Wall clock time and date at job start Wed Apr 1 2020 04:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32139 * 119.90333 * 2 1 4 4 C 1.32074 * 120.07438 * 179.75641 * 3 2 1 5 5 C 1.50700 * 120.06705 * 180.27607 * 4 3 2 6 6 C 1.39450 * 119.86816 * 0.49940 * 4 3 2 7 7 C 1.48155 * 120.09355 * 179.77729 * 6 4 3 8 8 O 1.21512 * 119.99866 * 354.03256 * 7 6 4 9 9 N 1.34773 * 119.99668 * 174.02477 * 7 6 4 10 10 C 1.46500 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46238 * 35.00098 * 10 9 7 12 12 C 1.53048 * 109.45837 * 275.02834 * 10 9 7 13 13 C 1.53194 * 109.30986 * 178.62815 * 12 10 9 14 14 N 1.46930 * 108.77441 * 54.63726 * 13 12 10 15 15 C 1.36941 * 120.62999 * 126.41445 * 14 13 12 16 16 H 1.08002 * 119.99487 * 331.28561 * 15 14 13 17 17 C 1.38807 * 119.99952 * 151.29035 * 15 14 13 18 18 N 1.31621 * 119.99929 * 342.02547 * 17 15 14 19 19 Si 1.86800 * 119.99821 * 162.02897 * 17 15 14 20 20 H 1.48500 * 109.47364 * 60.00031 * 19 17 15 21 21 H 1.48507 * 109.46890 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47231 * 299.99726 * 19 17 15 23 23 C 1.46920 * 118.74025 * 306.38713 * 14 13 12 24 24 C 1.53040 * 109.44734 * 154.96946 * 10 9 7 25 25 C 1.53004 * 109.49687 * 301.32593 * 24 10 9 26 26 C 1.52997 * 109.49843 * 61.42745 * 24 10 9 27 27 N 1.32995 * 119.80930 * 359.50261 * 6 4 3 28 28 C 1.31807 * 119.92609 * 0.25271 * 27 6 4 29 29 C 1.50700 * 119.93809 * 180.02562 * 28 27 6 30 30 H 1.09002 * 109.46850 * 269.98098 * 1 2 3 31 31 H 1.08998 * 109.47161 * 29.97404 * 1 2 3 32 32 H 1.08998 * 109.47203 * 149.97869 * 1 2 3 33 33 H 1.09003 * 109.46836 * 263.41663 * 5 4 3 34 34 H 1.08997 * 109.46798 * 23.41056 * 5 4 3 35 35 H 1.08993 * 109.47003 * 143.41761 * 5 4 3 36 36 H 0.96999 * 119.99983 * 0.02562 * 9 7 6 37 37 H 1.08994 * 109.49727 * 298.57614 * 12 10 9 38 38 H 1.09000 * 109.49531 * 58.65007 * 12 10 9 39 39 H 1.08997 * 109.58365 * 174.42309 * 13 12 10 40 40 H 1.09001 * 109.58905 * 294.70946 * 13 12 10 41 41 H 0.97005 * 119.99610 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.59296 * 173.39680 * 23 14 13 43 43 H 1.08999 * 109.58830 * 293.68594 * 23 14 13 44 44 H 1.08998 * 109.46828 * 60.00658 * 25 24 10 45 45 H 1.09003 * 109.46755 * 180.02562 * 25 24 10 46 46 H 1.08998 * 109.47278 * 300.00128 * 25 24 10 47 47 H 1.09004 * 109.47429 * 59.99888 * 26 24 10 48 48 H 1.09006 * 109.47071 * 180.02562 * 26 24 10 49 49 H 1.08998 * 109.46963 * 299.99711 * 26 24 10 50 50 H 1.09000 * 109.47290 * 89.99850 * 29 28 27 51 51 H 1.08996 * 109.46612 * 210.00294 * 29 28 27 52 52 H 1.08999 * 109.46934 * 329.99922 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1455 0.0000 4 6 3.4865 1.1494 0.0049 5 6 4.2376 2.4559 0.0111 6 6 4.1846 -0.0577 -0.0005 7 6 5.6662 -0.0591 -0.0001 8 8 6.2747 0.9875 -0.1045 9 7 6.3388 -1.2212 0.1162 10 6 7.8038 -1.2225 0.1172 11 1 8.1675 -0.3266 0.6204 12 6 8.3146 -1.2398 -1.3254 13 6 9.8462 -1.2065 -1.3210 14 7 10.3409 -2.3145 -0.4924 15 6 11.2488 -3.2089 -0.9932 16 1 11.2714 -3.4196 -2.0523 17 6 12.1398 -3.8449 -0.1398 18 7 12.3652 -3.3545 1.0607 19 14 13.0191 -5.3966 -0.6951 20 1 13.8292 -5.1009 -1.9040 21 1 13.9099 -5.8767 0.3918 22 1 12.0178 -6.4455 -1.0147 23 6 9.8434 -2.4441 0.8839 24 6 8.3118 -2.4634 0.8548 25 6 7.7737 -2.4620 2.2872 26 6 7.8307 -3.7215 0.1291 27 7 3.5166 -1.2078 -0.0006 28 6 2.1986 -1.2026 -0.0005 29 6 1.4414 -2.5056 0.0001 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 4.5246 2.7149 -1.0080 34 1 3.5996 3.2397 0.4192 35 1 5.1318 2.3579 0.6266 36 1 5.8530 -2.0566 0.1992 37 1 7.9720 -2.1476 -1.8218 38 1 7.9329 -0.3681 -1.8570 39 1 10.2170 -1.3183 -2.3398 40 1 10.1899 -0.2577 -0.9090 41 1 12.9877 -3.7992 1.6572 42 1 10.2122 -3.3724 1.3200 43 1 10.1889 -1.5985 1.4786 44 1 6.6840 -2.4729 2.2659 45 1 8.1361 -3.3458 2.8123 46 1 8.1181 -1.5661 2.8038 47 1 8.2157 -3.7224 -0.8907 48 1 8.1923 -4.6051 0.6552 49 1 6.7410 -3.7334 0.1062 50 1 1.2589 -2.8194 1.0278 51 1 0.4894 -2.3727 -0.5138 52 1 2.0283 -3.2671 -0.5135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940875750.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:39 Heat of formation + Delta-G solvation = 5.731596 kcal Electronic energy + Delta-G solvation = -31836.563790 eV Core-core repulsion = 27835.684212 eV Total energy + Delta-G solvation = -4000.879577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.61921 -41.20294 -39.55558 -36.50937 -35.97481 -35.36207 -34.27073 -33.81333 -31.39714 -31.08991 -29.81163 -28.17544 -27.65142 -27.58815 -26.46859 -24.68872 -24.12591 -22.93469 -22.29985 -21.64478 -19.92057 -19.42271 -18.94479 -18.02386 -17.13507 -16.93734 -16.69044 -16.24135 -15.96092 -15.81506 -15.59877 -15.25502 -14.99114 -14.93389 -14.59141 -14.39152 -14.26199 -13.96222 -13.85942 -13.83855 -13.65674 -13.40954 -13.25226 -13.12061 -13.07563 -12.89671 -12.82103 -12.72449 -12.60060 -12.46678 -12.44995 -12.33945 -11.94633 -11.87069 -11.83435 -11.64382 -11.36016 -11.21198 -11.07405 -10.51799 -10.19760 -10.15146 -9.82909 -8.66366 -7.85959 -5.30747 -0.72925 -0.09285 1.48513 1.50028 1.56926 1.58925 1.93866 2.52668 2.56011 2.81343 2.90477 3.24024 3.29195 3.55174 3.65406 3.70895 3.82460 3.94924 4.01061 4.08540 4.16878 4.32931 4.43108 4.55007 4.56383 4.63529 4.67569 4.68315 4.76382 4.77783 4.80342 4.84033 4.88890 4.93232 4.95464 4.99396 5.02166 5.07615 5.09254 5.20141 5.25513 5.30618 5.33009 5.41013 5.48361 5.52424 5.60228 5.69294 5.72983 6.05705 6.38811 6.41561 6.64146 7.07253 7.16421 7.85882 8.39819 9.20815 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020690 B = 0.002633 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.955964 B =10633.187397 C =11261.059976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.109 3.891 3 N -0.460 5.460 4 C 0.125 3.875 5 C -0.099 4.099 6 C 0.002 3.998 7 C 0.570 3.430 8 O -0.550 6.550 9 N -0.688 5.688 10 C 0.174 3.826 11 H 0.062 0.938 12 C -0.128 4.128 13 C 0.146 3.854 14 N -0.602 5.602 15 C -0.259 4.259 16 H 0.065 0.935 17 C -0.045 4.045 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.278 1.278 21 H -0.296 1.296 22 H -0.276 1.276 23 C 0.198 3.802 24 C -0.086 4.086 25 C -0.128 4.128 26 C -0.119 4.119 27 N -0.420 5.420 28 C 0.066 3.934 29 C -0.101 4.101 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.413 0.587 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.008 0.992 41 H 0.250 0.750 42 H 0.061 0.939 43 H -0.010 1.010 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.044 0.956 47 H 0.052 0.948 48 H 0.046 0.954 49 H 0.063 0.937 50 H 0.099 0.901 51 H 0.114 0.886 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.867 2.795 -0.583 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.034 4.034 3 N -0.175 5.175 4 C -0.014 4.014 5 C -0.156 4.156 6 C -0.137 4.137 7 C 0.355 3.645 8 O -0.428 6.428 9 N -0.339 5.339 10 C 0.070 3.930 11 H 0.080 0.920 12 C -0.168 4.168 13 C 0.020 3.980 14 N -0.324 5.324 15 C -0.389 4.389 16 H 0.083 0.917 17 C -0.241 4.241 18 N -0.579 5.579 19 Si 0.791 3.209 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.202 1.202 23 C 0.071 3.929 24 C -0.089 4.089 25 C -0.186 4.186 26 C -0.177 4.177 27 N -0.137 5.137 28 C -0.079 4.079 29 C -0.158 4.158 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.251 0.749 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.026 0.974 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.008 0.992 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.118 0.882 51 H 0.132 0.868 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -27.205 3.499 -0.555 27.434 hybrid contribution 1.211 -0.800 -0.013 1.451 sum -25.994 2.698 -0.569 26.140 Atomic orbital electron populations 1.21044 0.84073 1.05787 1.05300 1.23211 1.00628 0.88234 0.91354 1.68383 1.07288 1.30102 1.11767 1.22444 0.90382 0.96720 0.91846 1.20946 0.99561 0.90811 1.04291 1.21755 0.94930 0.91033 1.06032 1.17867 0.85623 0.84154 0.76816 1.90733 1.69217 1.31705 1.51170 1.45964 1.07046 1.09215 1.71670 1.20734 0.78073 0.98113 0.96095 0.91952 1.22260 0.96808 1.01538 0.96203 1.20942 0.92193 0.89775 0.95135 1.44240 1.48161 1.28746 1.11303 1.19395 1.09540 1.16528 0.93429 0.91698 1.25740 0.98093 1.02845 0.97408 1.70187 1.37899 1.40031 1.09759 0.85420 0.78102 0.80433 0.76963 1.20393 1.22205 1.20218 1.20563 0.88317 0.98897 0.85112 1.21339 0.97412 0.94500 0.95602 1.21713 1.00713 1.01566 0.94637 1.21654 0.99624 0.95828 1.00557 1.68143 1.09960 1.28096 1.07534 1.22853 0.89391 0.98822 0.96841 1.20958 0.99924 0.89848 1.05067 0.87718 0.89829 0.86676 0.89702 0.89738 0.88988 0.74904 0.91176 0.92132 0.92357 0.97403 0.94114 0.92041 0.99202 0.91463 0.92320 0.93684 0.92910 0.93510 0.91776 0.88220 0.86807 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.78 71.24 0.70 -0.03 16 2 C 0.11 1.84 6.79 42.63 0.29 2.13 16 3 N -0.46 -10.44 10.34 -170.47 -1.76 -12.20 16 4 C 0.12 3.23 6.82 42.81 0.29 3.52 16 5 C -0.10 -2.38 8.87 71.24 0.63 -1.75 16 6 C 0.00 0.05 6.75 41.90 0.28 0.33 16 7 C 0.57 17.80 7.71 86.88 0.67 18.47 16 8 O -0.55 -19.54 13.00 -3.75 -0.05 -19.59 16 9 N -0.69 -20.56 4.28 -444.98 -1.90 -22.46 16 10 C 0.17 6.12 1.57 45.02 0.07 6.19 16 11 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 12 C -0.13 -4.68 5.31 30.68 0.16 -4.52 16 13 C 0.15 6.33 6.52 86.36 0.56 6.90 16 14 N -0.60 -30.04 2.42 -699.09 -1.70 -31.73 16 15 C -0.26 -14.07 9.57 84.03 0.80 -13.26 16 16 H 0.07 3.45 7.89 -2.91 -0.02 3.43 16 17 C -0.05 -2.50 4.88 84.86 0.41 -2.08 16 18 N -0.93 -54.90 11.31 21.65 0.24 -54.66 16 19 Si 0.96 44.53 29.59 68.60 2.03 46.56 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 C 0.20 9.40 3.98 86.37 0.34 9.74 16 24 C -0.09 -3.13 0.56 -52.10 -0.03 -3.16 16 25 C -0.13 -4.04 8.31 71.98 0.60 -3.44 16 26 C -0.12 -4.00 7.83 71.98 0.56 -3.44 16 27 N -0.42 -9.92 9.65 -172.52 -1.66 -11.59 16 28 C 0.07 1.15 6.79 42.68 0.29 1.44 16 29 C -0.10 -0.82 9.78 71.24 0.70 -0.12 16 30 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 0.13 5.94 -2.39 -0.01 0.12 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 2.53 5.86 -2.39 -0.01 2.51 16 36 H 0.41 11.06 6.02 -92.71 -0.56 10.50 16 37 H 0.07 2.50 6.33 -2.39 -0.02 2.48 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 41 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 42 H 0.06 3.28 6.14 -2.39 -0.01 3.26 16 43 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 44 H 0.07 1.80 7.36 -2.39 -0.02 1.78 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.05 1.97 5.97 -2.38 -0.01 1.96 16 48 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 49 H 0.06 1.72 6.58 -2.39 -0.02 1.70 16 50 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.11 0.22 5.94 -2.39 -0.01 0.21 16 52 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -69.04 399.31 2.92 -66.12 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.38 Total: 22.64 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 7.34 Total: 16.91 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -6.78 Total: -132.64 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.05 Total: -19.59 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -69.04 2.92 -66.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940875750.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.849 kcal (2) G-P(sol) polarization free energy of solvation -69.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds