Wall clock time and date at job start Wed Apr 1 2020 04:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.52143 * 2 1 4 4 C 1.53193 * 109.49993 * 239.91722 * 2 1 3 5 5 N 1.46917 * 108.77707 * 185.41395 * 4 2 1 6 6 C 1.36934 * 120.63197 * 233.58855 * 5 4 2 7 7 H 1.08003 * 120.00004 * 151.83874 * 6 5 4 8 8 C 1.38809 * 120.00014 * 331.84329 * 6 5 4 9 9 N 1.31617 * 119.99701 * 343.07445 * 8 6 5 10 10 Si 1.86803 * 119.99989 * 163.07548 * 8 6 5 11 11 H 1.48501 * 109.47186 * 60.00306 * 10 8 6 12 12 H 1.48502 * 109.46757 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47057 * 299.99919 * 10 8 6 14 14 C 1.46931 * 118.73799 * 53.60818 * 5 4 2 15 15 C 1.53194 * 108.77830 * 306.39261 * 14 5 4 16 16 C 1.53038 * 109.49362 * 120.08166 * 2 1 3 17 17 H 1.08996 * 109.45748 * 61.30429 * 16 2 1 18 18 N 1.46508 * 109.46030 * 301.33656 * 16 2 1 19 19 C 1.34776 * 119.99774 * 154.93503 * 18 16 2 20 20 O 1.21281 * 120.00243 * 0.02562 * 19 18 16 21 21 C 1.50698 * 119.99603 * 180.27609 * 19 18 16 22 22 H 1.08999 * 109.68470 * 60.24353 * 21 19 18 23 23 C 1.53403 * 109.68207 * 180.79985 * 21 19 18 24 24 C 1.53124 * 109.44890 * 169.37229 * 23 21 19 25 25 C 1.53352 * 109.52976 * 289.99008 * 24 23 21 26 26 C 1.50870 * 108.41254 * 49.99055 * 25 24 23 27 27 N 1.33567 * 128.03671 * 163.24930 * 26 25 24 28 28 C 1.30747 * 109.15119 * 180.09248 * 27 26 25 29 29 N 1.35310 * 108.76559 * 359.97438 * 28 27 26 30 30 H 0.97003 * 126.49715 * 180.02562 * 29 28 27 31 31 C 1.35035 * 123.98346 * 343.29447 * 26 25 24 32 32 H 1.08997 * 109.47206 * 299.92031 * 1 2 3 33 33 H 1.08994 * 109.46927 * 59.92348 * 1 2 3 34 34 H 1.09003 * 109.46722 * 179.91702 * 1 2 3 35 35 H 1.09006 * 109.46715 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.47292 * 300.07950 * 3 2 1 37 37 H 1.09000 * 109.47250 * 60.07821 * 3 2 1 38 38 H 1.08998 * 109.58124 * 65.62177 * 4 2 1 39 39 H 1.09006 * 109.58572 * 305.20149 * 4 2 1 40 40 H 0.97003 * 119.99606 * 180.02562 * 9 8 6 41 41 H 1.09005 * 109.58540 * 186.60477 * 14 5 4 42 42 H 1.09000 * 109.70280 * 66.24691 * 14 5 4 43 43 H 1.09002 * 109.49785 * 294.68627 * 15 14 5 44 44 H 1.08993 * 109.49701 * 174.58489 * 15 14 5 45 45 H 0.96999 * 119.99948 * 334.93533 * 18 16 2 46 46 H 1.09001 * 109.46876 * 289.36273 * 23 21 19 47 47 H 1.08999 * 109.47689 * 49.36697 * 23 21 19 48 48 H 1.08998 * 109.46230 * 169.97354 * 24 23 21 49 49 H 1.08997 * 109.45574 * 50.00067 * 24 23 21 50 50 H 1.09002 * 109.67728 * 290.26396 * 25 24 23 51 51 H 1.08996 * 109.71286 * 169.74366 * 25 24 23 52 52 H 1.08005 * 125.61691 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3793 -2.1943 7 1 5.2962 -0.0325 -1.9918 8 6 3.8048 -0.3690 -3.4935 9 7 2.7415 -1.0806 -3.8022 10 14 4.6561 0.6549 -4.8036 11 1 6.0614 0.1988 -4.9527 12 1 3.9443 0.4947 -6.0970 13 1 4.6396 2.0846 -4.4027 14 6 4.1053 -1.4267 0.0309 15 6 3.5708 -0.6950 1.2662 16 6 2.0407 -0.7231 1.2483 17 1 1.6967 -1.7573 1.2351 18 7 1.5264 -0.0529 2.4453 19 6 1.3970 -0.7386 3.5984 20 8 1.7068 -1.9102 3.6453 21 6 0.8621 -0.0509 4.8280 22 1 -0.1448 0.3183 4.6334 23 6 0.8334 -1.0387 6.0012 24 6 0.5457 -0.2799 7.2997 25 6 1.7589 0.5822 7.6693 26 6 2.1620 1.3828 6.4558 27 7 2.9470 2.4623 6.4056 28 6 3.0486 2.8614 5.1647 29 7 2.3205 2.0336 4.3801 30 1 2.2170 2.0938 3.4175 31 6 1.7616 1.0997 5.1976 32 1 -0.3633 0.5126 0.8907 33 1 -0.3633 0.5150 -0.8893 34 1 -0.3633 -1.0277 -0.0015 35 1 3.1314 1.4410 -0.0005 36 1 1.6773 1.9566 -0.8892 37 1 1.6796 1.9558 0.8907 38 1 1.7638 -0.1580 -2.1388 39 1 1.6053 -1.7217 -1.2980 40 1 2.4002 -1.0737 -4.7101 41 1 5.1896 -1.3246 -0.0136 42 1 3.8397 -2.4823 0.0881 43 1 3.9159 0.3389 1.2542 44 1 3.9334 -1.1897 2.1672 45 1 1.2790 0.8842 2.4079 46 1 0.0523 -1.7801 5.8329 47 1 1.7986 -1.5391 6.0788 48 1 0.3489 -0.9924 8.1008 49 1 -0.3257 0.3601 7.1608 50 1 2.5849 -0.0592 7.9768 51 1 1.4959 1.2573 8.4836 52 1 3.6197 3.7117 4.8222 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941022897.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:38 Heat of formation + Delta-G solvation = 10.260918 kcal Electronic energy + Delta-G solvation = -32601.646012 eV Core-core repulsion = 28600.962841 eV Total energy + Delta-G solvation = -4000.683171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.39318 -41.40687 -39.76963 -37.31977 -36.31100 -34.70378 -34.02505 -33.70508 -31.55870 -30.76080 -29.86125 -28.20321 -27.64095 -27.03672 -25.28202 -23.88576 -23.18219 -22.49642 -22.33951 -21.71971 -19.88618 -19.76507 -19.09126 -18.69631 -17.87857 -17.13609 -16.77724 -16.61941 -15.92025 -15.77468 -15.63810 -15.42432 -15.28104 -15.16398 -14.99105 -14.71313 -14.60843 -14.41584 -14.04322 -13.88068 -13.48639 -13.30030 -13.08882 -12.97887 -12.90585 -12.78493 -12.62822 -12.48384 -12.36550 -12.16742 -11.98228 -11.87221 -11.82894 -11.80721 -11.69584 -11.39788 -11.30316 -11.13772 -10.85372 -10.68758 -10.54610 -10.08836 -9.15574 -8.69702 -7.88273 -5.33617 0.95350 1.47622 1.48240 1.52309 1.55415 1.99430 2.11269 2.21348 2.50354 3.27058 3.47982 3.51933 3.60863 3.66759 3.77265 3.84126 3.93521 4.04588 4.11252 4.28028 4.30294 4.35869 4.38895 4.44145 4.53448 4.55168 4.59486 4.71782 4.75412 4.81889 4.90371 4.92354 4.99316 5.01457 5.02359 5.06164 5.15372 5.18385 5.20471 5.25350 5.28982 5.29606 5.39990 5.44452 5.49183 5.58916 5.67606 5.72231 5.76753 6.37126 6.39777 6.44268 7.09252 7.12951 7.14053 7.83090 8.36322 9.18187 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002952 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.490693 B = 9483.463771 C =10007.810922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.121 4.121 4 C 0.196 3.804 5 N -0.601 5.601 6 C -0.259 4.259 7 H 0.066 0.934 8 C -0.045 4.045 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.280 1.280 12 H -0.296 1.296 13 H -0.274 1.274 14 C 0.144 3.856 15 C -0.125 4.125 16 C 0.176 3.824 17 H 0.055 0.945 18 N -0.709 5.709 19 C 0.514 3.486 20 O -0.568 6.568 21 C -0.019 4.019 22 H 0.136 0.864 23 C -0.095 4.095 24 C -0.107 4.107 25 C -0.038 4.038 26 C -0.001 4.001 27 N -0.524 5.524 28 C 0.191 3.809 29 N -0.554 5.554 30 H 0.424 0.576 31 C -0.034 4.034 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.064 0.936 39 H -0.016 1.016 40 H 0.250 0.750 41 H 0.055 0.945 42 H 0.002 0.998 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.401 0.599 46 H 0.085 0.915 47 H 0.055 0.945 48 H 0.095 0.905 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.084 0.916 52 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 8.739 19.831 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.179 4.179 4 C 0.070 3.930 5 N -0.323 5.323 6 C -0.389 4.389 7 H 0.083 0.917 8 C -0.240 4.240 9 N -0.580 5.580 10 Si 0.792 3.208 11 H -0.206 1.206 12 H -0.223 1.223 13 H -0.200 1.200 14 C 0.018 3.982 15 C -0.165 4.165 16 C 0.071 3.929 17 H 0.073 0.927 18 N -0.362 5.362 19 C 0.301 3.699 20 O -0.446 6.446 21 C -0.041 4.041 22 H 0.154 0.846 23 C -0.133 4.133 24 C -0.144 4.144 25 C -0.077 4.077 26 C -0.130 4.130 27 N -0.243 5.243 28 C -0.092 4.092 29 N -0.158 5.158 30 H 0.265 0.735 31 C -0.151 4.151 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.002 0.998 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.239 0.761 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.089 0.911 51 H 0.103 0.897 52 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -7.083 8.255 20.401 23.119 hybrid contribution 0.246 0.024 -2.642 2.654 sum -6.837 8.279 17.759 20.752 Atomic orbital electron populations 1.21733 0.93280 1.01420 1.02326 1.21347 0.96059 0.97000 0.94550 1.21685 1.01457 0.93640 1.01068 1.20599 0.82459 0.95069 0.94905 1.44238 1.02115 1.69507 1.16479 1.19407 0.98289 1.34751 0.86482 0.91657 1.25733 0.99360 1.00102 0.98849 1.70173 1.27203 1.41682 1.18896 0.85409 0.77859 0.79321 0.78251 1.20605 1.22272 1.19978 1.20937 0.96785 0.93738 0.86782 1.22213 0.95466 1.01443 0.97375 1.20619 0.92981 0.95820 0.83459 0.92712 1.46184 1.65920 1.14317 1.09739 1.21057 0.77156 0.86831 0.84859 1.90713 1.50752 1.18032 1.85105 1.19977 0.98927 0.92049 0.93162 0.84639 1.21426 1.03135 0.96380 0.92405 1.21589 0.97395 0.98755 0.96686 1.20071 0.98243 0.96409 0.92930 1.20929 1.00486 0.96773 0.94859 1.70014 1.19915 1.13562 1.20815 1.25779 0.99005 0.98950 0.85436 1.43088 1.38427 1.23218 1.11070 0.73501 1.20519 1.06246 0.96517 0.91778 0.90564 0.92467 0.93956 0.92790 0.93437 0.91250 0.91772 0.99771 0.94102 0.92599 0.98006 0.90744 0.92985 0.76130 0.89660 0.92622 0.88698 0.90216 0.91076 0.89726 0.74154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 8.31 71.98 0.60 -2.93 16 2 C -0.09 -2.82 0.56 -52.10 -0.03 -2.85 16 3 C -0.12 -3.41 7.83 71.98 0.56 -2.84 16 4 C 0.20 8.89 3.98 86.36 0.34 9.24 16 5 N -0.60 -28.89 2.43 -699.09 -1.70 -30.59 16 6 C -0.26 -13.69 9.58 84.03 0.81 -12.88 16 7 H 0.07 3.38 7.89 -2.91 -0.02 3.35 16 8 C -0.04 -2.42 4.92 84.86 0.42 -2.00 16 9 N -0.93 -53.73 11.20 21.65 0.24 -53.49 16 10 Si 0.96 43.43 29.59 68.60 2.03 45.45 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 14 C 0.14 6.08 6.52 86.36 0.56 6.64 16 15 C -0.12 -4.24 5.31 30.67 0.16 -4.08 16 16 C 0.18 5.53 1.57 45.02 0.07 5.60 16 17 H 0.05 2.09 7.58 -2.39 -0.02 2.07 16 18 N -0.71 -16.28 3.84 -442.39 -1.70 -17.99 16 19 C 0.51 13.00 7.10 87.66 0.62 13.62 16 20 O -0.57 -19.53 15.50 -3.03 -0.05 -19.58 16 21 C -0.02 -0.34 2.90 -12.17 -0.04 -0.38 16 22 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 23 C -0.10 -1.67 4.67 30.77 0.14 -1.52 16 24 C -0.11 -1.35 5.90 30.75 0.18 -1.17 16 25 C -0.04 -0.65 6.30 30.02 0.19 -0.46 16 26 C 0.00 -0.01 6.98 41.61 0.29 0.28 16 27 N -0.52 -12.23 11.25 -187.89 -2.11 -14.34 16 28 C 0.19 3.29 13.05 180.11 2.35 5.64 16 29 N -0.55 -8.98 5.89 -186.45 -1.10 -10.08 16 30 H 0.42 5.28 6.79 -92.71 -0.63 4.65 16 31 C -0.03 -0.66 6.32 41.14 0.26 -0.40 16 32 H 0.08 1.55 7.36 -2.39 -0.02 1.53 16 33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.74 5.97 -2.38 -0.01 1.73 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.28 6.58 -2.39 -0.02 1.26 16 38 H 0.06 3.29 6.06 -2.39 -0.01 3.28 16 39 H -0.02 -0.81 8.14 -2.38 -0.02 -0.83 16 40 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.06 2.32 7.93 -2.38 -0.02 2.30 16 42 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.07 2.35 6.33 -2.39 -0.02 2.33 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.40 6.74 4.66 -92.71 -0.43 6.31 16 46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 48 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.08 0.84 8.11 -2.39 -0.02 0.82 16 50 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.24 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -71.85 391.76 2.99 -68.86 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.12 Total: 22.24 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 7.50 Total: 9.51 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -6.37 Total: -126.48 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.05 Total: -19.58 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -71.85 2.99 -68.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941022897.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.120 kcal (2) G-P(sol) polarization free energy of solvation -71.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds