9.78 36.01 0.35 -0.29 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.29 5.94 -51.93 -0.31 -0.02 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 1.44 5.86 -51.93 -0.30 1.13 16 36 H 0.41 5.79 6.02 -40.82 -0.25 5.55 16 37 H 0.06 1.17 6.33 -51.93 -0.33 0.84 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.09 2.31 6.14 -51.93 -0.32 1.99 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.04 0.62 7.36 -51.93 -0.38 0.24 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.07 1.36 5.97 -51.93 -0.31 1.05 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.03 0.46 6.58 -51.93 -0.34 0.12 16 50 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.08 0.31 5.94 -51.93 -0.31 0.00 16 52 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -30.56 399.31 -8.66 -39.22 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.28 Total: 4.77 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.31 Total: 3.98 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.13 Total: -61.28 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.56 -8.66 -39.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940875750.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.622 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds