Wall clock time and date at job start Wed Apr 1 2020 04:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.52143 * 2 1 4 4 C 1.53193 * 109.49993 * 239.91722 * 2 1 3 5 5 N 1.46917 * 108.77707 * 185.41395 * 4 2 1 6 6 C 1.36934 * 120.63197 * 233.58855 * 5 4 2 7 7 H 1.08003 * 120.00004 * 151.83874 * 6 5 4 8 8 C 1.38809 * 120.00014 * 331.84329 * 6 5 4 9 9 N 1.31617 * 119.99701 * 343.07445 * 8 6 5 10 10 Si 1.86803 * 119.99989 * 163.07548 * 8 6 5 11 11 H 1.48501 * 109.47186 * 60.00306 * 10 8 6 12 12 H 1.48502 * 109.46757 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47057 * 299.99919 * 10 8 6 14 14 C 1.46931 * 118.73799 * 53.60818 * 5 4 2 15 15 C 1.53194 * 108.77830 * 306.39261 * 14 5 4 16 16 C 1.53038 * 109.49362 * 120.08166 * 2 1 3 17 17 H 1.08996 * 109.45748 * 61.30429 * 16 2 1 18 18 N 1.46508 * 109.46030 * 301.33656 * 16 2 1 19 19 C 1.34776 * 119.99774 * 154.93503 * 18 16 2 20 20 O 1.21281 * 120.00243 * 0.02562 * 19 18 16 21 21 C 1.50698 * 119.99603 * 180.27609 * 19 18 16 22 22 H 1.08999 * 109.68470 * 60.24353 * 21 19 18 23 23 C 1.53403 * 109.68207 * 180.79985 * 21 19 18 24 24 C 1.53124 * 109.44890 * 169.37229 * 23 21 19 25 25 C 1.53352 * 109.52976 * 289.99008 * 24 23 21 26 26 C 1.50870 * 108.41254 * 49.99055 * 25 24 23 27 27 N 1.33567 * 128.03671 * 163.24930 * 26 25 24 28 28 C 1.30747 * 109.15119 * 180.09248 * 27 26 25 29 29 N 1.35310 * 108.76559 * 359.97438 * 28 27 26 30 30 H 0.97003 * 126.49715 * 180.02562 * 29 28 27 31 31 C 1.35035 * 123.98346 * 343.29447 * 26 25 24 32 32 H 1.08997 * 109.47206 * 299.92031 * 1 2 3 33 33 H 1.08994 * 109.46927 * 59.92348 * 1 2 3 34 34 H 1.09003 * 109.46722 * 179.91702 * 1 2 3 35 35 H 1.09006 * 109.46715 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.47292 * 300.07950 * 3 2 1 37 37 H 1.09000 * 109.47250 * 60.07821 * 3 2 1 38 38 H 1.08998 * 109.58124 * 65.62177 * 4 2 1 39 39 H 1.09006 * 109.58572 * 305.20149 * 4 2 1 40 40 H 0.97003 * 119.99606 * 180.02562 * 9 8 6 41 41 H 1.09005 * 109.58540 * 186.60477 * 14 5 4 42 42 H 1.09000 * 109.70280 * 66.24691 * 14 5 4 43 43 H 1.09002 * 109.49785 * 294.68627 * 15 14 5 44 44 H 1.08993 * 109.49701 * 174.58489 * 15 14 5 45 45 H 0.96999 * 119.99948 * 334.93533 * 18 16 2 46 46 H 1.09001 * 109.46876 * 289.36273 * 23 21 19 47 47 H 1.08999 * 109.47689 * 49.36697 * 23 21 19 48 48 H 1.08998 * 109.46230 * 169.97354 * 24 23 21 49 49 H 1.08997 * 109.45574 * 50.00067 * 24 23 21 50 50 H 1.09002 * 109.67728 * 290.26396 * 25 24 23 51 51 H 1.08996 * 109.71286 * 169.74366 * 25 24 23 52 52 H 1.08005 * 125.61691 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3793 -2.1943 7 1 5.2962 -0.0325 -1.9918 8 6 3.8048 -0.3690 -3.4935 9 7 2.7415 -1.0806 -3.8022 10 14 4.6561 0.6549 -4.8036 11 1 6.0614 0.1988 -4.9527 12 1 3.9443 0.4947 -6.0970 13 1 4.6396 2.0846 -4.4027 14 6 4.1053 -1.4267 0.0309 15 6 3.5708 -0.6950 1.2662 16 6 2.0407 -0.7231 1.2483 17 1 1.6967 -1.7573 1.2351 18 7 1.5264 -0.0529 2.4453 19 6 1.3970 -0.7386 3.5984 20 8 1.7068 -1.9102 3.6453 21 6 0.8621 -0.0509 4.8280 22 1 -0.1448 0.3183 4.6334 23 6 0.8334 -1.0387 6.0012 24 6 0.5457 -0.2799 7.2997 25 6 1.7589 0.5822 7.6693 26 6 2.1620 1.3828 6.4558 27 7 2.9470 2.4623 6.4056 28 6 3.0486 2.8614 5.1647 29 7 2.3205 2.0336 4.3801 30 1 2.2170 2.0938 3.4175 31 6 1.7616 1.0997 5.1976 32 1 -0.3633 0.5126 0.8907 33 1 -0.3633 0.5150 -0.8893 34 1 -0.3633 -1.0277 -0.0015 35 1 3.1314 1.4410 -0.0005 36 1 1.6773 1.9566 -0.8892 37 1 1.6796 1.9558 0.8907 38 1 1.7638 -0.1580 -2.1388 39 1 1.6053 -1.7217 -1.2980 40 1 2.4002 -1.0737 -4.7101 41 1 5.1896 -1.3246 -0.0136 42 1 3.8397 -2.4823 0.0881 43 1 3.9159 0.3389 1.2542 44 1 3.9334 -1.1897 2.1672 45 1 1.2790 0.8842 2.4079 46 1 0.0523 -1.7801 5.8329 47 1 1.7986 -1.5391 6.0788 48 1 0.3489 -0.9924 8.1008 49 1 -0.3257 0.3601 7.1608 50 1 2.5849 -0.0592 7.9768 51 1 1.4959 1.2573 8.4836 52 1 3.6197 3.7117 4.8222 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941022897.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:39 Heat of formation + Delta-G solvation = 27.882628 kcal Electronic energy + Delta-G solvation = -32600.881877 eV Core-core repulsion = 28600.962841 eV Total energy + Delta-G solvation = -3999.919036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.60360 -40.16758 -38.43389 -36.48651 -34.74034 -33.59633 -32.79132 -32.04855 -30.47675 -29.37314 -29.08296 -26.93577 -26.06734 -25.48403 -24.15158 -22.54333 -22.38989 -21.60882 -20.72054 -20.56091 -19.12796 -18.48670 -17.97153 -17.21768 -16.59654 -15.87721 -15.66032 -15.01926 -14.94227 -14.84814 -14.50372 -14.18280 -13.93271 -13.86215 -13.68882 -13.53079 -13.39921 -13.23714 -12.76754 -12.70000 -12.39601 -12.21527 -11.78792 -11.62290 -11.47847 -11.41843 -11.16127 -11.14068 -11.10432 -10.96653 -10.78134 -10.67401 -10.37327 -10.29879 -10.20691 -10.07537 -10.05703 -9.85462 -9.74339 -9.48940 -8.83413 -8.52743 -8.35895 -6.74761 -5.86523 -3.28927 1.74919 2.55645 2.86521 2.91466 3.20182 3.32713 3.39019 3.39425 4.22200 4.35380 4.42684 4.54259 4.59047 4.78790 4.96535 5.04410 5.08973 5.15713 5.17809 5.24646 5.30346 5.39750 5.45250 5.46169 5.66286 5.72631 5.75090 5.77243 5.81646 5.89241 5.93168 5.97400 6.01891 6.08348 6.14589 6.17892 6.28345 6.32795 6.37645 6.48210 6.52763 6.59089 6.72784 6.79949 6.86911 6.91680 7.11324 7.21576 7.45283 7.56382 7.72739 7.86494 8.19963 8.37258 9.13543 9.76390 10.33447 11.22178 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002952 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.490693 B = 9483.463771 C =10007.810922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.098 4.098 3 C -0.126 4.126 4 C 0.187 3.813 5 N -0.588 5.588 6 C -0.253 4.253 7 H 0.065 0.935 8 C 0.005 3.995 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.284 1.284 14 C 0.147 3.853 15 C -0.141 4.141 16 C 0.162 3.838 17 H 0.084 0.916 18 N -0.724 5.724 19 C 0.514 3.486 20 O -0.527 6.527 21 C -0.029 4.029 22 H 0.107 0.893 23 C -0.095 4.095 24 C -0.118 4.118 25 C -0.036 4.036 26 C 0.018 3.982 27 N -0.486 5.486 28 C 0.186 3.814 29 N -0.558 5.558 30 H 0.417 0.583 31 C -0.024 4.024 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.022 0.978 38 H 0.093 0.907 39 H 0.020 0.980 40 H 0.255 0.745 41 H 0.056 0.944 42 H 0.020 0.980 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.385 0.615 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.078 0.922 52 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 6.286 18.174 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.184 4.184 4 C 0.061 3.939 5 N -0.310 5.310 6 C -0.383 4.383 7 H 0.083 0.917 8 C -0.194 4.194 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.020 3.980 15 C -0.181 4.181 16 C 0.059 3.941 17 H 0.102 0.898 18 N -0.376 5.376 19 C 0.299 3.701 20 O -0.402 6.402 21 C -0.052 4.052 22 H 0.124 0.876 23 C -0.133 4.133 24 C -0.155 4.155 25 C -0.074 4.074 26 C -0.113 4.113 27 N -0.205 5.205 28 C -0.097 4.097 29 N -0.162 5.162 30 H 0.256 0.744 31 C -0.141 4.141 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.111 0.889 39 H 0.038 0.962 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.220 0.780 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.096 0.904 52 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.272 5.771 18.716 20.565 hybrid contribution -0.075 0.853 -2.152 2.316 sum -6.347 6.624 16.564 18.935 Atomic orbital electron populations 1.21766 0.95321 1.01488 1.00627 1.21590 0.94515 0.96660 0.97284 1.21753 1.02684 0.94792 0.99124 1.20812 0.83159 0.96783 0.93178 1.44031 1.01592 1.69188 1.16222 1.19106 0.97976 1.35490 0.85697 0.91748 1.25032 0.98476 0.98901 0.96976 1.70008 1.25616 1.40040 1.18917 0.86397 0.79053 0.80434 0.81056 1.20875 1.21634 1.21055 1.20869 0.96691 0.94312 0.86117 1.22433 0.94696 1.01393 0.99606 1.21066 0.93845 0.96967 0.82214 0.89836 1.46492 1.66343 1.13760 1.10989 1.20447 0.78194 0.87320 0.84160 1.90717 1.49089 1.15969 1.84460 1.19965 0.97884 0.92406 0.94950 0.87551 1.21418 1.04225 0.96222 0.91482 1.21635 0.97817 0.98725 0.97371 1.19979 0.97721 0.96363 0.93321 1.20500 1.00465 0.96582 0.93738 1.70007 1.18709 1.12554 1.19239 1.25086 0.99852 0.98727 0.85987 1.43107 1.38690 1.23586 1.10785 0.74369 1.20476 1.05748 0.96164 0.91680 0.94044 0.92464 0.92891 0.90932 0.92606 0.95948 0.88867 0.96191 0.93514 0.92559 0.96193 0.92135 0.92834 0.78019 0.90261 0.90154 0.90527 0.91529 0.90473 0.90377 0.77353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.31 37.16 0.31 -1.63 16 2 C -0.10 -1.62 0.56 -154.39 -0.09 -1.71 16 3 C -0.13 -1.93 7.83 37.16 0.29 -1.64 16 4 C 0.19 4.11 3.98 -3.72 -0.01 4.09 16 5 N -0.59 -13.78 2.43 -172.32 -0.42 -14.20 16 6 C -0.25 -6.58 9.58 -15.06 -0.14 -6.72 16 7 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 8 C 0.00 0.13 4.92 -17.43 -0.09 0.05 16 9 N -0.90 -25.11 11.20 55.49 0.62 -24.49 16 10 Si 0.90 20.92 29.59 -169.99 -5.03 15.89 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.15 3.03 6.52 -3.71 -0.02 3.01 16 15 C -0.14 -2.43 5.31 -26.61 -0.14 -2.58 16 16 C 0.16 2.61 1.57 -67.88 -0.11 2.50 16 17 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 18 N -0.72 -9.22 3.84 -53.76 -0.21 -9.43 16 19 C 0.51 6.98 7.10 -10.99 -0.08 6.90 16 20 O -0.53 -9.18 15.50 5.56 0.09 -9.09 16 21 C -0.03 -0.31 2.90 -92.74 -0.27 -0.58 16 22 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 23 C -0.10 -0.92 4.67 -26.46 -0.12 -1.05 16 24 C -0.12 -0.90 5.90 -26.48 -0.16 -1.05 16 25 C -0.04 -0.33 6.30 -27.62 -0.17 -0.51 16 26 C 0.02 0.21 6.98 -82.89 -0.58 -0.37 16 27 N -0.49 -6.16 11.25 -10.74 -0.12 -6.28 16 28 C 0.19 1.88 13.05 -89.92 -1.17 0.70 16 29 N -0.56 -5.44 5.89 -10.28 -0.06 -5.50 16 30 H 0.42 3.45 6.79 -40.82 -0.28 3.18 16 31 C -0.02 -0.27 6.32 -81.85 -0.52 -0.78 16 32 H 0.04 0.50 7.36 -51.93 -0.38 0.12 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.25 5.97 -51.93 -0.31 0.94 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.02 0.25 6.58 -51.93 -0.34 -0.09 16 38 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.01 6.33 -51.93 -0.33 0.68 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.39 4.03 4.66 -40.82 -0.19 3.84 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 52 H 0.21 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -31.48 391.76 -10.70 -42.18 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.40 Total: 6.37 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.07 Total: -1.35 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: -0.19 Total: -59.90 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.48 -10.70 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941022897.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.060 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds